RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 Q8N9W7 124 aa12.66□□□□□ -0.38
CLN3-229ENST00000567963 TMEM104Q8NE00 496 aa12.66□□□□□ -0.38
CLN3-229ENST00000567963 KLHL30-AS1Q8NEE0 82 aa12.66□□□□□ -0.38
CLN3-229ENST00000567963 MCRIP2Q9BUT9 160 aaKnown RBP12.66□□□□□ -0.38
CLN3-229ENST00000567963 SPACA1Q9HBV2 294 aa12.66□□□□□ -0.38
CLN3-229ENST00000567963 LIN7CQ9NUP9 197 aaKnown RBP12.66□□□□□ -0.38
CLN3-229ENST00000567963 CHCHD3Q9NX63 227 aaKnown RBP12.66□□□□□ -0.38
CLN3-229ENST00000567963 RCC2Q9P258 522 aaKnown RBP12.66□□□□□ -0.38
CLN3-229ENST00000567963 NUDT19A8MXV4 375 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 MCRIP1C9JLW8 97 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 FSTP19883 344 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 IL3RAP26951 378 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 MED21Q13503 144 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 SYT6Q5T7P8 510 aaPredicted RBP12.65□□□□□ -0.38
CLN3-229ENST00000567963 TTC23Q5W5X9 447 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 TEX38Q6PEX7 206 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 GLIPR1L1Q6UWM5 242 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 ZFP41Q8N8Y5 198 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 DPF1Q92782 380 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 GGHQ92820 318 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 MRPS24Q96EL2 167 aaKnown RBP12.65□□□□□ -0.38
CLN3-229ENST00000567963 P2RX4Q99571 388 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 PLSCR3Q9NRY6 295 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 TRAPPC2LQ9UL33 140 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 MRPS28Q9Y2Q9 187 aaKnown RBP12.65□□□□□ -0.38
CLN3-229ENST00000567963 RRP15Q9Y3B9 282 aaKnown RBP12.65□□□□□ -0.38
CLN3-229ENST00000567963 TRBV5-7A0A0A0MS05 114 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 A0A1W2PPK0 400 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 C12orf77C9JDV5 145 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 AP4M1O00189 453 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 SLC31A2O15432 143 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 GPR12P47775 334 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 ZNF134P52741 427 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 PNLIPRP3Q17RR3 467 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 VAX1Q5SQQ9 334 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 SLC25A48Q6ZT89 311 aaKnown RBP12.65□□□□□ -0.38
CLN3-229ENST00000567963 ZNF695Q8IW36 515 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 JAGN1Q8N5M9 183 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 ZNF439Q8NDP4 499 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 CYGBQ8WWM9 190 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 MUL1Q969V5 352 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 OR14A2Q96R54 314 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 GON7Q9BXV9 100 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 ETAA1Q9NY74 926 aa12.65□□□□□ -0.38
CLN3-229ENST00000567963 ZNF736B4DX44 427 aaPredicted RBP12.64□□□□□ -0.39
CLN3-229ENST00000567963 SPINT2O43291 252 aa12.64□□□□□ -0.39
CLN3-229ENST00000567963 MOSP00540 346 aa12.64□□□□□ -0.39
CLN3-229ENST00000567963 ZNF137PP52743 207 aa12.64□□□□□ -0.39
CLN3-229ENST00000567963 ST3GAL4Q11206 333 aa12.64□□□□□ -0.39
CLN3-229ENST00000567963 LRRC36Q1X8D7 754 aa12.64□□□□□ -0.39
CLN3-229ENST00000567963 RAB12Q6IQ22 244 aa12.64□□□□□ -0.39
CLN3-229ENST00000567963 CDH26Q8IXH8 852 aa12.64□□□□□ -0.39
CLN3-229ENST00000567963 GAPTQ8N292 157 aa12.64□□□□□ -0.39
CLN3-229ENST00000567963 SETD9Q8NE22 299 aa12.64□□□□□ -0.39
CLN3-229ENST00000567963 OR4K15Q8NH41 348 aa12.64□□□□□ -0.39
CLN3-229ENST00000567963 S1PR3Q99500 378 aa12.64□□□□□ -0.39
CLN3-229ENST00000567963 DCLRE1BQ9H816 532 aa12.64□□□□□ -0.39
CLN3-229ENST00000567963 RAB9BQ9NP90 201 aa12.64□□□□□ -0.39
CLN3-229ENST00000567963 TXNL1O43396 289 aa12.63□□□□□ -0.39
CLN3-229ENST00000567963 MAS1P04201 325 aa12.63□□□□□ -0.39
CLN3-229ENST00000567963 RPLP1P05386 114 aaKnown RBP12.63□□□□□ -0.39
CLN3-229ENST00000567963 ADARB1P78563 741 aaKnown RBP12.63□□□□□ -0.39
CLN3-229ENST00000567963 CT45A1Q5HYN5 189 aa12.63□□□□□ -0.39
CLN3-229ENST00000567963 C6orf183Q5T699 404 aa12.63□□□□□ -0.39
CLN3-229ENST00000567963 AWAT2Q6E213 333 aa12.63□□□□□ -0.39
CLN3-229ENST00000567963 LYPD6Q86Y78 171 aa12.63□□□□□ -0.39
CLN3-229ENST00000567963 PRR18Q8N4B5 295 aa12.63□□□□□ -0.39
CLN3-229ENST00000567963 OR8H1Q8NGG4 311 aa12.63□□□□□ -0.39
CLN3-229ENST00000567963 CT45A3Q8NHU0 189 aa12.63□□□□□ -0.39
CLN3-229ENST00000567963 RAX2Q96IS3 184 aa12.63□□□□□ -0.39
CLN3-229ENST00000567963 DUX3Q96PT4 197 aa12.63□□□□□ -0.39
CLN3-229ENST00000567963 RASL11BQ9BPW5 248 aa12.63□□□□□ -0.39
CLN3-229ENST00000567963 BANF2Q9H503 90 aa12.63□□□□□ -0.39
CLN3-229ENST00000567963 GNG12Q9UBI6 72 aa12.63□□□□□ -0.39
CLN3-229ENST00000567963 PEX16Q9Y5Y5 336 aa12.63□□□□□ -0.39
CLN3-229ENST00000567963 DNAH9Q9NYC9 4486 aa12.63□□□□□ -0.39
CLN3-229ENST00000567963 PNMA8CA0A1B0GUJ8 204 aa12.62□□□□□ -0.39
CLN3-229ENST00000567963 FAM90A10PA6NDY2 464 aa12.62□□□□□ -0.39
CLN3-229ENST00000567963 FAM90A7PA6NKC0 464 aa12.62□□□□□ -0.39
CLN3-229ENST00000567963 FAM90A23PA8MXZ1 464 aa12.62□□□□□ -0.39
CLN3-229ENST00000567963 H0YHG0 523 aa12.62□□□□□ -0.39
CLN3-229ENST00000567963 CCL24O00175 119 aa12.62□□□□□ -0.39
CLN3-229ENST00000567963 SC5DO75845 299 aa12.62□□□□□ -0.39
CLN3-229ENST00000567963 HBZP02008 142 aa12.62□□□□□ -0.39
CLN3-229ENST00000567963 RCC1P18754 421 aaPredicted RBP12.62□□□□□ -0.39
CLN3-229ENST00000567963 CAPGP40121 348 aa12.62□□□□□ -0.39
CLN3-229ENST00000567963 VHLP40337 213 aa12.62□□□□□ -0.39
CLN3-229ENST00000567963 F2RL1P55085 397 aa12.62□□□□□ -0.39
CLN3-229ENST00000567963 TAS2R43P59537 309 aa12.62□□□□□ -0.39
CLN3-229ENST00000567963 GPR50Q13585 617 aa12.62□□□□□ -0.39
CLN3-229ENST00000567963 DOC2BQ14184 412 aa12.62□□□□□ -0.39
CLN3-229ENST00000567963 TMEM30BQ3MIR4 351 aa12.62□□□□□ -0.39
CLN3-229ENST00000567963 STEAP3Q658P3 488 aa12.62□□□□□ -0.39
CLN3-229ENST00000567963 DHRSXQ8N5I4 330 aa12.62□□□□□ -0.39
CLN3-229ENST00000567963 FAM71E2Q8N5Q1 922 aa12.62□□□□□ -0.39
CLN3-229ENST00000567963 OR10V1Q8NGI7 309 aa12.62□□□□□ -0.39
CLN3-229ENST00000567963 OR1L1Q8NH94 360 aa12.62□□□□□ -0.39
CLN3-229ENST00000567963 RBMXL1Q96E39 390 aaKnown RBP12.62□□□□□ -0.39
CLN3-229ENST00000567963 DERL3Q96Q80 235 aa12.62□□□□□ -0.39
CLN3-229ENST00000567963 SELENOIQ9C0D9 397 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms