RNA–Protein interactions for RNA: ENST00000596436.5

USHBP1-206, Transcript of USH1 protein network component harmonin binding protein 1, human

TSL 3

Gene USHBP1, Length 487 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USHBP1-206	ENST00000596436	SOCS1	O15524	211 aa		12.83	□□□□□ -0.36
USHBP1-206	ENST00000596436	IL1A	P01583	271 aa		12.83	□□□□□ -0.36
USHBP1-206	ENST00000596436	SLC2A2	P11168	524 aa	Predicted RBP	12.83	□□□□□ -0.36
USHBP1-206	ENST00000596436	JUNB	P17275	347 aa	Predicted RBP	12.83	□□□□□ -0.36
USHBP1-206	ENST00000596436	PSMD7	P51665	324 aa		12.83	□□□□□ -0.36
USHBP1-206	ENST00000596436	C2orf76	Q3KRA6	126 aa		12.83	□□□□□ -0.36
USHBP1-206	ENST00000596436	NKAPL	Q5M9Q1	402 aa		12.83	□□□□□ -0.36
USHBP1-206	ENST00000596436	DYNAP	Q8N1N2	210 aa		12.83	□□□□□ -0.36
USHBP1-206	ENST00000596436	GAPT	Q8N292	157 aa		12.83	□□□□□ -0.36
USHBP1-206	ENST00000596436	OR4C13	Q8NGP0	309 aa		12.83	□□□□□ -0.36
USHBP1-206	ENST00000596436	OR4K15	Q8NH41	348 aa		12.83	□□□□□ -0.36
USHBP1-206	ENST00000596436	CCDC107	Q8WV48	283 aa		12.83	□□□□□ -0.36
USHBP1-206	ENST00000596436	SULT4A1	Q9BR01	284 aa		12.83	□□□□□ -0.36
USHBP1-206	ENST00000596436	CENPO	Q9BU64	300 aa		12.83	□□□□□ -0.36
USHBP1-206	ENST00000596436	LINC00574	Q9H8X3	128 aa		12.83	□□□□□ -0.36
USHBP1-206	ENST00000596436	ZNF286A	Q9HBT8	521 aa		12.83	□□□□□ -0.36
USHBP1-206	ENST00000596436	ETAA1	Q9NY74	926 aa		12.83	□□□□□ -0.36
USHBP1-206	ENST00000596436	TMEM272	A0A1B0GTI8	110 aa		12.82	□□□□□ -0.36
USHBP1-206	ENST00000596436	FOXI3	A8MTJ6	420 aa	Predicted RBP	12.82	□□□□□ -0.36
USHBP1-206	ENST00000596436	NPIPB11	E5RHQ5	1161 aa		12.82	□□□□□ -0.36
USHBP1-206	ENST00000596436	GLA	P06280	429 aa		12.82	□□□□□ -0.36
USHBP1-206	ENST00000596436	CLEC2L	P0C7M8	214 aa		12.82	□□□□□ -0.36
USHBP1-206	ENST00000596436	TGFBR1	P36897	503 aa		12.82	□□□□□ -0.36
USHBP1-206	ENST00000596436	DYNC1I2	Q13409	638 aa	Known RBP	12.82	□□□□□ -0.36
USHBP1-206	ENST00000596436	RBM39	Q14498	530 aa	Known RBP	12.82	□□□□□ -0.36
USHBP1-206	ENST00000596436	LTC4S	Q16873	150 aa		12.82	□□□□□ -0.36
USHBP1-206	ENST00000596436	LRRC75B	Q2VPJ9	315 aa		12.82	□□□□□ -0.36
USHBP1-206	ENST00000596436	C6orf201	Q7Z4U5	140 aa		12.82	□□□□□ -0.36
USHBP1-206	ENST00000596436	KLHDC1	Q8N7A1	406 aa		12.82	□□□□□ -0.36
USHBP1-206	ENST00000596436	ZNF565	Q8N9K5	539 aa		12.82	□□□□□ -0.36
USHBP1-206	ENST00000596436	RFESD	Q8TAC1	157 aa		12.82	□□□□□ -0.36
USHBP1-206	ENST00000596436	UBALD1	Q8TB05	177 aa		12.82	□□□□□ -0.36
USHBP1-206	ENST00000596436	PIFO	Q8TCI5	191 aa		12.82	□□□□□ -0.36
USHBP1-206	ENST00000596436	CLEC7A	Q9BXN2	247 aa		12.82	□□□□□ -0.36
USHBP1-206	ENST00000596436	RAB18	Q9NP72	206 aa		12.82	□□□□□ -0.36
USHBP1-206	ENST00000596436	IDI2-AS1	Q9NZ38	188 aa		12.82	□□□□□ -0.36
USHBP1-206	ENST00000596436		A0A087X0M5	115 aa		12.81	□□□□□ -0.36
USHBP1-206	ENST00000596436		A0A1B0GX30	115 aa		12.81	□□□□□ -0.36
USHBP1-206	ENST00000596436	C15orf65	H3BRN8	121 aa		12.81	□□□□□ -0.36
USHBP1-206	ENST00000596436	PRB2	P02812	416 aa	Predicted RBP	12.81	□□□□□ -0.36
USHBP1-206	ENST00000596436	NFYB	P25208	207 aa		12.81	□□□□□ -0.36
USHBP1-206	ENST00000596436	CD34	P28906	385 aa		12.81	□□□□□ -0.36
USHBP1-206	ENST00000596436	SDC2	P34741	201 aa		12.81	□□□□□ -0.36
USHBP1-206	ENST00000596436	FAM189A2	Q15884	450 aa		12.81	□□□□□ -0.36
USHBP1-206	ENST00000596436	OR52W1	Q6IF63	320 aa		12.81	□□□□□ -0.36
USHBP1-206	ENST00000596436	FAM53A	Q6NSI3	398 aa	Predicted RBP	12.81	□□□□□ -0.36
USHBP1-206	ENST00000596436	LIAT1	Q6ZQX7	453 aa		12.81	□□□□□ -0.36
USHBP1-206	ENST00000596436	C5orf24	Q7Z6I8	188 aa		12.81	□□□□□ -0.36
USHBP1-206	ENST00000596436	ABHD12	Q8N2K0	398 aa		12.81	□□□□□ -0.36
USHBP1-206	ENST00000596436	FAM89B	Q8N5H3	189 aa		12.81	□□□□□ -0.36
USHBP1-206	ENST00000596436	OR4P4	Q8NGL7	312 aa		12.81	□□□□□ -0.36
USHBP1-206	ENST00000596436	OR2T6	Q8NHC8	308 aa		12.81	□□□□□ -0.36
USHBP1-206	ENST00000596436	MRPL30	Q8TCC3	161 aa	Known RBP	12.81	□□□□□ -0.36
USHBP1-206	ENST00000596436	WIPF2	Q8TF74	440 aa	Predicted RBP	12.81	□□□□□ -0.36
USHBP1-206	ENST00000596436	LEAP2	Q969E1	77 aa		12.81	□□□□□ -0.36
USHBP1-206	ENST00000596436	KCTD7	Q96MP8	289 aa		12.81	□□□□□ -0.36
USHBP1-206	ENST00000596436	FAAP24	Q9BTP7	215 aa		12.81	□□□□□ -0.36
USHBP1-206	ENST00000596436	LIN7B	Q9HAP6	207 aa		12.81	□□□□□ -0.36
USHBP1-206	ENST00000596436	VCX3A	Q9NNX9	186 aa		12.81	□□□□□ -0.36
USHBP1-206	ENST00000596436	TBL2	Q9Y4P3	447 aa	Known RBP	12.81	□□□□□ -0.36
USHBP1-206	ENST00000596436	NOTO	A8MTQ0	251 aa		12.8	□□□□□ -0.36
USHBP1-206	ENST00000596436	CHST1	O43916	411 aa		12.8	□□□□□ -0.36
USHBP1-206	ENST00000596436	IGLV1-47	P01700	117 aa		12.8	□□□□□ -0.36
USHBP1-206	ENST00000596436	RCC1	P18754	421 aa	Predicted RBP	12.8	□□□□□ -0.36
USHBP1-206	ENST00000596436	BLVRB	P30043	206 aa	Predicted RBP	12.8	□□□□□ -0.36
USHBP1-206	ENST00000596436	LGALS4	P56470	323 aa		12.8	□□□□□ -0.36
USHBP1-206	ENST00000596436	MXD1	Q05195	221 aa		12.8	□□□□□ -0.36
USHBP1-206	ENST00000596436	TPRA1	Q86W33	373 aa		12.8	□□□□□ -0.36
USHBP1-206	ENST00000596436		Q8N2B8	174 aa		12.8	□□□□□ -0.36
USHBP1-206	ENST00000596436	C11orf44	Q8N8P7	122 aa		12.8	□□□□□ -0.36
USHBP1-206	ENST00000596436	DTX3	Q8N9I9	347 aa		12.8	□□□□□ -0.36
USHBP1-206	ENST00000596436	NEDD4L	Q96PU5	975 aa		12.8	□□□□□ -0.36
USHBP1-206	ENST00000596436	URM1	Q9BTM9	101 aa	Known RBP	12.8	□□□□□ -0.36
USHBP1-206	ENST00000596436	RYR3	Q15413	4870 aa		12.8	□□□□□ -0.36
USHBP1-206	ENST00000596436	NOTCH3	Q9UM47	2321 aa		12.8	□□□□□ -0.36
USHBP1-206	ENST00000596436	VGLL3	A8MV65	326 aa		12.79	□□□□□ -0.36
USHBP1-206	ENST00000596436	C12orf77	C9JDV5	145 aa		12.79	□□□□□ -0.36
USHBP1-206	ENST00000596436	ORC5	O43913	435 aa		12.79	□□□□□ -0.36
USHBP1-206	ENST00000596436	CA11	O75493	328 aa		12.79	□□□□□ -0.36
USHBP1-206	ENST00000596436	IGHV3-7	P01780	117 aa		12.79	□□□□□ -0.36
USHBP1-206	ENST00000596436	VEGFC	P49767	419 aa		12.79	□□□□□ -0.36
USHBP1-206	ENST00000596436	TMEM50B	P56557	158 aa		12.79	□□□□□ -0.36
USHBP1-206	ENST00000596436	LY6E	Q16553	131 aa		12.79	□□□□□ -0.36
USHBP1-206	ENST00000596436	PLA1A	Q53H76	456 aa		12.79	□□□□□ -0.36
USHBP1-206	ENST00000596436	ARL11	Q969Q4	196 aa		12.79	□□□□□ -0.36
USHBP1-206	ENST00000596436	NPFFR1	Q9GZQ6	430 aa		12.79	□□□□□ -0.36
USHBP1-206	ENST00000596436	SERTAD4	Q9NUC0	356 aa		12.79	□□□□□ -0.36
USHBP1-206	ENST00000596436	TRAPPC2L	Q9UL33	140 aa		12.79	□□□□□ -0.36
USHBP1-206	ENST00000596436	ADARB2-AS1	A8MUL3	147 aa		12.78	□□□□□ -0.36
USHBP1-206	ENST00000596436		H3BUI4	141 aa		12.78	□□□□□ -0.36
USHBP1-206	ENST00000596436	GZMH	P20718	246 aa		12.78	□□□□□ -0.36
USHBP1-206	ENST00000596436	LSM3	P62310	102 aa	Known RBP	12.78	□□□□□ -0.36
USHBP1-206	ENST00000596436	SSX2	Q16385	188 aa		12.78	□□□□□ -0.36
USHBP1-206	ENST00000596436	HLA-DRB5	Q30154	266 aa		12.78	□□□□□ -0.36
USHBP1-206	ENST00000596436	MOGAT2	Q3SYC2	334 aa		12.78	□□□□□ -0.36
USHBP1-206	ENST00000596436	OXLD1	Q5BKU9	147 aa		12.78	□□□□□ -0.36
USHBP1-206	ENST00000596436	PLAC9	Q5JTB6	97 aa		12.78	□□□□□ -0.36
USHBP1-206	ENST00000596436	MINOS1	Q5TGZ0	78 aa		12.78	□□□□□ -0.36
USHBP1-206	ENST00000596436	SFXN4	Q6P4A7	337 aa		12.78	□□□□□ -0.36
USHBP1-206	ENST00000596436	OR10A7	Q8NGE5	316 aa		12.78	□□□□□ -0.36

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