RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 HSD17B11Q8NBQ5 300 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 SLC26A10Q8NG04 563 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 TMEM54Q969K7 222 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 WDR34Q96EX3 536 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 DUS3LQ96G46 650 aaKnown RBP2.49□□□□□ -2.01
CD44-235ENST00000532339 OR4K3Q96R72 315 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 NRIP2Q9BQI9 281 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 DAZ3Q9NR90 486 aaKnown RBP2.49□□□□□ -2.01
CD44-235ENST00000532339 TMEM106BQ9NUM4 274 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 RMND1Q9NWS8 449 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 CLN8Q9UBY8 286 aa2.49□□□□□ -2.01
CD44-235ENST00000532339 NCF1BA6NI72 391 aaPredicted RBP2.48□□□□□ -2.01
CD44-235ENST00000532339 NCF1CA8MVU1 366 aaPredicted RBP2.48□□□□□ -2.01
CD44-235ENST00000532339 PHYHO14832 338 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 CASQ2O14958 399 aaPredicted RBP2.48□□□□□ -2.01
CD44-235ENST00000532339 NPFFO15130 113 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 MRPS12O15235 138 aaKnown RBP2.48□□□□□ -2.01
CD44-235ENST00000532339 EIF3GO75821 320 aaKnown RBP eCLIP2.48□□□□□ -2.01
CD44-235ENST00000532339 MPC1LP0DKB6 136 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 ZNF35P13682 527 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 UCHL3P15374 230 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 SPNP16150 400 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 DCKP27707 260 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 RRM2P31350 389 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 CTRLP40313 264 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 AQP2P41181 271 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 UGT2B15P54855 530 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 FGF8P55075 233 aaPredicted RBP2.48□□□□□ -2.01
CD44-235ENST00000532339 KLF3P57682 345 aaPredicted RBP2.48□□□□□ -2.01
CD44-235ENST00000532339 ADARB1P78563 741 aaKnown RBP2.48□□□□□ -2.01
CD44-235ENST00000532339 LIPEQ05469 1076 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 REG3AQ06141 175 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 IL18Q14116 193 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 LRRC75BQ2VPJ9 315 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 TRMT5Q32P41 509 aaKnown RBP2.48□□□□□ -2.01
CD44-235ENST00000532339 LGALS9BQ3B8N2 356 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 TTLL9Q3SXZ7 439 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 PAGE3Q5JUK9 113 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 C22orf42Q6IC83 251 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 ANKRD26P1Q6NSI1 321 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 PPP1R2P3Q6NXS1 205 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 TMEM53Q6P2H8 277 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 CASP12Q6UXS9 341 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 NPSR1Q6W5P4 371 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 ACP7Q6ZNF0 438 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 THOC6Q86W42 341 aaKnown RBP2.48□□□□□ -2.01
CD44-235ENST00000532339 ZNF567Q8N184 647 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 FAM71E2Q8N5Q1 922 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 ZNF283Q8N7M2 679 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 SUMF2Q8NBJ7 301 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 BPIFCQ8NFQ6 507 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 OR8B3Q8NGG8 313 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 OR4A4PQ8NGN8 299 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 C10orf82Q8WW14 230 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 SGK3Q96BR1 496 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 LRRC45Q96CN5 670 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 RNF157Q96PX1 679 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 OR8B2Q96RD0 313 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 SIRT7Q9NRC8 400 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 PTTG3PQ9NZH4 202 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 PSME2Q9UL46 239 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 TBC1D24Q9ULP9 559 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 ING4Q9UNL4 249 aa2.48□□□□□ -2.01
CD44-235ENST00000532339 IGLV1-36A0A0B4J1U3 117 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 TRBV9A0A0B4J1U6 114 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 A0A1B0GVI7 797 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 TEX46H3BTG2 121 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 SIRPB1O00241 398 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 DYNC1I1O14576 645 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 AIM2O14862 343 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 SLC31A2O15432 143 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 TTC4O95801 387 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 IGHV1-46P01743 117 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 GKN3PP0CG01 181 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 GZMAP12544 262 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 ZNF250P15622 560 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 ELK1P19419 428 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 STOMP27105 288 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 PPP1R2P41236 205 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 CRATP43155 626 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 RPS5P46782 204 aaKnown RBP2.47□□□□□ -2.01
CD44-235ENST00000532339 RORCP51449 518 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 IRF8Q02556 426 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 PRPSAP1Q14558 356 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 POU6F1Q14863 301 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 HADHQ16836 314 aaKnown RBP2.47□□□□□ -2.01
CD44-235ENST00000532339 ARHGAP11BQ3KRB8 267 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 LCN12Q6JVE5 192 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 REEP3Q6NUK4 255 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 OR2W3Q7Z3T1 314 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 MARCH3Q86UD3 253 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 ZNF429Q86V71 674 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 KATNAL2Q8IYT4 538 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 COMMD1Q8N668 190 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 PRELID2Q8N945 189 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 RHEBL1Q8TAI7 183 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 SYNPRQ8TBG9 265 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 PEX13Q92968 403 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 LRRC39Q96DD0 335 aa2.47□□□□□ -2.01
CD44-235ENST00000532339 SLC35E1Q96K37 410 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms