RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 CMSS1Q9BQ75 279 aaKnown RBP9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 HDHD3Q9BSH5 251 aaPredicted RBP9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 RIMS4Q9H426 269 aaPredicted RBP9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 PRDM13Q9H4Q3 707 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 ZMAT3Q9HA38 289 aaKnown RBP9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 ABRACLQ9P1F3 81 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 ZNRD1Q9P1U0 126 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 GNG12Q9UBI6 72 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 SCOCQ9UIL1 159 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 HILPDAQ9Y5L2 63 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 ETV7Q9Y603 341 aa9.3□□□□□ -0.92
CCDC88C-212ENST00000556767 A0A087X0M5 115 aa9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 A0A1B0GX30 115 aa9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 A0A1W2PPE3 182 aa9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 RAB27BO00194 218 aa9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 HBZP02008 142 aa9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 GNB3P16520 340 aa9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 CD34P28906 385 aa9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 IER3P46695 156 aa9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 RPL5P46777 297 aaKnown RBP9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 ACTG1P63261 375 aa9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 ARFRP1Q13795 201 aa9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 MINOS1Q5TGZ0 78 aa9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 OLFML2AQ68BL7 652 aa9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 SLC16A12Q6ZSM3 486 aa9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 CLVS1Q8IUQ0 354 aaPredicted RBP9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 OR10V1Q8NGI7 309 aa9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 MALSU1Q96EH3 234 aa9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 MDFIQ99750 246 aa9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 SSX3Q99909 188 aa9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 C19orf24Q9BVV8 132 aa9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 LINC00574Q9H8X3 128 aa9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 C12orf4Q9NQ89 552 aa9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 OR2S2Q9NQN1 319 aa9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 ABCB10Q9NRK6 738 aa9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 RHBDL2Q9NX52 303 aa9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 MINOS1-NBL1R4GNA1 71 aa9.29□□□□□ -0.92
CCDC88C-212ENST00000556767 LEUTXA8MZ59 168 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 H3BUX3 64 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 CLDN34H7C241 214 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 J3QR06 171 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 F2RL2O00254 374 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 SCGNO76038 276 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 GABARAPO95166 117 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 NAPSAO96009 420 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 CRYBA1P05813 215 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 RNASE1P07998 156 aaKnown RBP9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 HIST1H1DP16402 221 aaKnown RBP9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 TALDO1P37837 337 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 CEACAM3P40198 252 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 SCAND1P57086 179 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 ARL6IP1Q15041 203 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 LY6EQ16553 131 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 CTF1Q16619 201 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 LRRC75BQ2VPJ9 315 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 HLA-DRB5Q30154 266 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 FAM53AQ6NSI3 398 aaPredicted RBP9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 C16orf87Q6PH81 154 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 MOB1BQ7L9L4 216 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 C5orf24Q7Z6I8 188 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 DYNAPQ8N1N2 210 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 TMEM86BQ8N661 226 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 OR52M1Q8NGK5 317 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 OR4P4Q8NGL7 312 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 OR10X1Q8NGY0 326 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 FAM216AQ8WUB2 273 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 ZFAND2BQ8WV99 257 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 IL1F10Q8WWZ1 152 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 CREB3L1Q96BA8 519 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 GALMQ96C23 342 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 AJUBAQ96IF1 538 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 CHIAQ9BZP6 476 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 MMP28Q9H239 520 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 DCSTAMPQ9H295 470 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 MBNL3Q9NUK0 354 aaKnown RBP9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 GFOD1Q9NXC2 390 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 DPM3Q9P2X0 92 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 PSG11Q9UQ72 335 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 AMMECR1Q9Y4X0 333 aaPredicted RBP9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 POMT1Q9Y6A1 747 aa9.28□□□□□ -0.92
CCDC88C-212ENST00000556767 SERPINE3A8MV23 424 aa9.27□□□□□ -0.93
CCDC88C-212ENST00000556767 BUB1B-PAK6H3BSN5 160 aa9.27□□□□□ -0.93
CCDC88C-212ENST00000556767 MFNGO00587 321 aa9.27□□□□□ -0.93
CCDC88C-212ENST00000556767 NOL3O60936 208 aaKnown RBP9.27□□□□□ -0.93
CCDC88C-212ENST00000556767 TMEM127O75204 238 aa9.27□□□□□ -0.93
CCDC88C-212ENST00000556767 IGLV1-47P01700 117 aa9.27□□□□□ -0.93
CCDC88C-212ENST00000556767 RAB13P51153 203 aa9.27□□□□□ -0.93
CCDC88C-212ENST00000556767 LOXL3P58215 753 aa9.27□□□□□ -0.93
CCDC88C-212ENST00000556767 TMEM30BQ3MIR4 351 aa9.27□□□□□ -0.93
CCDC88C-212ENST00000556767 CDNFQ49AH0 187 aa9.27□□□□□ -0.93
CCDC88C-212ENST00000556767 LDLRAD2Q5SZI1 272 aa9.27□□□□□ -0.93
CCDC88C-212ENST00000556767 ZNF554Q86TJ5 538 aa9.27□□□□□ -0.93
CCDC88C-212ENST00000556767 IZUMO1Q8IYV9 350 aa9.27□□□□□ -0.93
CCDC88C-212ENST00000556767 OR52L2PQ8NGH6 319 aa9.27□□□□□ -0.93
CCDC88C-212ENST00000556767 OR5R1Q8NH85 324 aa9.27□□□□□ -0.93
CCDC88C-212ENST00000556767 GCDHQ92947 438 aaPredicted RBP9.27□□□□□ -0.93
CCDC88C-212ENST00000556767 SLC25A46Q96AG3 418 aa9.27□□□□□ -0.93
CCDC88C-212ENST00000556767 RPEQ96AT9 228 aa9.27□□□□□ -0.93
CCDC88C-212ENST00000556767 MEGF9Q9H1U4 602 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms