RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 HIST1H1BP16401 226 aaKnown RBP10.55□□□□□ -0.72
LDLR-205ENST00000557933 G0S2P27469 103 aa10.55□□□□□ -0.72
LDLR-205ENST00000557933 DDTP30046 118 aa10.55□□□□□ -0.72
LDLR-205ENST00000557933 GLIPR1P48060 266 aa10.55□□□□□ -0.72
LDLR-205ENST00000557933 EXT1Q16394 746 aa10.55□□□□□ -0.72
LDLR-205ENST00000557933 KCNMB1Q16558 191 aa10.55□□□□□ -0.72
LDLR-205ENST00000557933 FAM90A2PQ658T7 463 aa10.55□□□□□ -0.72
LDLR-205ENST00000557933 PMS2CLQ68D20 193 aa10.55□□□□□ -0.72
LDLR-205ENST00000557933 FIP1L1Q6UN15 594 aaKnown RBP10.55□□□□□ -0.72
LDLR-205ENST00000557933 LFNGQ8NES3 379 aa10.55□□□□□ -0.72
LDLR-205ENST00000557933 WNT5BQ9H1J7 359 aa10.55□□□□□ -0.72
LDLR-205ENST00000557933 PROK2Q9HC23 129 aa10.55□□□□□ -0.72
LDLR-205ENST00000557933 RNF150Q9ULK6 438 aa10.55□□□□□ -0.72
LDLR-205ENST00000557933 IGHV5-10-1A0A0J9YXX1 117 aa10.55□□□□□ -0.72
LDLR-205ENST00000557933 UBE2L5PA0A1B0GUS4 154 aa10.55□□□□□ -0.72
LDLR-205ENST00000557933 C5orf49A4QMS7 147 aa10.55□□□□□ -0.72
LDLR-205ENST00000557933 HNF1AP20823 631 aa10.55□□□□□ -0.72
LDLR-205ENST00000557933 DTYMKP23919 212 aa10.55□□□□□ -0.72
LDLR-205ENST00000557933 MSX1P28360 303 aa10.55□□□□□ -0.72
LDLR-205ENST00000557933 PLPPR1Q8TBJ4 325 aa10.55□□□□□ -0.72
LDLR-205ENST00000557933 GPR146Q96CH1 333 aa10.55□□□□□ -0.72
LDLR-205ENST00000557933 FOXB1Q99853 325 aa10.55□□□□□ -0.72
LDLR-205ENST00000557933 TMEM204Q9BSN7 226 aa10.55□□□□□ -0.72
LDLR-205ENST00000557933 TPRP12270 2363 aaKnown RBP10.55□□□□□ -0.72
LDLR-205ENST00000557933 YKT6O15498 198 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 PMELP40967 661 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 ECI1P42126 302 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 FAM27BQ5VT28 67 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 ZNF295-AS1Q8N0V1 137 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 TMEM54Q969K7 222 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 ANGPTL4Q9BY76 406 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 ZNF552Q9H707 407 aaPredicted RBP10.54□□□□□ -0.72
LDLR-205ENST00000557933 A0A0U1RQK1 487 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 ZNF816-ZNF321PA0A0X1KG74 233 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 ZNF503-AS2A6NEH8 195 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 TP53I11O14683 189 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 CYTIPO60759 359 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 SERPINE2P07093 398 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 CASP6P55212 293 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 C3AR1Q16581 482 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 SLC25A53Q5H9E4 307 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 CARFQ8N187 725 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 CHRNA10Q9GZZ6 450 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 MTCH1Q9NZJ7 389 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 hCG_38984A0A1B0GV85 526 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 SMCO3A2RU48 225 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 PGPEP1LA6NFU8 196 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 LIFP15018 202 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 CTSSP25774 331 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 CARD18P57730 90 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 COL10A1Q03692 680 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 C10orf128Q5T292 105 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 LHFPL2Q6ZUX7 228 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 C1orf87Q8N0U7 546 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 LILRB2Q8N423 598 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 SLC25A31Q9H0C2 315 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 TMEM38BQ9NVV0 291 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 PISDQ9UG56 409 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 WASF3Q9UPY6 502 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 ADGRG4Q8IZF6 3080 aa10.54□□□□□ -0.72
LDLR-205ENST00000557933 ZNF732B4DXR9 585 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 M0R296 226 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 GATCO43716 136 aaKnown RBP10.53□□□□□ -0.72
LDLR-205ENST00000557933 RAB35Q15286 201 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 NMSQ5H8A3 153 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 C1orf210Q8IVY1 113 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 LRTM2Q8N967 370 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 FADS6Q8N9I5 356 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 OR4X1Q8NH49 305 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 RCC1LQ96I51 464 aaKnown RBP10.53□□□□□ -0.72
LDLR-205ENST00000557933 OR2H1Q9GZK4 316 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 C11orf1Q9H5F2 150 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 MGAQ8IWI9 3026 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 CSMD1Q96PZ7 3565 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 LAMTOR5O43504 91 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 PGLYRP1O75594 196 aaPredicted RBP10.53□□□□□ -0.72
LDLR-205ENST00000557933 RHBDL1O75783 438 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 IFNA5P01569 189 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 IGKV1D-33P01593 117 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 IGKV1-33P01594 117 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 GZMHP20718 246 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 TLE4Q04727 773 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 ZFP36L1Q07352 338 aaKnown RBP10.53□□□□□ -0.72
LDLR-205ENST00000557933 RTL6Q6ICC9 239 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 C1QL4Q86Z23 238 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 TGIF2LXQ8IUE1 241 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 ATP5SQ99766 215 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 SMIM7Q9BQ49 75 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 PCGF1Q9BSM1 259 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 PRRG4Q9BZD6 226 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 ARFGEF3Q5TH69 2177 aa10.53□□□□□ -0.72
LDLR-205ENST00000557933 NCKAP5O14513 1909 aa10.52□□□□□ -0.72
LDLR-205ENST00000557933 LOC102723971A0A1B0GUV8 181 aa10.52□□□□□ -0.72
LDLR-205ENST00000557933 ETV2O00321 342 aaPredicted RBP10.52□□□□□ -0.72
LDLR-205ENST00000557933 TUSC2O75896 110 aa10.52□□□□□ -0.72
LDLR-205ENST00000557933 CDS2O95674 445 aa10.52□□□□□ -0.72
LDLR-205ENST00000557933 OTX2P32243 289 aa10.52□□□□□ -0.72
LDLR-205ENST00000557933 FAM3BP58499 235 aaPredicted RBP10.52□□□□□ -0.72
LDLR-205ENST00000557933 PRDX4Q13162 271 aa10.52□□□□□ -0.72
LDLR-205ENST00000557933 PCOLCEQ15113 449 aa10.52□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms