RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 GABARAPH6UMI1 98 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 IFNL4K9M1U5 179 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 SDCBPO00560 298 aaPredicted RBP4.29□□□□□ -1.72
SPG11-220ENST00000559933 BET1O15155 118 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 NDUFB3O43676 98 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 ORC5O43913 435 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 TMEM127O75204 238 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 UPK1BO75841 260 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 NAPSAO96009 420 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 CD3DP04234 171 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 LPLP06858 475 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 MELTFP08582 738 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 WNT2P09544 360 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 FAM90A15PP0C7V4 464 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 FAM90A13PP0C7W8 464 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 FAM90A14PP0C7W9 464 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 FAM90A24PP0C7X0 464 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 GSTT2P0CG29 244 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 GSTT2BP0CG30 244 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 PAX1P15863 534 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 LMO1P25800 156 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 GIFP27352 417 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 HRH1P35367 487 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 P2RX3P56373 397 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 HERPUD1Q15011 391 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 IGSF11Q5DX21 431 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 WDR25Q64LD2 544 aaPredicted RBP4.29□□□□□ -1.72
SPG11-220ENST00000559933 ZNF57Q68EA5 555 aaPredicted RBP4.29□□□□□ -1.72
SPG11-220ENST00000559933 ZNF782Q6ZMW2 699 aaPredicted RBP4.29□□□□□ -1.72
SPG11-220ENST00000559933 DNM1P46Q6ZS02 220 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 BTN2A1Q7KYR7 527 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 GDPD3Q7L5L3 318 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 PEG10Q86TG7 708 aaKnown RBP4.29□□□□□ -1.72
SPG11-220ENST00000559933 LDLRAD3Q86YD5 345 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 LYSMD2Q8IV50 215 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 FAM185AQ8N0U4 392 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 MUC20Q8N307 709 aaPredicted RBP4.29□□□□□ -1.72
SPG11-220ENST00000559933 OR8B3Q8NGG8 313 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 OR52L2PQ8NGH6 319 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 OR10V1Q8NGI7 309 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 OR56B4Q8NH76 319 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 S100ZQ8WXG8 99 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 NEIL1Q96FI4 390 aaPredicted RBP4.29□□□□□ -1.72
SPG11-220ENST00000559933 TIMD4Q96H15 378 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 SNX22Q96L94 193 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 CMTM3Q96MX0 182 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 OR8B2Q96RD0 313 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 NUDT16L1Q9BRJ7 211 aaKnown RBP4.29□□□□□ -1.72
SPG11-220ENST00000559933 THAP7Q9BT49 309 aaPredicted RBP4.29□□□□□ -1.72
SPG11-220ENST00000559933 TINAGL1Q9GZM7 467 aaPredicted RBP4.29□□□□□ -1.72
SPG11-220ENST00000559933 PATZ1Q9HBE1 687 aaKnown RBP4.29□□□□□ -1.72
SPG11-220ENST00000559933 RHOFQ9HBH0 211 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 MYOZ1Q9NP98 299 aaPredicted RBP4.29□□□□□ -1.72
SPG11-220ENST00000559933 IFT46Q9NQC8 304 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.29□□□□□ -1.72
SPG11-220ENST00000559933 MMP26Q9NRE1 261 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 PCDHB16Q9NRJ7 776 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 BEX4Q9NWD9 120 aaPredicted RBP4.29□□□□□ -1.72
SPG11-220ENST00000559933 GLS2Q9UI32 602 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 FBXO9Q9UK97 447 aaPredicted RBP4.29□□□□□ -1.72
SPG11-220ENST00000559933 TRAPPC2LQ9UL33 140 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 ANAPC10Q9UM13 185 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 ZANQ9Y493 2812 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 MED13LQ71F56 2210 aa4.29□□□□□ -1.72
SPG11-220ENST00000559933 KIAA2026Q5HYC2 2103 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 DSCAML1Q8TD84 2053 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 OTOGQ6ZRI0 2925 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 A0A0A6YYH2 397 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 A0A1W2PPE3 182 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 A0A1W2PRD5 423 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 A0A1W2PRF3 423 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 A0A1W2PRM7 423 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 A6NJ64 397 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 MGST3O14880 152 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 CTDSPLO15194 276 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 SLC31A2O15432 143 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 PLA2G10O15496 165 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 GSTZ1O43708 216 aaPredicted RBP4.28□□□□□ -1.72
SPG11-220ENST00000559933 SCGNO76038 276 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 BTCP35070 178 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 RCVRNP35243 200 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 PPP1CCP36873 323 aaKnown RBP4.28□□□□□ -1.72
SPG11-220ENST00000559933 RFX2P48378 723 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 PPP5CP53041 499 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 TMEM33P57088 247 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 GNB2P62879 340 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 RPL31P62899 125 aaKnown RBP4.28□□□□□ -1.72
SPG11-220ENST00000559933 HLA-DRB3P79483 266 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 MRPS15P82914 257 aaKnown RBP4.28□□□□□ -1.72
SPG11-220ENST00000559933 PITPNAQ00169 270 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 ZNF45Q02386 682 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 KLRD1Q13241 179 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 KLF9Q13886 244 aaPredicted RBP4.28□□□□□ -1.72
SPG11-220ENST00000559933 HMGN3Q15651 99 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 PNLIPRP3Q17RR3 467 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 C17orf58Q2M2W7 97 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 TMEM155Q4W5P6 130 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 LRRC10Q5BKY1 277 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 ATPAF1Q5TC12 328 aaPredicted RBP4.28□□□□□ -1.72
SPG11-220ENST00000559933 TRIQKQ629K1 86 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms