RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 SLC31A2O15432 143 aa10.57□□□□□ -0.72
SS18-204ENST00000539244 CDRT1O95170 752 aa10.57□□□□□ -0.72
SS18-204ENST00000539244 FADS2O95864 444 aaKnown RBP10.57□□□□□ -0.72
SS18-204ENST00000539244 MT-ND4P03905 459 aa10.57□□□□□ -0.72
SS18-204ENST00000539244 OR8U8P0C7N1 319 aa10.57□□□□□ -0.72
SS18-204ENST00000539244 PPIFP30405 207 aaKnown RBP10.57□□□□□ -0.72
SS18-204ENST00000539244 RASSF2P50749 326 aa10.57□□□□□ -0.72
SS18-204ENST00000539244 GBX2P52951 348 aaPredicted RBP10.57□□□□□ -0.72
SS18-204ENST00000539244 F2RL1P55085 397 aa10.57□□□□□ -0.72
SS18-204ENST00000539244 RAB40BQ12829 278 aa10.57□□□□□ -0.72
SS18-204ENST00000539244 ASPHD1Q5U4P2 390 aa10.57□□□□□ -0.72
SS18-204ENST00000539244 FAM53AQ6NSI3 398 aaPredicted RBP10.57□□□□□ -0.72
SS18-204ENST00000539244 ZNF497Q6ZNH5 498 aa10.57□□□□□ -0.72
SS18-204ENST00000539244 MRPS18AQ9NVS2 196 aaKnown RBP10.57□□□□□ -0.72
SS18-204ENST00000539244 PAK1IP1Q9NWT1 392 aaPredicted RBP10.57□□□□□ -0.72
SS18-204ENST00000539244 AASSQ9UDR5 926 aa10.57□□□□□ -0.72
SS18-204ENST00000539244 ORC6Q9Y5N6 252 aa10.57□□□□□ -0.72
SS18-204ENST00000539244 IGHV3-43A0A0B4J1X8 118 aa10.56□□□□□ -0.72
SS18-204ENST00000539244 EI24O14681 340 aa10.56□□□□□ -0.72
SS18-204ENST00000539244 ZNF780AO75290 641 aaPredicted RBP10.56□□□□□ -0.72
SS18-204ENST00000539244 CSTBP04080 98 aaKnown RBP10.56□□□□□ -0.72
SS18-204ENST00000539244 CD2P06729 351 aa10.56□□□□□ -0.72
SS18-204ENST00000539244 IGHV3-43DP0DP04 118 aa10.56□□□□□ -0.72
SS18-204ENST00000539244 ZNF93P35789 620 aaPredicted RBP10.56□□□□□ -0.72
SS18-204ENST00000539244 SOX2P48431 317 aa10.56□□□□□ -0.72
SS18-204ENST00000539244 ALDH3A2P51648 485 aa10.56□□□□□ -0.72
SS18-204ENST00000539244 STEAP3Q658P3 488 aa10.56□□□□□ -0.72
SS18-204ENST00000539244 GAPTQ8N292 157 aa10.56□□□□□ -0.72
SS18-204ENST00000539244 ZNF491Q8N8L2 437 aa10.56□□□□□ -0.72
SS18-204ENST00000539244 UBALD1Q8TB05 177 aa10.56□□□□□ -0.72
SS18-204ENST00000539244 GPR148Q8TDV2 347 aa10.56□□□□□ -0.72
SS18-204ENST00000539244 RAB9BQ9NP90 201 aa10.56□□□□□ -0.72
SS18-204ENST00000539244 TMEM138Q9NPI0 162 aa10.56□□□□□ -0.72
SS18-204ENST00000539244 CHCHD3Q9NX63 227 aaKnown RBP10.56□□□□□ -0.72
SS18-204ENST00000539244 RCC2Q9P258 522 aaKnown RBP10.56□□□□□ -0.72
SS18-204ENST00000539244 C12orf77C9JDV5 145 aa10.55□□□□□ -0.72
SS18-204ENST00000539244 AIPO00170 330 aa10.55□□□□□ -0.72
SS18-204ENST00000539244 IGLV1-40P01703 118 aa10.55□□□□□ -0.72
SS18-204ENST00000539244 SERPINA2P20848 420 aa10.55□□□□□ -0.72
SS18-204ENST00000539244 GTF2A1P52655 376 aaPredicted RBP10.55□□□□□ -0.72
SS18-204ENST00000539244 ZNF134P52741 427 aa10.55□□□□□ -0.72
SS18-204ENST00000539244 ZNF616Q08AN1 781 aa10.55□□□□□ -0.72
SS18-204ENST00000539244 LSAMPQ13449 338 aa10.55□□□□□ -0.72
SS18-204ENST00000539244 ZIK1Q3SY52 487 aaPredicted RBP10.55□□□□□ -0.72
SS18-204ENST00000539244 CCDC58Q4VC31 144 aa10.55□□□□□ -0.72
SS18-204ENST00000539244 CT45A1Q5HYN5 189 aa10.55□□□□□ -0.72
SS18-204ENST00000539244 ATAD3CQ5T2N8 411 aa10.55□□□□□ -0.72
SS18-204ENST00000539244 DDI2Q5TDH0 399 aa10.55□□□□□ -0.72
SS18-204ENST00000539244 ZNF429Q86V71 674 aa10.55□□□□□ -0.72
SS18-204ENST00000539244 CT45A3Q8NHU0 189 aa10.55□□□□□ -0.72
SS18-204ENST00000539244 RHOXF1Q8NHV9 184 aa10.55□□□□□ -0.72
SS18-204ENST00000539244 CCDC107Q8WV48 283 aa10.55□□□□□ -0.72
SS18-204ENST00000539244 TMEM106AQ96A25 262 aa10.55□□□□□ -0.72
SS18-204ENST00000539244 Q96MT0 163 aa10.55□□□□□ -0.72
SS18-204ENST00000539244 KLK15Q9H2R5 256 aa10.55□□□□□ -0.72
SS18-204ENST00000539244 GNB4Q9HAV0 340 aa10.55□□□□□ -0.72
SS18-204ENST00000539244 ZNF107Q9UII5 783 aaPredicted RBP10.55□□□□□ -0.72
SS18-204ENST00000539244 ING4Q9UNL4 249 aa10.55□□□□□ -0.72
SS18-204ENST00000539244 VSIG4Q9Y279 399 aa10.55□□□□□ -0.72
SS18-204ENST00000539244 GMPPBQ9Y5P6 360 aa10.55□□□□□ -0.72
SS18-204ENST00000539244 TENM2Q9NT68 2774 aa10.55□□□□□ -0.72
SS18-204ENST00000539244 FAM90A10PA6NDY2 464 aa10.54□□□□□ -0.72
SS18-204ENST00000539244 SPINT2O43291 252 aa10.54□□□□□ -0.72
SS18-204ENST00000539244 LANCL1O43813 399 aa10.54□□□□□ -0.72
SS18-204ENST00000539244 HLA-DRB1P01911 266 aa10.54□□□□□ -0.72
SS18-204ENST00000539244 LIMS3P0CW19 117 aa10.54□□□□□ -0.72
SS18-204ENST00000539244 LIMS4P0CW20 117 aa10.54□□□□□ -0.72
SS18-204ENST00000539244 GTF2F2P13984 249 aa10.54□□□□□ -0.72
SS18-204ENST00000539244 BDKRB2P30411 391 aa10.54□□□□□ -0.72
SS18-204ENST00000539244 PPP3R1P63098 170 aa10.54□□□□□ -0.72
SS18-204ENST00000539244 FAM27D1Q5T7N8 215 aa10.54□□□□□ -0.72
SS18-204ENST00000539244 RPL22L1Q6P5R6 122 aaKnown RBP10.54□□□□□ -0.72
SS18-204ENST00000539244 SBSPONQ8IVN8 264 aa10.54□□□□□ -0.72
SS18-204ENST00000539244 STX19Q8N4C7 294 aa10.54□□□□□ -0.72
SS18-204ENST00000539244 OR52I1Q8NGK6 324 aa10.54□□□□□ -0.72
SS18-204ENST00000539244 OR1N2Q8NGR9 330 aa10.54□□□□□ -0.72
SS18-204ENST00000539244 NEK7Q8TDX7 302 aa10.54□□□□□ -0.72
SS18-204ENST00000539244 RCHY1Q96PM5 261 aa10.54□□□□□ -0.72
SS18-204ENST00000539244 S100A13Q99584 98 aa10.54□□□□□ -0.72
SS18-204ENST00000539244 SPACA1Q9HBV2 294 aa10.54□□□□□ -0.72
SS18-204ENST00000539244 AMBNQ9NP70 447 aa10.54□□□□□ -0.72
SS18-204ENST00000539244 RYR2Q92736 4967 aa10.54□□□□□ -0.72
SS18-204ENST00000539244 LYSTQ99698 3801 aa10.53□□□□□ -0.72
SS18-204ENST00000539244 DNAH1Q9P2D7 4330 aa10.53□□□□□ -0.72
SS18-204ENST00000539244 A0A1W2PP11 408 aa10.53□□□□□ -0.72
SS18-204ENST00000539244 ATP5HO75947 161 aa10.53□□□□□ -0.72
SS18-204ENST00000539244 LY86O95711 162 aa10.53□□□□□ -0.72
SS18-204ENST00000539244 SLC2A2P11168 524 aaPredicted RBP10.53□□□□□ -0.72
SS18-204ENST00000539244 GNB1P62873 340 aa10.53□□□□□ -0.72
SS18-204ENST00000539244 MMDQ15546 238 aa10.53□□□□□ -0.72
SS18-204ENST00000539244 C6orf183Q5T699 404 aa10.53□□□□□ -0.72
SS18-204ENST00000539244 SYT6Q5T7P8 510 aaPredicted RBP10.53□□□□□ -0.72
SS18-204ENST00000539244 XAF1Q6GPH4 301 aa10.53□□□□□ -0.72
SS18-204ENST00000539244 TMEM65Q6PI78 240 aa10.53□□□□□ -0.72
SS18-204ENST00000539244 TRAT1Q6PIZ9 186 aa10.53□□□□□ -0.72
SS18-204ENST00000539244 PYDC1Q8WXC3 89 aa10.53□□□□□ -0.72
SS18-204ENST00000539244 RBMXL1Q96E39 390 aaKnown RBP10.53□□□□□ -0.72
SS18-204ENST00000539244 MRPS24Q96EL2 167 aaKnown RBP10.53□□□□□ -0.72
SS18-204ENST00000539244 OR51J1Q9H342 316 aa10.53□□□□□ -0.72
SS18-204ENST00000539244 ISYNA1Q9NPH2 558 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms