RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 SUMF2Q8NBJ7 301 aa12.08□□□□□ -0.48
VPS33A-209ENST00000544349 MSI2Q96DH6 328 aaKnown RBP12.08□□□□□ -0.48
VPS33A-209ENST00000544349 C18orf12Q96KH6 178 aa12.08□□□□□ -0.48
VPS33A-209ENST00000544349 SYT3Q9BQG1 590 aa12.08□□□□□ -0.48
VPS33A-209ENST00000544349 HRH4Q9H3N8 390 aa12.08□□□□□ -0.48
VPS33A-209ENST00000544349 IFT22Q9H7X7 185 aa12.08□□□□□ -0.48
VPS33A-209ENST00000544349 MMP26Q9NRE1 261 aa12.08□□□□□ -0.48
VPS33A-209ENST00000544349 HSPB6O14558 160 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 IFNA21P01568 189 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 ASCL1P50553 236 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 TMEM33P57088 247 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 MZT1Q08AG7 82 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 Q6P435 159 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 LIAT1Q6ZQX7 453 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 ZNF826PQ6ZT77 177 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 NUP37Q8NFH4 326 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 OR52M1Q8NGK5 317 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 GLYATL2Q8WU03 294 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 SMIM8Q96KF7 97 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 TP53RKQ96S44 253 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 TSNAXQ99598 290 aaKnown RBP12.07□□□□□ -0.48
VPS33A-209ENST00000544349 TRAV24A0A0B4J272 114 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 HS3ST1O14792 307 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 FBXO24O75426 580 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 MED6O75586 246 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 NXPH2O95156 264 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 NAPSAO96009 420 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 PPYP01298 95 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 GLAP06280 429 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 PCSK4Q6UW60 755 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 OR2Z1Q8NG97 314 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 OR5T2Q8NGG2 359 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 NEK7Q8TDX7 302 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 GTF3AQ92664 365 aaKnown RBP12.07□□□□□ -0.48
VPS33A-209ENST00000544349 WFIKKN1Q96NZ8 548 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 RSRP1Q9BUV0 290 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 HES4Q9HCC6 221 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 POLEQ07864 2286 aa12.07□□□□□ -0.48
VPS33A-209ENST00000544349 A6NLC8 198 aa12.06□□□□□ -0.48
VPS33A-209ENST00000544349 H7C1Q1 480 aa12.06□□□□□ -0.48
VPS33A-209ENST00000544349 DEGS1O15121 323 aa12.06□□□□□ -0.48
VPS33A-209ENST00000544349 PHF1O43189 567 aaPredicted RBP12.06□□□□□ -0.48
VPS33A-209ENST00000544349 MUC1P15941 1255 aaPredicted RBP12.06□□□□□ -0.48
VPS33A-209ENST00000544349 CD200P41217 278 aa12.06□□□□□ -0.48
VPS33A-209ENST00000544349 GLP1RP43220 463 aa12.06□□□□□ -0.48
VPS33A-209ENST00000544349 SMCO1Q147U7 214 aa12.06□□□□□ -0.48
VPS33A-209ENST00000544349 ZNF146Q15072 292 aa12.06□□□□□ -0.48
VPS33A-209ENST00000544349 WDR82Q6UXN9 313 aa12.06□□□□□ -0.48
VPS33A-209ENST00000544349 LRTM2Q8N967 370 aa12.06□□□□□ -0.48
VPS33A-209ENST00000544349 RDH5Q92781 318 aa12.06□□□□□ -0.48
VPS33A-209ENST00000544349 GPHA2Q96T91 129 aa12.06□□□□□ -0.48
VPS33A-209ENST00000544349 MRPL37Q9BZE1 423 aaKnown RBP12.06□□□□□ -0.48
VPS33A-209ENST00000544349 UFSP2Q9NUQ7 469 aa12.06□□□□□ -0.48
VPS33A-209ENST00000544349 ATXN7O15265 892 aaPredicted RBP12.05□□□□□ -0.48
VPS33A-209ENST00000544349 ZNF44P15621 663 aa12.05□□□□□ -0.48
VPS33A-209ENST00000544349 CHRNB4P30926 498 aa12.05□□□□□ -0.48
VPS33A-209ENST00000544349 HERV-K104P61576 105 aa12.05□□□□□ -0.48
VPS33A-209ENST00000544349 BSPH1Q075Z2 132 aa12.05□□□□□ -0.48
VPS33A-209ENST00000544349 PJVKQ0ZLH3 352 aa12.05□□□□□ -0.48
VPS33A-209ENST00000544349 HERPUD1Q15011 391 aa12.05□□□□□ -0.48
VPS33A-209ENST00000544349 SRSF7Q16629 238 aaKnown RBP eCLIP12.05□□□□□ -0.48
VPS33A-209ENST00000544349 MEX3BQ6ZN04 569 aaKnown RBP12.05□□□□□ -0.48
VPS33A-209ENST00000544349 LDLRAD3Q86YD5 345 aa12.05□□□□□ -0.48
VPS33A-209ENST00000544349 SLC35G3Q8N808 338 aa12.05□□□□□ -0.48
VPS33A-209ENST00000544349 SUCNR1Q9BXA5 334 aa12.05□□□□□ -0.48
VPS33A-209ENST00000544349 WFDC1Q9HC57 220 aa12.05□□□□□ -0.48
VPS33A-209ENST00000544349 TAAR3PQ9P1P4 343 aa12.05□□□□□ -0.48
VPS33A-209ENST00000544349 KCNIP3Q9Y2W7 256 aa12.05□□□□□ -0.48
VPS33A-209ENST00000544349 TAAR5O14804 337 aa12.05□□□□□ -0.48
VPS33A-209ENST00000544349 PTBP3O95758 552 aaKnown RBP12.05□□□□□ -0.48
VPS33A-209ENST00000544349 OR2H2O95918 312 aa12.05□□□□□ -0.48
VPS33A-209ENST00000544349 SELENOVP59797 346 aa12.05□□□□□ -0.48
VPS33A-209ENST00000544349 SPIN3Q5JUX0 258 aa12.05□□□□□ -0.48
VPS33A-209ENST00000544349 C10orf91Q5T1B1 145 aa12.05□□□□□ -0.48
VPS33A-209ENST00000544349 TMEM88Q6PEY1 159 aa12.05□□□□□ -0.48
VPS33A-209ENST00000544349 IL34Q6ZMJ4 242 aa12.05□□□□□ -0.48
VPS33A-209ENST00000544349 Q6ZS49 121 aa12.05□□□□□ -0.48
VPS33A-209ENST00000544349 PARP12Q9H0J9 701 aaKnown RBP12.05□□□□□ -0.48
VPS33A-209ENST00000544349 RIMS4Q9H426 269 aaPredicted RBP12.05□□□□□ -0.48
VPS33A-209ENST00000544349 Q9N2K0 584 aa12.05□□□□□ -0.48
VPS33A-209ENST00000544349 TREM1Q9NP99 234 aa12.05□□□□□ -0.48
VPS33A-209ENST00000544349 CHD3Q12873 2000 aaKnown RBP12.05□□□□□ -0.48
VPS33A-209ENST00000544349 F8W036 122 aa12.04□□□□□ -0.48
VPS33A-209ENST00000544349 TOR1AO14656 332 aa12.04□□□□□ -0.48
VPS33A-209ENST00000544349 SH2D1BO14796 132 aa12.04□□□□□ -0.48
VPS33A-209ENST00000544349 SCTP09683 121 aa12.04□□□□□ -0.48
VPS33A-209ENST00000544349 SULT1A2P50226 295 aa12.04□□□□□ -0.48
VPS33A-209ENST00000544349 UCP3P55916 312 aa12.04□□□□□ -0.48
VPS33A-209ENST00000544349 BLOC1S1P78537 153 aa12.04□□□□□ -0.48
VPS33A-209ENST00000544349 ADORA2A-AS1P86434 159 aa12.04□□□□□ -0.48
VPS33A-209ENST00000544349 FBXL19-AS1Q494R0 122 aa12.04□□□□□ -0.48
VPS33A-209ENST00000544349 FIP1L1Q6UN15 594 aaKnown RBP12.04□□□□□ -0.48
VPS33A-209ENST00000544349 NGBQ9NPG2 151 aa12.04□□□□□ -0.48
VPS33A-209ENST00000544349 CARHSP1Q9Y2V2 147 aaKnown RBP12.04□□□□□ -0.48
VPS33A-209ENST00000544349 IGKV1D-13A0A0B4J2D9 117 aa12.04□□□□□ -0.48
VPS33A-209ENST00000544349 IGKV1-6A0A0C4DH72 117 aa12.04□□□□□ -0.48
VPS33A-209ENST00000544349 SIRPB1O00241 398 aa12.04□□□□□ -0.48
VPS33A-209ENST00000544349 SLC33A1O00400 549 aaPredicted RBP12.04□□□□□ -0.48
VPS33A-209ENST00000544349 WNT9BO14905 357 aa12.04□□□□□ -0.48
VPS33A-209ENST00000544349 AGPAT2O15120 278 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms