RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 TSGA10Q9BZW7 698 aa3.25□□□□□ -1.89
LINC00540-201ENST00000611481 NAT10Q9H0A0 1025 aaKnown RBP3.25□□□□□ -1.89
LINC00540-201ENST00000611481 PIGUQ9H490 435 aa3.25□□□□□ -1.89
LINC00540-201ENST00000611481 REEP4Q9H6H4 257 aa3.25□□□□□ -1.89
LINC00540-201ENST00000611481 CD274Q9NZQ7 290 aa3.25□□□□□ -1.89
LINC00540-201ENST00000611481 CTSZQ9UBR2 303 aa3.25□□□□□ -1.89
LINC00540-201ENST00000611481 FBXL3Q9UKT7 428 aa3.25□□□□□ -1.89
LINC00540-201ENST00000611481 PUS1Q9Y606 427 aaKnown RBP eCLIP3.25□□□□□ -1.89
LINC00540-201ENST00000611481 PRSS37A4D1T9 235 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 MSGN1A6NI15 193 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 TRDCB7Z8K6 153 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 E7ESA3 106 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 HSD17B6O14756 317 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 EIF4E2O60573 245 aaKnown RBP3.24□□□□□ -1.89
LINC00540-201ENST00000611481 ENTPD5O75356 428 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 TSHBP01222 138 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 PRSS1P07477 247 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 IL3P08700 152 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 ZSCAN5DPP0CG00 497 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 BGNP21810 368 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 FGF9P31371 208 aaPredicted RBP3.24□□□□□ -1.89
LINC00540-201ENST00000611481 FCGR2CP31995 323 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 PMELP40967 661 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 YAP1P46937 504 aaKnown RBP3.24□□□□□ -1.89
LINC00540-201ENST00000611481 POU3F4P49335 361 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 DAP3P51398 398 aaKnown RBP3.24□□□□□ -1.89
LINC00540-201ENST00000611481 UBE2E1P51965 193 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 HNRNPA3P51991 378 aaKnown RBP3.24□□□□□ -1.89
LINC00540-201ENST00000611481 RPL8P62917 257 aaKnown RBP3.24□□□□□ -1.89
LINC00540-201ENST00000611481 RPS27AP62979 156 aaKnown RBP3.24□□□□□ -1.89
LINC00540-201ENST00000611481 ADARB1P78563 741 aaKnown RBP3.24□□□□□ -1.89
LINC00540-201ENST00000611481 GNA13Q14344 377 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 OR7A5Q15622 319 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 TBC1D28Q2M2D7 210 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 DEFB136Q30KP8 78 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 ZNF497Q6ZNH5 498 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 PRSS48Q7RTY5 328 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 SPAG16Q8N0X2 631 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 SYS1Q8N2H4 156 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 METTL4Q8N3J2 472 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 MS4A15Q8N5U1 240 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 COX18Q8N8Q8 333 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 SLC26A10Q8NG04 563 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 LYPD6BQ8NI32 183 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 ZNF563Q8TA94 476 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 SLC25A40Q8TBP6 338 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 KLF14Q8TD94 323 aaPredicted RBP3.24□□□□□ -1.89
LINC00540-201ENST00000611481 TMEM239Q8WW34 195 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 TCTEX1D2Q8WW35 142 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 UFD1Q92890 307 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 ISOC2Q96AB3 205 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 ST6GAL2Q96JF0 529 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 OR2V2Q96R30 315 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 ECSITQ9BQ95 431 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 MAP1LC3CQ9BXW4 147 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 OR2J1Q9GZK6 312 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 PPDPFQ9H3Y8 114 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 ELL3Q9HB65 397 aaPredicted RBP3.24□□□□□ -1.89
LINC00540-201ENST00000611481 VCX3AQ9NNX9 186 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 ACER3Q9NUN7 267 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 OPTCQ9UBM4 332 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 CDH10Q9Y6N8 788 aa3.24□□□□□ -1.89
LINC00540-201ENST00000611481 A0A1B0GW15 77 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 A6NDX4 124 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 OR5B21A6NL26 309 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 FCN1O00602 326 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 DYNC1I1O14576 645 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 HDAC3O15379 428 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 LYPD3O95274 346 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 SNAP29O95721 258 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 OCMP0CE72 109 aaPredicted RBP3.23□□□□□ -1.89
LINC00540-201ENST00000611481 SERPINA2P20848 420 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 IL12AP29459 219 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 SLC6A1P30531 599 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 INSL3P51460 131 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 PKNOX1P55347 436 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 RND3P61587 244 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 OXA1LQ15070 435 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 SOHLH1Q5JUK2 328 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 SAMD4BQ5PRF9 694 aaKnown RBP3.23□□□□□ -1.89
LINC00540-201ENST00000611481 PVRIGQ6DKI7 326 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 ZNF836Q6ZNA1 936 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 Q6ZR03 302 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 PLEKHG7Q6ZR37 379 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 ZNF621Q6ZSS3 439 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 GRINAQ7Z429 371 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 ZNF695Q8IW36 515 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 Q8N7P7 452 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 ZNF781Q8N8C0 355 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 CYB561A3Q8NBI2 242 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 DDIT4LQ96D03 193 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 CHMP6Q96FZ7 201 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 RNF170Q96K19 258 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 FAM218AQ96MZ4 157 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 LITAFQ99732 161 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 ACTR3CQ9C0K3 210 aaPredicted RBP3.23□□□□□ -1.89
LINC00540-201ENST00000611481 HOXD1Q9GZZ0 328 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 FGF20Q9NP95 211 aaPredicted RBP3.23□□□□□ -1.89
LINC00540-201ENST00000611481 ISYNA1Q9NPH2 558 aa3.23□□□□□ -1.89
LINC00540-201ENST00000611481 OR2S2Q9NQN1 319 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms