RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 Q9N2K0 584 aa17.73■□□□□ 0.43
SNX1-210ENST00000560260 A0A087X0M5 115 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 IGHV2-26A0A0B4J1V2 119 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 MDFIC2A0A1B0GVS7 189 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 A0A1B0GX30 115 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 F2RL2O00254 374 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 NPFFO15130 113 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 SSX5O60225 188 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 APOA1P02647 267 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 GSTP1P09211 210 aaKnown RBP17.72■□□□□ 0.43
SNX1-210ENST00000560260 NFYBP25208 207 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 GUCA2AQ02747 115 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 LDLRAD2Q5SZI1 272 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 HACD4Q5VWC8 232 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 MZT2AQ6P582 158 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 MOB1BQ7L9L4 216 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 PRR18Q8N4B5 295 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 MAFIPQ8WZ33 124 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 LEAP2Q969E1 77 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 AJUBAQ96IF1 538 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 CMTM3Q96MX0 182 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 SLC6A7Q99884 636 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 RIMS4Q9H426 269 aaPredicted RBP17.72■□□□□ 0.43
SNX1-210ENST00000560260 AUNIPQ9H7T9 357 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 DIABLOQ9NR28 239 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 SETD2Q9BYW2 2564 aaPredicted RBP17.72■□□□□ 0.43
SNX1-210ENST00000560260 IGHV3-43A0A0B4J1X8 118 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 CTDSP2O14595 271 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 XRCC3O43542 346 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 IGHV3-43DP0DP04 118 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 FPR2P25090 351 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 CD34P28906 385 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 LOXL3P58215 753 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 TAS2R20P59543 309 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 MADCAM1Q13477 382 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 ARFRP1Q13795 201 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 ZNF626Q68DY1 528 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 TRAT1Q6PIZ9 186 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 OR11H6Q8NGC7 330 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 C17orf50Q8WW18 174 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 S100A16Q96FQ6 103 aaKnown RBP17.72■□□□□ 0.43
SNX1-210ENST00000560260 MS4A7Q9GZW8 240 aaPredicted RBP17.72■□□□□ 0.43
SNX1-210ENST00000560260 NXF2Q9GZY0 626 aaKnown RBP17.72■□□□□ 0.43
SNX1-210ENST00000560260 ZNRD1Q9P1U0 126 aa17.72■□□□□ 0.43
SNX1-210ENST00000560260 ZNF230Q9UIE0 474 aaPredicted RBP17.72■□□□□ 0.43
SNX1-210ENST00000560260 A0A0U1RQK1 487 aa17.71■□□□□ 0.42
SNX1-210ENST00000560260 IGHV3-7P01780 117 aa17.71■□□□□ 0.42
SNX1-210ENST00000560260 SAA4P35542 130 aa17.71■□□□□ 0.42
SNX1-210ENST00000560260 HLA-DRB3P79483 266 aa17.71■□□□□ 0.42
SNX1-210ENST00000560260 GNMTQ14749 295 aa17.71■□□□□ 0.42
SNX1-210ENST00000560260 ARL6IP1Q15041 203 aa17.71■□□□□ 0.42
SNX1-210ENST00000560260 ZNF554Q86TJ5 538 aa17.71■□□□□ 0.42
SNX1-210ENST00000560260 LAX1Q8IWV1 398 aa17.71■□□□□ 0.42
SNX1-210ENST00000560260 OR10A7Q8NGE5 316 aa17.71■□□□□ 0.42
SNX1-210ENST00000560260 OR13D1Q8NGV5 346 aa17.71■□□□□ 0.42
SNX1-210ENST00000560260 GCDHQ92947 438 aaPredicted RBP17.71■□□□□ 0.42
SNX1-210ENST00000560260 PHF21AQ96BD5 680 aa17.71■□□□□ 0.42
SNX1-210ENST00000560260 CLEC7AQ9BXN2 247 aa17.71■□□□□ 0.42
SNX1-210ENST00000560260 GFOD1Q9NXC2 390 aa17.71■□□□□ 0.42
SNX1-210ENST00000560260 MELTFP08582 738 aa17.7■□□□□ 0.42
SNX1-210ENST00000560260 PNLIPRP3Q17RR3 467 aa17.7■□□□□ 0.42
SNX1-210ENST00000560260 TMEM69Q5SWH9 247 aa17.7■□□□□ 0.42
SNX1-210ENST00000560260 OR52W1Q6IF63 320 aa17.7■□□□□ 0.42
SNX1-210ENST00000560260 LHFPL4Q7Z7J7 247 aa17.7■□□□□ 0.42
SNX1-210ENST00000560260 ABHD12Q8N2K0 398 aa17.7■□□□□ 0.42
SNX1-210ENST00000560260 KCNIP1Q9NZI2 227 aa17.7■□□□□ 0.42
SNX1-210ENST00000560260 NDUFA13Q9P0J0 144 aa17.7■□□□□ 0.42
SNX1-210ENST00000560260 IGKV1D-8A0A087WSZ0 117 aa17.69■□□□□ 0.42
SNX1-210ENST00000560260 SDCBPO00560 298 aaPredicted RBP17.69■□□□□ 0.42
SNX1-210ENST00000560260 SPINT2O43291 252 aa17.69■□□□□ 0.42
SNX1-210ENST00000560260 IGLV1-47P01700 117 aa17.69■□□□□ 0.42
SNX1-210ENST00000560260 ARG1P05089 322 aa17.69■□□□□ 0.42
SNX1-210ENST00000560260 SCTP09683 121 aa17.69■□□□□ 0.42
SNX1-210ENST00000560260 PAX6P26367 422 aa17.69■□□□□ 0.42
SNX1-210ENST00000560260 GNG2P59768 71 aa17.69■□□□□ 0.42
SNX1-210ENST00000560260 BPIFB3P59826 476 aa17.69■□□□□ 0.42
SNX1-210ENST00000560260 MRPS15P82914 257 aaKnown RBP17.69■□□□□ 0.42
SNX1-210ENST00000560260 DEFB112Q30KQ8 113 aa17.69■□□□□ 0.42
SNX1-210ENST00000560260 OR52L2PQ8NGH6 319 aa17.69■□□□□ 0.42
SNX1-210ENST00000560260 OR10V1Q8NGI7 309 aa17.69■□□□□ 0.42
SNX1-210ENST00000560260 OR52M1Q8NGK5 317 aa17.69■□□□□ 0.42
SNX1-210ENST00000560260 OR4P4Q8NGL7 312 aa17.69■□□□□ 0.42
SNX1-210ENST00000560260 DGCR14Q96DF8 476 aaKnown RBP17.69■□□□□ 0.42
SNX1-210ENST00000560260 IGKV1-6A0A0C4DH72 117 aa17.68■□□□□ 0.42
SNX1-210ENST00000560260 MEIOCA2RUB1 952 aa17.68■□□□□ 0.42
SNX1-210ENST00000560260 A6NHS1 94 aa17.68■□□□□ 0.42
SNX1-210ENST00000560260 FAM25AB3EWG3 89 aa17.68■□□□□ 0.42
SNX1-210ENST00000560260 FAM25CB3EWG5 89 aa17.68■□□□□ 0.42
SNX1-210ENST00000560260 FAM25GB3EWG6 89 aa17.68■□□□□ 0.42
SNX1-210ENST00000560260 HLA-DQB1P01920 261 aa17.68■□□□□ 0.42
SNX1-210ENST00000560260 DTYMKP23919 212 aa17.68■□□□□ 0.42
SNX1-210ENST00000560260 GNG10P50151 68 aa17.68■□□□□ 0.42
SNX1-210ENST00000560260 HERPUD1Q15011 391 aa17.68■□□□□ 0.42
SNX1-210ENST00000560260 MIDNQ504T8 468 aa17.68■□□□□ 0.42
SNX1-210ENST00000560260 EXTL2Q9UBQ6 330 aa17.68■□□□□ 0.42
SNX1-210ENST00000560260 PSG11Q9UQ72 335 aa17.68■□□□□ 0.42
SNX1-210ENST00000560260 A0A1W2PPE3 182 aa17.67■□□□□ 0.42
SNX1-210ENST00000560260 POM121CA8CG34 1229 aa17.67■□□□□ 0.42
SNX1-210ENST00000560260 SLC31A2O15432 143 aa17.67■□□□□ 0.42
SNX1-210ENST00000560260 DYNAPQ8N1N2 210 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms