RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 TIMP3P35625 211 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 OR3A1P47881 315 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 MMP16P51512 607 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 RAP1BP61224 184 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 PAX5Q02548 391 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 PCK2Q16822 640 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 IQCJQ1A5X6 159 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 TMEM176BQ3YBM2 270 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-216ENST00000552909 GPR157Q5UAW9 335 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 LYPD6Q86Y78 171 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 OR13G1Q8NGZ3 307 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 MBD3L2Q8NHZ7 208 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-216ENST00000552909 TSPAN32Q96QS1 320 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 CALHM2Q9HA72 323 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 KIAA1456Q9P272 454 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 CLCF1Q9UBD9 225 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 ANAPC10Q9UM13 185 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 C14orf166Q9Y224 244 aaKnown RBP6.58□□□□□ -1.36
LIMA1-216ENST00000552909 B3GALT5Q9Y2C3 310 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 RHBDD3Q9Y3P4 386 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 FREM1Q5H8C1 2179 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 ABCA4P78363 2273 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 A0A0J9YW62 118 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 LOC107986453A0A1B0GWG9 222 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 C11orf98E9PRG8 122 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 CLDN34H7C241 214 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 TNFSF11O14788 317 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 OR6A2O95222 327 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 MT-ATP6P00846 226 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 KNG1P01042 644 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 HSPB1P04792 205 aaKnown RBP6.58□□□□□ -1.36
LIMA1-216ENST00000552909 GSTP1P09211 210 aaKnown RBP6.58□□□□□ -1.36
LIMA1-216ENST00000552909 VSIG8P0DPA2 414 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 ZNF17P17021 662 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 AMY2BP19961 511 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 FUT3P21217 361 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 OR3A2P47893 321 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 RND2P52198 227 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 RAC1P63000 192 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 CCL20P78556 96 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 HLA-DRB3P79483 266 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 QRFPP83859 136 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 ROM1Q03395 351 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 RPL18Q07020 188 aaKnown RBP6.58□□□□□ -1.36
LIMA1-216ENST00000552909 HERPUD1Q15011 391 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 SAPCD1Q5SSQ6 148 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 RIPPLY2Q5TAB7 128 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 AADACL3Q5VUY0 350 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 OTPQ5XKR4 325 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 SLC16A14Q7RTX9 510 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 MRPL52Q86TS9 123 aaKnown RBP6.58□□□□□ -1.36
LIMA1-216ENST00000552909 LHFPL1Q86WI0 220 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 CYB561D1Q8N8Q1 229 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 EMG1Q92979 244 aaKnown RBP6.58□□□□□ -1.36
LIMA1-216ENST00000552909 SYT3Q9BQG1 590 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 CDH20Q9HBT6 801 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 TMEM242Q9NWH2 141 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 WSB1Q9Y6I7 421 aa6.58□□□□□ -1.36
LIMA1-216ENST00000552909 PDZD2O15018 2839 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 PRR14LQ5THK1 2151 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 TRBV24-1A0A075B6N3 115 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 TMEM210A6NLX4 147 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 A6NNC1 897 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 OR4A8P0C604 315 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 PGA3P0DJD8 388 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 HSD11B1P28845 292 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 RPP30P78346 268 aaKnown RBP6.57□□□□□ -1.36
LIMA1-216ENST00000552909 MYBPHQ13203 477 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 ABLIM2Q6H8Q1 611 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 SLC25A26Q70HW3 274 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 RTN4RL2Q86UN3 420 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 ZNF573Q86YE8 665 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 SLC22A24Q8N4F4 322 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 OR4X1Q8NH49 305 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 OR10D3Q8NH80 312 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 ZNF385AQ96PM9 386 aaKnown RBP6.57□□□□□ -1.36
LIMA1-216ENST00000552909 UCN2Q96RP3 112 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 VAX2Q9UIW0 290 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 LRP12Q9Y561 859 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 A0A1W2PNR3 127 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 XKRY2A2RUG3 117 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 LIPT2A6NK58 231 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 PLPP3O14495 311 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 XKRYO14609 159 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 CXCL13O43927 109 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 CST2P09228 141 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 MMP7P09237 267 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-216ENST00000552909 ICAM4Q14773 271 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 SGCBQ16585 318 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 ARSJQ5FYB0 599 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-216ENST00000552909 COA6Q5JTJ3 125 aaKnown RBP6.57□□□□□ -1.36
LIMA1-216ENST00000552909 ZNF506Q5JVG8 444 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 DMRTA1Q5VZB9 504 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 ZNF774Q6NX45 483 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 TEX38Q6PEX7 206 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 SPSB3Q6PJ21 355 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 H1FNTQ75WM6 255 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-216ENST00000552909 OR10A7Q8NGE5 316 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 TMEM18Q96B42 140 aa6.57□□□□□ -1.36
LIMA1-216ENST00000552909 FGGYQ96C11 551 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms