RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 ZNF137PP52743 207 aa9.41□□□□□ -0.9
UPF3B-204ENST00000619445 HNF4GQ14541 408 aa9.41□□□□□ -0.9
UPF3B-204ENST00000619445 SLC22A6Q4U2R8 563 aa9.41□□□□□ -0.9
UPF3B-204ENST00000619445 DEFB121Q5J5C9 76 aa9.41□□□□□ -0.9
UPF3B-204ENST00000619445 C10orf99Q6UWK7 81 aa9.41□□□□□ -0.9
UPF3B-204ENST00000619445 KLHL30-AS1Q8NEE0 82 aa9.41□□□□□ -0.9
UPF3B-204ENST00000619445 OR8U1Q8NH10 309 aa9.41□□□□□ -0.9
UPF3B-204ENST00000619445 RTN4IP1Q8WWV3 396 aaPredicted RBP9.41□□□□□ -0.9
UPF3B-204ENST00000619445 GHSRQ92847 366 aa9.41□□□□□ -0.9
UPF3B-204ENST00000619445 TMEM80Q96HE8 168 aa9.41□□□□□ -0.9
UPF3B-204ENST00000619445 NOL4LQ96MY1 436 aaPredicted RBP9.41□□□□□ -0.9
UPF3B-204ENST00000619445 RASL11BQ9BPW5 248 aa9.41□□□□□ -0.9
UPF3B-204ENST00000619445 GNG12Q9UBI6 72 aa9.41□□□□□ -0.9
UPF3B-204ENST00000619445 ZNF580Q9UK33 172 aa9.41□□□□□ -0.9
UPF3B-204ENST00000619445 MAPK3P27361 379 aaPredicted RBP9.4□□□□□ -0.9
UPF3B-204ENST00000619445 GPR12P47775 334 aa9.4□□□□□ -0.9
UPF3B-204ENST00000619445 FOXE3Q13461 319 aa9.4□□□□□ -0.9
UPF3B-204ENST00000619445 UTF1Q5T230 341 aa9.4□□□□□ -0.9
UPF3B-204ENST00000619445 DMKNQ6E0U4 476 aaPredicted RBP9.4□□□□□ -0.9
UPF3B-204ENST00000619445 ETV3LQ6ZN32 361 aa9.4□□□□□ -0.9
UPF3B-204ENST00000619445 SLC25A48Q6ZT89 311 aaKnown RBP9.4□□□□□ -0.9
UPF3B-204ENST00000619445 Q8N6K4 173 aa9.4□□□□□ -0.9
UPF3B-204ENST00000619445 PACRGLQ8N7B6 248 aa9.4□□□□□ -0.9
UPF3B-204ENST00000619445 NKAIN3Q8N8D7 197 aa9.4□□□□□ -0.9
UPF3B-204ENST00000619445 ST6GALNAC6Q969X2 333 aa9.4□□□□□ -0.9
UPF3B-204ENST00000619445 P2RX4Q99571 388 aa9.4□□□□□ -0.9
UPF3B-204ENST00000619445 ETAA1Q9NY74 926 aa9.4□□□□□ -0.9
UPF3B-204ENST00000619445 RCC2Q9P258 522 aaKnown RBP9.4□□□□□ -0.9
UPF3B-204ENST00000619445 GHRLQ9UBU3 117 aa9.4□□□□□ -0.9
UPF3B-204ENST00000619445 TRAPPC2LQ9UL33 140 aa9.4□□□□□ -0.9
UPF3B-204ENST00000619445 LRRC42Q9Y546 428 aa9.4□□□□□ -0.9
UPF3B-204ENST00000619445 COL7A1Q02388 2944 aa9.4□□□□□ -0.9
UPF3B-204ENST00000619445 EFCAB10A6NFE3 127 aa9.39□□□□□ -0.91
UPF3B-204ENST00000619445 H0YHG0 523 aa9.39□□□□□ -0.91
UPF3B-204ENST00000619445 EBAG9O00559 213 aa9.39□□□□□ -0.91
UPF3B-204ENST00000619445 BAG2O95816 211 aa9.39□□□□□ -0.91
UPF3B-204ENST00000619445 CD1AP06126 327 aa9.39□□□□□ -0.91
UPF3B-204ENST00000619445 CDX1P47902 265 aaPredicted RBP9.39□□□□□ -0.91
UPF3B-204ENST00000619445 DGCR2P98153 550 aa9.39□□□□□ -0.91
UPF3B-204ENST00000619445 CD69Q07108 199 aa9.39□□□□□ -0.91
UPF3B-204ENST00000619445 GPR50Q13585 617 aa9.39□□□□□ -0.91
UPF3B-204ENST00000619445 DIAPH2-AS1Q14236 149 aa9.39□□□□□ -0.91
UPF3B-204ENST00000619445 SMN1Q16637 294 aaKnown RBP9.39□□□□□ -0.91
UPF3B-204ENST00000619445 OR2G6Q5TZ20 316 aa9.39□□□□□ -0.91
UPF3B-204ENST00000619445 XAF1Q6GPH4 301 aa9.39□□□□□ -0.91
UPF3B-204ENST00000619445 C8orf86Q6ZUL3 223 aa9.39□□□□□ -0.91
UPF3B-204ENST00000619445 GAPTQ8N292 157 aa9.39□□□□□ -0.91
UPF3B-204ENST00000619445 JAGN1Q8N5M9 183 aa9.39□□□□□ -0.91
UPF3B-204ENST00000619445 RNF152Q8N8N0 203 aa9.39□□□□□ -0.91
UPF3B-204ENST00000619445 TMEM104Q8NE00 496 aa9.39□□□□□ -0.91
UPF3B-204ENST00000619445 B9D2Q9BPU9 175 aa9.39□□□□□ -0.91
UPF3B-204ENST00000619445 UQCC2Q9BRT2 126 aa9.39□□□□□ -0.91
UPF3B-204ENST00000619445 KCNIP1Q9NZI2 227 aa9.39□□□□□ -0.91
UPF3B-204ENST00000619445 MRPS28Q9Y2Q9 187 aaKnown RBP9.39□□□□□ -0.91
UPF3B-204ENST00000619445 A0A1W2PPE3 182 aa9.38□□□□□ -0.91
UPF3B-204ENST00000619445 WI2-2373I1.2A0A1W2PRP0 233 aa9.38□□□□□ -0.91
UPF3B-204ENST00000619445 CCL24O00175 119 aa9.38□□□□□ -0.91
UPF3B-204ENST00000619445 LANCL1O43813 399 aa9.38□□□□□ -0.91
UPF3B-204ENST00000619445 RGS11O94810 467 aa9.38□□□□□ -0.91
UPF3B-204ENST00000619445 FUT3P21217 361 aa9.38□□□□□ -0.91
UPF3B-204ENST00000619445 VDAC1P21796 283 aa9.38□□□□□ -0.91
UPF3B-204ENST00000619445 SOX6P35712 828 aa9.38□□□□□ -0.91
UPF3B-204ENST00000619445 REG1BP48304 166 aa9.38□□□□□ -0.91
UPF3B-204ENST00000619445 KRTAP10-11P60412 298 aa9.38□□□□□ -0.91
UPF3B-204ENST00000619445 DOC2BQ14184 412 aa9.38□□□□□ -0.91
UPF3B-204ENST00000619445 KIR2DS1Q14954 304 aa9.38□□□□□ -0.91
UPF3B-204ENST00000619445 SYT6Q5T7P8 510 aaPredicted RBP9.38□□□□□ -0.91
UPF3B-204ENST00000619445 AWAT2Q6E213 333 aa9.38□□□□□ -0.91
UPF3B-204ENST00000619445 RAB12Q6IQ22 244 aa9.38□□□□□ -0.91
UPF3B-204ENST00000619445 GLIPR1L1Q6UWM5 242 aa9.38□□□□□ -0.91
UPF3B-204ENST00000619445 Q8N9W7 124 aa9.38□□□□□ -0.91
UPF3B-204ENST00000619445 OR5M8Q8NGP6 311 aa9.38□□□□□ -0.91
UPF3B-204ENST00000619445 CCDC107Q8WV48 283 aa9.38□□□□□ -0.91
UPF3B-204ENST00000619445 S1PR3Q99500 378 aa9.38□□□□□ -0.91
UPF3B-204ENST00000619445 CNOT2Q9NZN8 540 aaKnown RBP9.38□□□□□ -0.91
UPF3B-204ENST00000619445 PEX16Q9Y5Y5 336 aa9.38□□□□□ -0.91
UPF3B-204ENST00000619445 TRBV5-7A0A0A0MS05 114 aa9.37□□□□□ -0.91
UPF3B-204ENST00000619445 TRAV39A0A0B4J263 110 aa9.37□□□□□ -0.91
UPF3B-204ENST00000619445 C12orf77C9JDV5 145 aa9.37□□□□□ -0.91
UPF3B-204ENST00000619445 SC5DO75845 299 aa9.37□□□□□ -0.91
UPF3B-204ENST00000619445 IGHG4P01861 327 aa9.37□□□□□ -0.91
UPF3B-204ENST00000619445 IGF1P05019 195 aa9.37□□□□□ -0.91
UPF3B-204ENST00000619445 NHLRC4P0CG21 123 aaPredicted RBP9.37□□□□□ -0.91
UPF3B-204ENST00000619445 UBBP0CG47 229 aa9.37□□□□□ -0.91
UPF3B-204ENST00000619445 HOXD3P31249 432 aaPredicted RBP9.37□□□□□ -0.91
UPF3B-204ENST00000619445 CAPGP40121 348 aa9.37□□□□□ -0.91
UPF3B-204ENST00000619445 LY6G6FQ5SQ64 297 aa9.37□□□□□ -0.91
UPF3B-204ENST00000619445 C9orf66Q5T8R8 295 aa9.37□□□□□ -0.91
UPF3B-204ENST00000619445 DHRSXQ8N5I4 330 aa9.37□□□□□ -0.91
UPF3B-204ENST00000619445 FAM71E2Q8N5Q1 922 aa9.37□□□□□ -0.91
UPF3B-204ENST00000619445 CYGBQ8WWM9 190 aa9.37□□□□□ -0.91
UPF3B-204ENST00000619445 MUL1Q969V5 352 aa9.37□□□□□ -0.91
UPF3B-204ENST00000619445 PGLYRP3Q96LB9 341 aa9.37□□□□□ -0.91
UPF3B-204ENST00000619445 CST11Q9H112 138 aa9.37□□□□□ -0.91
UPF3B-204ENST00000619445 DCLRE1BQ9H816 532 aa9.37□□□□□ -0.91
UPF3B-204ENST00000619445 NBEAL2Q6ZNJ1 2754 aa9.37□□□□□ -0.91
UPF3B-204ENST00000619445 IGHV3-72A0A0B4J1Y9 119 aa9.37□□□□□ -0.91
UPF3B-204ENST00000619445 MYL12BO14950 172 aa9.37□□□□□ -0.91
UPF3B-204ENST00000619445 HBZP02008 142 aa9.37□□□□□ -0.91
UPF3B-204ENST00000619445 MGMTP16455 207 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms