RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 A0A1W2PRD5 423 aa14.79□□□□□ -0.04
LIG1-216ENST00000598938 A0A1W2PRF3 423 aa14.79□□□□□ -0.04
LIG1-216ENST00000598938 A0A1W2PRM7 423 aa14.79□□□□□ -0.04
LIG1-216ENST00000598938 POM121CA8CG34 1229 aa14.79□□□□□ -0.04
LIG1-216ENST00000598938 SERPINE3A8MV23 424 aa14.79□□□□□ -0.04
LIG1-216ENST00000598938 ODF3BA8MYP8 253 aa14.79□□□□□ -0.04
LIG1-216ENST00000598938 CD34P28906 385 aa14.79□□□□□ -0.04
LIG1-216ENST00000598938 CDNFQ49AH0 187 aa14.79□□□□□ -0.04
LIG1-216ENST00000598938 MIDNQ504T8 468 aa14.79□□□□□ -0.04
LIG1-216ENST00000598938 MOB1BQ7L9L4 216 aa14.79□□□□□ -0.04
LIG1-216ENST00000598938 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.79□□□□□ -0.04
LIG1-216ENST00000598938 SAMD12Q8N8I0 201 aa14.79□□□□□ -0.04
LIG1-216ENST00000598938 SGMS2Q8NHU3 365 aa14.79□□□□□ -0.04
LIG1-216ENST00000598938 AP3S1Q92572 193 aa14.79□□□□□ -0.04
LIG1-216ENST00000598938 CMTM3Q96MX0 182 aa14.79□□□□□ -0.04
LIG1-216ENST00000598938 ZMAT3Q9HA38 289 aaKnown RBP14.79□□□□□ -0.04
LIG1-216ENST00000598938 COMMD3Q9UBI1 195 aa14.79□□□□□ -0.04
LIG1-216ENST00000598938 A0A075B6Q4 140 aa14.78□□□□□ -0.04
LIG1-216ENST00000598938 ZNF701M0R085 212 aaPredicted RBP14.78□□□□□ -0.04
LIG1-216ENST00000598938 F2RL2O00254 374 aa14.78□□□□□ -0.04
LIG1-216ENST00000598938 SPINT2O43291 252 aa14.78□□□□□ -0.04
LIG1-216ENST00000598938 HBZP02008 142 aa14.78□□□□□ -0.04
LIG1-216ENST00000598938 GSTP1P09211 210 aaKnown RBP14.78□□□□□ -0.04
LIG1-216ENST00000598938 CD3GP09693 182 aa14.78□□□□□ -0.04
LIG1-216ENST00000598938 SAA4P35542 130 aa14.78□□□□□ -0.04
LIG1-216ENST00000598938 SOX6P35712 828 aa14.78□□□□□ -0.04
LIG1-216ENST00000598938 COMPP49747 757 aaPredicted RBP14.78□□□□□ -0.04
LIG1-216ENST00000598938 HMGN3Q15651 99 aa14.78□□□□□ -0.04
LIG1-216ENST00000598938 ZNF260Q3ZCT1 412 aa14.78□□□□□ -0.04
LIG1-216ENST00000598938 ZNF626Q68DY1 528 aa14.78□□□□□ -0.04
LIG1-216ENST00000598938 OR52M1Q8NGK5 317 aa14.78□□□□□ -0.04
LIG1-216ENST00000598938 UBALD1Q8TB05 177 aa14.78□□□□□ -0.04
LIG1-216ENST00000598938 PHF21AQ96BD5 680 aa14.78□□□□□ -0.04
LIG1-216ENST00000598938 ZNF48Q96MX3 618 aaPredicted RBP14.78□□□□□ -0.04
LIG1-216ENST00000598938 CLEC7AQ9BXN2 247 aa14.78□□□□□ -0.04
LIG1-216ENST00000598938 TAF9BQ9HBM6 251 aa14.78□□□□□ -0.04
LIG1-216ENST00000598938 ZNF286AQ9HBT8 521 aa14.78□□□□□ -0.04
LIG1-216ENST00000598938 RAB9BQ9NP90 201 aa14.78□□□□□ -0.04
LIG1-216ENST00000598938 KCNIP1Q9NZI2 227 aa14.78□□□□□ -0.04
LIG1-216ENST00000598938 CCDC59Q9P031 241 aaKnown RBP14.78□□□□□ -0.04
LIG1-216ENST00000598938 KIAA2026Q5HYC2 2103 aa14.78□□□□□ -0.04
LIG1-216ENST00000598938 A0A0U1RQK1 487 aa14.77□□□□□ -0.05
LIG1-216ENST00000598938 CCDC160A6NGH7 325 aa14.77□□□□□ -0.05
LIG1-216ENST00000598938 NFYBP25208 207 aa14.77□□□□□ -0.05
LIG1-216ENST00000598938 DEFB112Q30KQ8 113 aa14.77□□□□□ -0.05
LIG1-216ENST00000598938 TMEM30BQ3MIR4 351 aa14.77□□□□□ -0.05
LIG1-216ENST00000598938 UTF1Q5T230 341 aa14.77□□□□□ -0.05
LIG1-216ENST00000598938 HACD4Q5VWC8 232 aa14.77□□□□□ -0.05
LIG1-216ENST00000598938 ABHD12Q8N2K0 398 aa14.77□□□□□ -0.05
LIG1-216ENST00000598938 OR1L1Q8NH94 360 aa14.77□□□□□ -0.05
LIG1-216ENST00000598938 S100A16Q96FQ6 103 aaKnown RBP14.77□□□□□ -0.05
LIG1-216ENST00000598938 AJUBAQ96IF1 538 aa14.77□□□□□ -0.05
LIG1-216ENST00000598938 PRDM13Q9H4Q3 707 aa14.77□□□□□ -0.05
LIG1-216ENST00000598938 Q9N2K0 584 aa14.77□□□□□ -0.05
LIG1-216ENST00000598938 DIABLOQ9NR28 239 aa14.77□□□□□ -0.05
LIG1-216ENST00000598938 RSL24D1Q9UHA3 163 aaKnown RBP14.77□□□□□ -0.05
LIG1-216ENST00000598938 ELF5Q9UKW6 265 aaPredicted RBP14.77□□□□□ -0.05
LIG1-216ENST00000598938 MGAT4AQ9UM21 535 aa14.77□□□□□ -0.05
LIG1-216ENST00000598938 MEIOCA2RUB1 952 aa14.76□□□□□ -0.05
LIG1-216ENST00000598938 FAM172BPA6NC97 362 aa14.76□□□□□ -0.05
LIG1-216ENST00000598938 XRCC3O43542 346 aa14.76□□□□□ -0.05
LIG1-216ENST00000598938 APOA1P02647 267 aa14.76□□□□□ -0.05
LIG1-216ENST00000598938 ARG1P05089 322 aa14.76□□□□□ -0.05
LIG1-216ENST00000598938 EIF4EP06730 217 aaKnown RBP14.76□□□□□ -0.05
LIG1-216ENST00000598938 LOXL3P58215 753 aa14.76□□□□□ -0.05
LIG1-216ENST00000598938 MRPS15P82914 257 aaKnown RBP14.76□□□□□ -0.05
LIG1-216ENST00000598938 LTC4SQ16873 150 aa14.76□□□□□ -0.05
LIG1-216ENST00000598938 PNLIPRP3Q17RR3 467 aa14.76□□□□□ -0.05
LIG1-216ENST00000598938 MZT2AQ6P582 158 aa14.76□□□□□ -0.05
LIG1-216ENST00000598938 C5orf24Q7Z6I8 188 aa14.76□□□□□ -0.05
LIG1-216ENST00000598938 SIGLECL1Q8N7X8 197 aa14.76□□□□□ -0.05
LIG1-216ENST00000598938 SETD6Q8TBK2 473 aa14.76□□□□□ -0.05
LIG1-216ENST00000598938 ZNF418Q8TF45 676 aaPredicted RBP14.76□□□□□ -0.05
LIG1-216ENST00000598938 OCEL1Q9H607 264 aa14.76□□□□□ -0.05
LIG1-216ENST00000598938 GFOD1Q9NXC2 390 aa14.76□□□□□ -0.05
LIG1-216ENST00000598938 TRAV18A0A075B6X5 111 aa14.75□□□□□ -0.05
LIG1-216ENST00000598938 MDFIC2A0A1B0GVS7 189 aa14.75□□□□□ -0.05
LIG1-216ENST00000598938 SMIM31A0A1B0GVY4 71 aa14.75□□□□□ -0.05
LIG1-216ENST00000598938 TMEM235A6NFC5 223 aa14.75□□□□□ -0.05
LIG1-216ENST00000598938 SDCBPO00560 298 aaPredicted RBP14.75□□□□□ -0.05
LIG1-216ENST00000598938 IGLV1-47P01700 117 aa14.75□□□□□ -0.05
LIG1-216ENST00000598938 MELTFP08582 738 aa14.75□□□□□ -0.05
LIG1-216ENST00000598938 FCGR3AP08637 254 aa14.75□□□□□ -0.05
LIG1-216ENST00000598938 HLA-DRB3P79483 266 aa14.75□□□□□ -0.05
LIG1-216ENST00000598938 ARFRP1Q13795 201 aa14.75□□□□□ -0.05
LIG1-216ENST00000598938 PRR18Q8N4B5 295 aa14.75□□□□□ -0.05
LIG1-216ENST00000598938 BEND2Q8NDZ0 799 aa14.75□□□□□ -0.05
LIG1-216ENST00000598938 AUNIPQ9H7T9 357 aa14.75□□□□□ -0.05
LIG1-216ENST00000598938 TBL2Q9Y4P3 447 aaKnown RBP14.75□□□□□ -0.05
LIG1-216ENST00000598938 HPGDSO60760 199 aa14.74□□□□□ -0.05
LIG1-216ENST00000598938 ELK1P19419 428 aa14.74□□□□□ -0.05
LIG1-216ENST00000598938 DTYMKP23919 212 aa14.74□□□□□ -0.05
LIG1-216ENST00000598938 LGALS4P56470 323 aa14.74□□□□□ -0.05
LIG1-216ENST00000598938 HTD2P86397 168 aa14.74□□□□□ -0.05
LIG1-216ENST00000598938 PITPNAQ00169 270 aa14.74□□□□□ -0.05
LIG1-216ENST00000598938 SRSF7Q16629 238 aaKnown RBP eCLIP14.74□□□□□ -0.05
LIG1-216ENST00000598938 Q3ZCU0 254 aa14.74□□□□□ -0.05
LIG1-216ENST00000598938 LDLRAD2Q5SZI1 272 aa14.74□□□□□ -0.05
LIG1-216ENST00000598938 OR4P4Q8NGL7 312 aa14.74□□□□□ -0.05
LIG1-216ENST00000598938 OR9G1Q8NH87 305 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms