RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 SLC6A1P30531 599 aa10.82□□□□□ -0.68
CCDC40-216ENST00000576241 ST3GAL4Q11206 333 aa10.82□□□□□ -0.68
CCDC40-216ENST00000576241 TMEM30BQ3MIR4 351 aa10.82□□□□□ -0.68
CCDC40-216ENST00000576241 C6orf183Q5T699 404 aa10.82□□□□□ -0.68
CCDC40-216ENST00000576241 GLIPR1L1Q6UWM5 242 aa10.82□□□□□ -0.68
CCDC40-216ENST00000576241 OR2W3Q7Z3T1 314 aa10.82□□□□□ -0.68
CCDC40-216ENST00000576241 TGIF2LXQ8IUE1 241 aa10.82□□□□□ -0.68
CCDC40-216ENST00000576241 DHRSXQ8N5I4 330 aa10.82□□□□□ -0.68
CCDC40-216ENST00000576241 LINC00311Q8N616 119 aa10.82□□□□□ -0.68
CCDC40-216ENST00000576241 PACRGLQ8N7B6 248 aa10.82□□□□□ -0.68
CCDC40-216ENST00000576241 OR2T10Q8NGZ9 312 aa10.82□□□□□ -0.68
CCDC40-216ENST00000576241 MUL1Q969V5 352 aa10.82□□□□□ -0.68
CCDC40-216ENST00000576241 EAF1Q96JC9 268 aaPredicted RBP10.82□□□□□ -0.68
CCDC40-216ENST00000576241 PGLYRP3Q96LB9 341 aa10.82□□□□□ -0.68
CCDC40-216ENST00000576241 OR14A2Q96R54 314 aa10.82□□□□□ -0.68
CCDC40-216ENST00000576241 ETAA1Q9NY74 926 aa10.82□□□□□ -0.68
CCDC40-216ENST00000576241 GNG12Q9UBI6 72 aa10.82□□□□□ -0.68
CCDC40-216ENST00000576241 LINC00527Q9UJ94 153 aa10.82□□□□□ -0.68
CCDC40-216ENST00000576241 DYNC2H1Q8NCM8 4307 aaKnown RBP10.82□□□□□ -0.68
CCDC40-216ENST00000576241 TRBV5-7A0A0A0MS05 114 aa10.81□□□□□ -0.68
CCDC40-216ENST00000576241 IGHV3-43A0A0B4J1X8 118 aa10.81□□□□□ -0.68
CCDC40-216ENST00000576241 PNMA8CA0A1B0GUJ8 204 aa10.81□□□□□ -0.68
CCDC40-216ENST00000576241 AP4M1O00189 453 aa10.81□□□□□ -0.68
CCDC40-216ENST00000576241 TXNL1O43396 289 aa10.81□□□□□ -0.68
CCDC40-216ENST00000576241 IGHV3-43DP0DP04 118 aa10.81□□□□□ -0.68
CCDC40-216ENST00000576241 THBS3P49746 956 aa10.81□□□□□ -0.68
CCDC40-216ENST00000576241 RPS11P62280 158 aaKnown RBP eCLIP10.81□□□□□ -0.68
CCDC40-216ENST00000576241 EBI3Q14213 229 aa10.81□□□□□ -0.68
CCDC40-216ENST00000576241 Q3ZCU0 254 aa10.81□□□□□ -0.68
CCDC40-216ENST00000576241 AWAT2Q6E213 333 aa10.81□□□□□ -0.68
CCDC40-216ENST00000576241 RAB12Q6IQ22 244 aa10.81□□□□□ -0.68
CCDC40-216ENST00000576241 TRAT1Q6PIZ9 186 aa10.81□□□□□ -0.68
CCDC40-216ENST00000576241 CDH26Q8IXH8 852 aa10.81□□□□□ -0.68
CCDC40-216ENST00000576241 MRPL41Q8IXM3 137 aaKnown RBP10.81□□□□□ -0.68
CCDC40-216ENST00000576241 STPG2Q8N412 459 aa10.81□□□□□ -0.68
CCDC40-216ENST00000576241 PRR18Q8N4B5 295 aa10.81□□□□□ -0.68
CCDC40-216ENST00000576241 KLHL30-AS1Q8NEE0 82 aa10.81□□□□□ -0.68
CCDC40-216ENST00000576241 RTN4IP1Q8WWV3 396 aaPredicted RBP10.81□□□□□ -0.68
CCDC40-216ENST00000576241 THRSPQ92748 146 aa10.81□□□□□ -0.68
CCDC40-216ENST00000576241 MCRIP2Q9BUT9 160 aaKnown RBP10.81□□□□□ -0.68
CCDC40-216ENST00000576241 GON7Q9BXV9 100 aa10.81□□□□□ -0.68
CCDC40-216ENST00000576241 LIN7CQ9NUP9 197 aaKnown RBP10.81□□□□□ -0.68
CCDC40-216ENST00000576241 RCC2Q9P258 522 aaKnown RBP10.81□□□□□ -0.68
CCDC40-216ENST00000576241 A0A1W2PPK0 400 aa10.8□□□□□ -0.68
CCDC40-216ENST00000576241 FAM90A10PA6NDY2 464 aa10.8□□□□□ -0.68
CCDC40-216ENST00000576241 FAM90A7PA6NKC0 464 aa10.8□□□□□ -0.68
CCDC40-216ENST00000576241 FAM90A23PA8MXZ1 464 aa10.8□□□□□ -0.68
CCDC40-216ENST00000576241 C12orf77C9JDV5 145 aa10.8□□□□□ -0.68
CCDC40-216ENST00000576241 K7EIL1 84 aa10.8□□□□□ -0.68
CCDC40-216ENST00000576241 MYL12BO14950 172 aa10.8□□□□□ -0.68
CCDC40-216ENST00000576241 MOSP00540 346 aa10.8□□□□□ -0.68
CCDC40-216ENST00000576241 MAS1P04201 325 aa10.8□□□□□ -0.68
CCDC40-216ENST00000576241 CD1BP29016 333 aa10.8□□□□□ -0.68
CCDC40-216ENST00000576241 GPR12P47775 334 aa10.8□□□□□ -0.68
CCDC40-216ENST00000576241 DOC2BQ14184 412 aa10.8□□□□□ -0.68
CCDC40-216ENST00000576241 SYT6Q5T7P8 510 aaPredicted RBP10.8□□□□□ -0.68
CCDC40-216ENST00000576241 ETV3LQ6ZN32 361 aa10.8□□□□□ -0.68
CCDC40-216ENST00000576241 C8orf86Q6ZUL3 223 aa10.8□□□□□ -0.68
CCDC40-216ENST00000576241 C8orf59Q8N0T1 100 aaPredicted RBP10.8□□□□□ -0.68
CCDC40-216ENST00000576241 ZNF485Q8NCK3 441 aa10.8□□□□□ -0.68
CCDC40-216ENST00000576241 OR4K15Q8NH41 348 aa10.8□□□□□ -0.68
CCDC40-216ENST00000576241 GGHQ92820 318 aa10.8□□□□□ -0.68
CCDC40-216ENST00000576241 SELENOIQ9C0D9 397 aa10.8□□□□□ -0.68
CCDC40-216ENST00000576241 ABCG5Q9H222 651 aa10.8□□□□□ -0.68
CCDC40-216ENST00000576241 CNOT2Q9NZN8 540 aaKnown RBP10.8□□□□□ -0.68
CCDC40-216ENST00000576241 PEX16Q9Y5Y5 336 aa10.8□□□□□ -0.68
CCDC40-216ENST00000576241 RRP9O43818 475 aaKnown RBP10.79□□□□□ -0.68
CCDC40-216ENST00000576241 CA11O75493 328 aa10.79□□□□□ -0.68
CCDC40-216ENST00000576241 CRTAPO75718 401 aaPredicted RBP10.79□□□□□ -0.68
CCDC40-216ENST00000576241 HBZP02008 142 aa10.79□□□□□ -0.68
CCDC40-216ENST00000576241 MGMTP16455 207 aa10.79□□□□□ -0.68
CCDC40-216ENST00000576241 CELP19835 753 aa10.79□□□□□ -0.68
CCDC40-216ENST00000576241 MAPK3P27361 379 aaPredicted RBP10.79□□□□□ -0.68
CCDC40-216ENST00000576241 HOXD3P31249 432 aaPredicted RBP10.79□□□□□ -0.68
CCDC40-216ENST00000576241 CAPGP40121 348 aa10.79□□□□□ -0.68
CCDC40-216ENST00000576241 MYCNOSP40205 109 aa10.79□□□□□ -0.68
CCDC40-216ENST00000576241 ADARB1P78563 741 aaKnown RBP10.79□□□□□ -0.68
CCDC40-216ENST00000576241 EGFEM1PQ0D2K5 195 aa10.79□□□□□ -0.68
CCDC40-216ENST00000576241 DEFB121Q5J5C9 76 aa10.79□□□□□ -0.68
CCDC40-216ENST00000576241 FAM53AQ6NSI3 398 aaPredicted RBP10.79□□□□□ -0.68
CCDC40-216ENST00000576241 TEX38Q6PEX7 206 aa10.79□□□□□ -0.68
CCDC40-216ENST00000576241 SLC25A48Q6ZT89 311 aaKnown RBP10.79□□□□□ -0.68
CCDC40-216ENST00000576241 ZNF695Q8IW36 515 aa10.79□□□□□ -0.68
CCDC40-216ENST00000576241 Q8N6K4 173 aa10.79□□□□□ -0.68
CCDC40-216ENST00000576241 NKAIN3Q8N8D7 197 aa10.79□□□□□ -0.68
CCDC40-216ENST00000576241 Q8N9W7 124 aa10.79□□□□□ -0.68
CCDC40-216ENST00000576241 TMEM104Q8NE00 496 aa10.79□□□□□ -0.68
CCDC40-216ENST00000576241 OR8H1Q8NGG4 311 aa10.79□□□□□ -0.68
CCDC40-216ENST00000576241 OR10V1Q8NGI7 309 aa10.79□□□□□ -0.68
CCDC40-216ENST00000576241 ST6GALNAC6Q969X2 333 aa10.79□□□□□ -0.68
CCDC40-216ENST00000576241 DERL3Q96Q80 235 aa10.79□□□□□ -0.68
CCDC40-216ENST00000576241 RASL11BQ9BPW5 248 aa10.79□□□□□ -0.68
CCDC40-216ENST00000576241 BANF2Q9H503 90 aa10.79□□□□□ -0.68
CCDC40-216ENST00000576241 SLC31A2O15432 143 aa10.78□□□□□ -0.68
CCDC40-216ENST00000576241 GLAP06280 429 aa10.78□□□□□ -0.68
CCDC40-216ENST00000576241 FUT3P21217 361 aa10.78□□□□□ -0.68
CCDC40-216ENST00000576241 ZNF137PP52743 207 aa10.78□□□□□ -0.68
CCDC40-216ENST00000576241 WNT4P56705 351 aa10.78□□□□□ -0.68
CCDC40-216ENST00000576241 KRTAP10-11P60412 298 aa10.78□□□□□ -0.68
CCDC40-216ENST00000576241 RCN1Q15293 331 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms