RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 SPIN3Q5JUX0 258 aa15.82■□□□□ 0.12
VPS28-207ENST00000526977 ZCCHC24Q8N2G6 241 aaKnown RBP15.82■□□□□ 0.12
VPS28-207ENST00000526977 CLEC18CQ8NCF0 446 aa15.82■□□□□ 0.12
VPS28-207ENST00000526977 OR11L1Q8NGX0 322 aa15.82■□□□□ 0.12
VPS28-207ENST00000526977 THAP6Q8TBB0 222 aa15.82■□□□□ 0.12
VPS28-207ENST00000526977 LRRC29Q8WV35 223 aa15.82■□□□□ 0.12
VPS28-207ENST00000526977 GALNT14Q96FL9 552 aa15.82■□□□□ 0.12
VPS28-207ENST00000526977 C2orf50Q96LR7 162 aa15.82■□□□□ 0.12
VPS28-207ENST00000526977 RNF126Q9BV68 326 aa15.82■□□□□ 0.12
VPS28-207ENST00000526977 SAP30LQ9HAJ7 183 aa15.82■□□□□ 0.12
VPS28-207ENST00000526977 PPP1R3CQ9UQK1 317 aa15.82■□□□□ 0.12
VPS28-207ENST00000526977 RPS10-NUDT3A0A1W2PQS6 291 aa15.82■□□□□ 0.12
VPS28-207ENST00000526977 WNT9BO14905 357 aa15.82■□□□□ 0.12
VPS28-207ENST00000526977 TUSC2O75896 110 aa15.82■□□□□ 0.12
VPS28-207ENST00000526977 DIRAS3O95661 229 aa15.82■□□□□ 0.12
VPS28-207ENST00000526977 GNRHRP30968 328 aa15.82■□□□□ 0.12
VPS28-207ENST00000526977 KCNJ3P48549 501 aa15.82■□□□□ 0.12
VPS28-207ENST00000526977 PPOXP50336 477 aa15.82■□□□□ 0.12
VPS28-207ENST00000526977 IL15RAQ13261 267 aa15.82■□□□□ 0.12
VPS28-207ENST00000526977 SHEQ5VZ18 495 aa15.82■□□□□ 0.12
VPS28-207ENST00000526977 PLPPR1Q8TBJ4 325 aa15.82■□□□□ 0.12
VPS28-207ENST00000526977 A0A0D9SG52 128 aa15.81■□□□□ 0.12
VPS28-207ENST00000526977 SRRM5B3KS81 715 aa15.81■□□□□ 0.12
VPS28-207ENST00000526977 MDH2P40926 338 aaKnown RBP15.81■□□□□ 0.12
VPS28-207ENST00000526977 HOXA4Q00056 320 aaPredicted RBP15.81■□□□□ 0.12
VPS28-207ENST00000526977 TMEM187Q14656 261 aa15.81■□□□□ 0.12
VPS28-207ENST00000526977 ATXN7L3Q14CW9 347 aaPredicted RBP15.81■□□□□ 0.12
VPS28-207ENST00000526977 ZNF497Q6ZNH5 498 aa15.81■□□□□ 0.12
VPS28-207ENST00000526977 KCNRGQ8N5I3 272 aa15.81■□□□□ 0.12
VPS28-207ENST00000526977 MBD2Q9UBB5 411 aa15.81■□□□□ 0.12
VPS28-207ENST00000526977 RNF7Q9UBF6 113 aa15.81■□□□□ 0.12
VPS28-207ENST00000526977 GLS2Q9UI32 602 aa15.81■□□□□ 0.12
VPS28-207ENST00000526977 LINC00862A6NCI5 91 aa15.8■□□□□ 0.12
VPS28-207ENST00000526977 POM121CA8CG34 1229 aa15.8■□□□□ 0.12
VPS28-207ENST00000526977 RP2O75695 350 aa15.8■□□□□ 0.12
VPS28-207ENST00000526977 LHBP01229 141 aa15.8■□□□□ 0.12
VPS28-207ENST00000526977 OR5AC1P0C628 307 aa15.8■□□□□ 0.12
VPS28-207ENST00000526977 DANCRP0C864 163 aa15.8■□□□□ 0.12
VPS28-207ENST00000526977 SMIM21Q3B7S5 101 aa15.8■□□□□ 0.12
VPS28-207ENST00000526977 ACP7Q6ZNF0 438 aa15.8■□□□□ 0.12
VPS28-207ENST00000526977 DTX2Q86UW9 622 aa15.8■□□□□ 0.12
VPS28-207ENST00000526977 FAM90A1Q86YD7 464 aa15.8■□□□□ 0.12
VPS28-207ENST00000526977 GAPTQ8N292 157 aa15.8■□□□□ 0.12
VPS28-207ENST00000526977 OR4A4PQ8NGN8 299 aa15.8■□□□□ 0.12
VPS28-207ENST00000526977 A0A1W2PPR1 153 aa15.8■□□□□ 0.12
VPS28-207ENST00000526977 RNF222A6NCQ9 220 aa15.8■□□□□ 0.12
VPS28-207ENST00000526977 LRRC30A6NM36 301 aa15.8■□□□□ 0.12
VPS28-207ENST00000526977 H0YIZ8 118 aa15.8■□□□□ 0.12
VPS28-207ENST00000526977 OR2F2O95006 317 aa15.8■□□□□ 0.12
VPS28-207ENST00000526977 HAND1O96004 215 aa15.8■□□□□ 0.12
VPS28-207ENST00000526977 IRF2P14316 349 aa15.8■□□□□ 0.12
VPS28-207ENST00000526977 OR2F1Q13607 317 aa15.8■□□□□ 0.12
VPS28-207ENST00000526977 CLLU1Q5K131 121 aa15.8■□□□□ 0.12
VPS28-207ENST00000526977 ACOT7LQ6ZUV0 252 aa15.8■□□□□ 0.12
VPS28-207ENST00000526977 OR14J1Q9UGF5 321 aa15.8■□□□□ 0.12
VPS28-207ENST00000526977 PCDHB10Q9UN67 800 aa15.8■□□□□ 0.12
VPS28-207ENST00000526977 TRBV6-7A0A0A0MS04 114 aa15.79■□□□□ 0.12
VPS28-207ENST00000526977 TRAV39A0A0B4J263 110 aa15.79■□□□□ 0.12
VPS28-207ENST00000526977 H7C1Q1 480 aa15.79■□□□□ 0.12
VPS28-207ENST00000526977 LMO1P25800 156 aa15.79■□□□□ 0.12
VPS28-207ENST00000526977 CEBPDP49716 269 aaPredicted RBP15.79■□□□□ 0.12
VPS28-207ENST00000526977 HLA-DRB3P79483 266 aa15.79■□□□□ 0.12
VPS28-207ENST00000526977 ZNF345Q14585 488 aa15.79■□□□□ 0.12
VPS28-207ENST00000526977 GCSAMQ8N6F7 178 aa15.79■□□□□ 0.12
VPS28-207ENST00000526977 GLYATL2Q8WU03 294 aa15.79■□□□□ 0.12
VPS28-207ENST00000526977 SUCNR1Q9BXA5 334 aa15.79■□□□□ 0.12
VPS28-207ENST00000526977 GSKIPQ9P0R6 139 aa15.79■□□□□ 0.12
VPS28-207ENST00000526977 IGKV1D-13A0A0B4J2D9 117 aa15.78■□□□□ 0.12
VPS28-207ENST00000526977 IFNL4K9M1U5 179 aa15.78■□□□□ 0.12
VPS28-207ENST00000526977 MPPED1O15442 326 aa15.78■□□□□ 0.12
VPS28-207ENST00000526977 IGKV1-13P0DP09 117 aa15.78■□□□□ 0.12
VPS28-207ENST00000526977 C11orf71Q6IPW1 123 aa15.78■□□□□ 0.12
VPS28-207ENST00000526977 LDLRAD3Q86YD5 345 aa15.78■□□□□ 0.12
VPS28-207ENST00000526977 CCDC71LQ8N9Z2 235 aa15.78■□□□□ 0.12
VPS28-207ENST00000526977 SECTM1Q8WVN6 248 aa15.78■□□□□ 0.12
VPS28-207ENST00000526977 PCNPQ8WW12 178 aaKnown RBP15.78■□□□□ 0.12
VPS28-207ENST00000526977 CITED4Q96RK1 184 aa15.78■□□□□ 0.12
VPS28-207ENST00000526977 VRK1Q99986 396 aaPredicted RBP15.78■□□□□ 0.12
VPS28-207ENST00000526977 GSX2Q9BZM3 304 aa15.78■□□□□ 0.12
VPS28-207ENST00000526977 PKDREJQ9NTG1 2253 aa15.78■□□□□ 0.12
VPS28-207ENST00000526977 LEUTXA8MZ59 168 aa15.78■□□□□ 0.12
VPS28-207ENST00000526977 KCNAB3O43448 404 aa15.78■□□□□ 0.12
VPS28-207ENST00000526977 PSPNO60542 156 aa15.78■□□□□ 0.12
VPS28-207ENST00000526977 SOD3P08294 240 aa15.78■□□□□ 0.12
VPS28-207ENST00000526977 GGNBP1Q5YKI7 109 aa15.78■□□□□ 0.12
VPS28-207ENST00000526977 LRTM2Q8N967 370 aa15.78■□□□□ 0.12
VPS28-207ENST00000526977 MSI2Q96DH6 328 aaKnown RBP15.78■□□□□ 0.12
VPS28-207ENST00000526977 RAB1BQ9H0U4 201 aa15.78■□□□□ 0.12
VPS28-207ENST00000526977 AUP1Q9Y679 476 aa15.78■□□□□ 0.12
VPS28-207ENST00000526977 CLDN1O95832 211 aa15.77■□□□□ 0.12
VPS28-207ENST00000526977 SP5Q6BEB4 398 aaPredicted RBP15.77■□□□□ 0.12
VPS28-207ENST00000526977 LIAT1Q6ZQX7 453 aa15.77■□□□□ 0.12
VPS28-207ENST00000526977 SLC51BQ86UW2 128 aa15.77■□□□□ 0.12
VPS28-207ENST00000526977 C1orf87Q8N0U7 546 aa15.77■□□□□ 0.12
VPS28-207ENST00000526977 ZNF565Q8N9K5 539 aa15.77■□□□□ 0.12
VPS28-207ENST00000526977 INO80EQ8NBZ0 244 aaPredicted RBP15.77■□□□□ 0.12
VPS28-207ENST00000526977 OR10J5Q8NHC4 309 aa15.77■□□□□ 0.12
VPS28-207ENST00000526977 KIRREL1Q96J84 757 aa15.77■□□□□ 0.12
VPS28-207ENST00000526977 CABLES2Q9BTV7 478 aa15.77■□□□□ 0.12
VPS28-207ENST00000526977 SLC5A7Q9GZV3 580 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms