RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 LDLRAD2Q5SZI1 272 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 OLFML2AQ68BL7 652 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 TRAT1Q6PIZ9 186 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 Q6ZPA2 131 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 LHFPL4Q7Z7J7 247 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 OR5H6Q8NGV6 325 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 UBALD1Q8TB05 177 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 NDNFQ8TB73 568 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 TBL2Q9Y4P3 447 aaKnown RBP13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 ETV7Q9Y603 341 aa13.44□□□□□ -0.26
CCDC28A-202ENST00000611852 HOXA3O43365 443 aaPredicted RBP13.43□□□□□ -0.26
CCDC28A-202ENST00000611852 MELTFP08582 738 aa13.43□□□□□ -0.26
CCDC28A-202ENST00000611852 ZNF182P17025 639 aaPredicted RBP13.43□□□□□ -0.26
CCDC28A-202ENST00000611852 ZNF554Q86TJ5 538 aa13.43□□□□□ -0.26
CCDC28A-202ENST00000611852 LDLRAD3Q86YD5 345 aa13.43□□□□□ -0.26
CCDC28A-202ENST00000611852 SLC25A38Q96DW6 304 aa13.43□□□□□ -0.26
CCDC28A-202ENST00000611852 DUX5Q96PT3 197 aa13.43□□□□□ -0.26
CCDC28A-202ENST00000611852 HDHD3Q9BSH5 251 aaPredicted RBP13.43□□□□□ -0.26
CCDC28A-202ENST00000611852 RIMS4Q9H426 269 aaPredicted RBP13.43□□□□□ -0.26
CCDC28A-202ENST00000611852 TAF9BQ9HBM6 251 aa13.43□□□□□ -0.26
CCDC28A-202ENST00000611852 RHBDL2Q9NX52 303 aa13.43□□□□□ -0.26
CCDC28A-202ENST00000611852 ABRACLQ9P1F3 81 aa13.43□□□□□ -0.26
CCDC28A-202ENST00000611852 ZNRD1Q9P1U0 126 aa13.43□□□□□ -0.26
CCDC28A-202ENST00000611852 TRBV6-6A0A0A6YYG2 114 aa13.42□□□□□ -0.26
CCDC28A-202ENST00000611852 F2RL2O00254 374 aa13.42□□□□□ -0.26
CCDC28A-202ENST00000611852 MFNGO00587 321 aa13.42□□□□□ -0.26
CCDC28A-202ENST00000611852 SPINT2O43291 252 aa13.42□□□□□ -0.26
CCDC28A-202ENST00000611852 IGLV1-47P01700 117 aa13.42□□□□□ -0.26
CCDC28A-202ENST00000611852 HIST1H1DP16402 221 aaKnown RBP13.42□□□□□ -0.26
CCDC28A-202ENST00000611852 LOXL3P58215 753 aa13.42□□□□□ -0.26
CCDC28A-202ENST00000611852 SLC9A3R2Q15599 337 aa13.42□□□□□ -0.26
CCDC28A-202ENST00000611852 ZNF880Q6PDB4 577 aa13.42□□□□□ -0.26
CCDC28A-202ENST00000611852 BEND2Q8NDZ0 799 aa13.42□□□□□ -0.26
CCDC28A-202ENST00000611852 OR52M1Q8NGK5 317 aa13.42□□□□□ -0.26
CCDC28A-202ENST00000611852 OR4P4Q8NGL7 312 aa13.42□□□□□ -0.26
CCDC28A-202ENST00000611852 LEAP2Q969E1 77 aa13.42□□□□□ -0.26
CCDC28A-202ENST00000611852 DCSTAMPQ9H295 470 aa13.42□□□□□ -0.26
CCDC28A-202ENST00000611852 CHMP1AQ9HD42 196 aaPredicted RBP13.42□□□□□ -0.26
CCDC28A-202ENST00000611852 C12orf4Q9NQ89 552 aa13.42□□□□□ -0.26
CCDC28A-202ENST00000611852 KCNIP1Q9NZI2 227 aa13.42□□□□□ -0.26
CCDC28A-202ENST00000611852 SPATA2Q9UM82 520 aa13.42□□□□□ -0.26
CCDC28A-202ENST00000611852 FBN1P35555 2871 aaKnown RBP13.41□□□□□ -0.26
CCDC28A-202ENST00000611852 CLDN34H7C241 214 aa13.41□□□□□ -0.26
CCDC28A-202ENST00000611852 IGHV3-7P01780 117 aa13.41□□□□□ -0.26
CCDC28A-202ENST00000611852 HBZP02008 142 aa13.41□□□□□ -0.26
CCDC28A-202ENST00000611852 GNB3P16520 340 aa13.41□□□□□ -0.26
CCDC28A-202ENST00000611852 PAX6P26367 422 aa13.41□□□□□ -0.26
CCDC28A-202ENST00000611852 IER3P46695 156 aa13.41□□□□□ -0.26
CCDC28A-202ENST00000611852 UBA52P62987 128 aaKnown RBP13.41□□□□□ -0.26
CCDC28A-202ENST00000611852 LSAMPQ13449 338 aa13.41□□□□□ -0.26
CCDC28A-202ENST00000611852 PRR18Q8N4B5 295 aa13.41□□□□□ -0.26
CCDC28A-202ENST00000611852 OR9G1Q8NH87 305 aa13.41□□□□□ -0.26
CCDC28A-202ENST00000611852 OR1L1Q8NH94 360 aa13.41□□□□□ -0.26
CCDC28A-202ENST00000611852 ZNF596Q8TC21 504 aa13.41□□□□□ -0.26
CCDC28A-202ENST00000611852 SSMEM1Q8WWF3 244 aa13.41□□□□□ -0.26
CCDC28A-202ENST00000611852 CMSS1Q9BQ75 279 aaKnown RBP13.41□□□□□ -0.26
CCDC28A-202ENST00000611852 MEGF9Q9H1U4 602 aa13.41□□□□□ -0.26
CCDC28A-202ENST00000611852 ZMAT3Q9HA38 289 aaKnown RBP13.41□□□□□ -0.26
CCDC28A-202ENST00000611852 RAB9BQ9NP90 201 aa13.41□□□□□ -0.26
CCDC28A-202ENST00000611852 PSG11Q9UQ72 335 aa13.41□□□□□ -0.26
CCDC28A-202ENST00000611852 A0A075B6Q4 140 aa13.4□□□□□ -0.26
CCDC28A-202ENST00000611852 TRIM77I1YAP6 450 aa13.4□□□□□ -0.26
CCDC28A-202ENST00000611852 SDCBPO00560 298 aaPredicted RBP13.4□□□□□ -0.26
CCDC28A-202ENST00000611852 SCGNO76038 276 aa13.4□□□□□ -0.26
CCDC28A-202ENST00000611852 IGHV4-59P01825 116 aa13.4□□□□□ -0.26
CCDC28A-202ENST00000611852 HTR1DP28221 377 aa13.4□□□□□ -0.26
CCDC28A-202ENST00000611852 PRRX1P54821 245 aa13.4□□□□□ -0.26
CCDC28A-202ENST00000611852 HLA-DRB5Q30154 266 aa13.4□□□□□ -0.26
CCDC28A-202ENST00000611852 KRTAP24-1Q3LI83 254 aa13.4□□□□□ -0.26
CCDC28A-202ENST00000611852 MINOS1Q5TGZ0 78 aa13.4□□□□□ -0.26
CCDC28A-202ENST00000611852 MOB1BQ7L9L4 216 aa13.4□□□□□ -0.26
CCDC28A-202ENST00000611852 C5orf24Q7Z6I8 188 aa13.4□□□□□ -0.26
CCDC28A-202ENST00000611852 DYNAPQ8N1N2 210 aa13.4□□□□□ -0.26
CCDC28A-202ENST00000611852 ZFAND2BQ8WV99 257 aa13.4□□□□□ -0.26
CCDC28A-202ENST00000611852 MALSU1Q96EH3 234 aa13.4□□□□□ -0.26
CCDC28A-202ENST00000611852 GFOD1Q9NXC2 390 aa13.4□□□□□ -0.26
CCDC28A-202ENST00000611852 POMT1Q9Y6A1 747 aa13.4□□□□□ -0.26
CCDC28A-202ENST00000611852 MINOS1-NBL1R4GNA1 71 aa13.4□□□□□ -0.26
CCDC28A-202ENST00000611852 IGHV3-43A0A0B4J1X8 118 aa13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 POM121CA8CG34 1229 aa13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 SERPINE3A8MV23 424 aa13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 J3QR06 171 aa13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 TOR1AO14656 332 aa13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 IGHV3-43DP0DP04 118 aa13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 HMGN3Q15651 99 aa13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 SSX2Q16385 188 aa13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 TMEM30BQ3MIR4 351 aa13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 FAM53AQ6NSI3 398 aaPredicted RBP13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 TMEM86BQ8N661 226 aa13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 SETD6Q8TBK2 473 aa13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 DYNC2LI1Q8TCX1 351 aa13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 KCTD12Q96CX2 325 aaKnown RBP13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 BUB1B-PAK6H3BSN5 160 aa13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 RNASE1P07998 156 aaKnown RBP13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 CD3GP09693 182 aa13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 GNG10P50151 68 aa13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 RORCP51449 518 aa13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 ARL6IP1Q15041 203 aa13.39□□□□□ -0.27
CCDC28A-202ENST00000611852 CDNFQ49AH0 187 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 133 ms