RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 GKN3PP0CG01 181 aa8.18□□□□□ -1.1
USP53-207ENST00000510852 OR13C7P0DN81 318 aa8.18□□□□□ -1.1
USP53-207ENST00000510852 FASP25445 335 aa8.18□□□□□ -1.1
USP53-207ENST00000510852 XGP55808 180 aa8.18□□□□□ -1.1
USP53-207ENST00000510852 MRPS10P82664 201 aaKnown RBP8.18□□□□□ -1.1
USP53-207ENST00000510852 HOXC5Q00444 222 aa8.18□□□□□ -1.1
USP53-207ENST00000510852 FCN2Q15485 313 aa8.18□□□□□ -1.1
USP53-207ENST00000510852 SYT14P1Q58G82 188 aa8.18□□□□□ -1.1
USP53-207ENST00000510852 DTX2Q86UW9 622 aa8.18□□□□□ -1.1
USP53-207ENST00000510852 OR13C6PQ8NH95 151 aa8.18□□□□□ -1.1
USP53-207ENST00000510852 C5orf66Q9H5L9 145 aa8.18□□□□□ -1.1
USP53-207ENST00000510852 SPANXB1Q9NS25 103 aaPredicted RBP8.18□□□□□ -1.1
USP53-207ENST00000510852 KCNS2Q9ULS6 477 aa8.18□□□□□ -1.1
USP53-207ENST00000510852 ENPP4Q9Y6X5 453 aa8.18□□□□□ -1.1
USP53-207ENST00000510852 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.17□□□□□ -1.1
USP53-207ENST00000510852 C1orf196B1AJZ1 125 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 PGCP20142 388 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 GUSBP1Q15486 140 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 ACSF3Q4G176 576 aaPredicted RBP8.17□□□□□ -1.1
USP53-207ENST00000510852 DMKNQ6E0U4 476 aaPredicted RBP8.17□□□□□ -1.1
USP53-207ENST00000510852 AMIGO2Q86SJ2 522 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 LINC01561Q8N1V8 128 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 C11orf42Q8N5U0 333 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 OR11H4Q8NGC9 324 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 OR10G4Q8NGN3 311 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 OR6K6Q8NGW6 343 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 OR5K1Q8NHB7 308 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 GPR119Q8TDV5 335 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 SMAP2Q8WU79 429 aaPredicted RBP8.17□□□□□ -1.1
USP53-207ENST00000510852 ZNF300Q96RE9 604 aaPredicted RBP8.17□□□□□ -1.1
USP53-207ENST00000510852 CHIAQ9BZP6 476 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 NOX4Q9NPH5 578 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 SPANXA1Q9NS26 97 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 TECRQ9NZ01 308 aaKnown RBP8.17□□□□□ -1.1
USP53-207ENST00000510852 RIMS3Q9UJD0 308 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 CHCHD2Q9Y6H1 151 aaPredicted RBP8.17□□□□□ -1.1
USP53-207ENST00000510852 RPS10-NUDT3A0A1W2PQS6 291 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 TRAPPC13A5PLN9 417 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 C17orf51A8MQB3 221 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 NUDT3O95989 172 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 SRD5A1P18405 259 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 FGF7P21781 194 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 GLRXP35754 106 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 ZNF136P52737 540 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 CLEC12AQ5QGZ9 265 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 AWAT2Q6E213 333 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 WDR82Q6UXN9 313 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 TMEM170AQ8WVE7 144 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 SARAFQ96BY9 339 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 SDSLQ96GA7 329 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 ZNF347Q96SE7 839 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 MS4A6AQ9H2W1 248 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 GALNT9Q9HCQ5 603 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 SH2D2AQ9NP31 389 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 CISD1Q9NZ45 108 aaKnown RBP8.17□□□□□ -1.1
USP53-207ENST00000510852 MED11Q9P086 117 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 NTNG1Q9Y2I2 539 aa8.17□□□□□ -1.1
USP53-207ENST00000510852 ACACAQ13085 2346 aa8.16□□□□□ -1.1
USP53-207ENST00000510852 TRAV24A0A0B4J272 114 aa8.16□□□□□ -1.1
USP53-207ENST00000510852 SRRM4A7MD48 611 aaKnown RBP8.16□□□□□ -1.1
USP53-207ENST00000510852 FFAR1O14842 300 aa8.16□□□□□ -1.1
USP53-207ENST00000510852 HMGB3O15347 200 aaKnown RBP8.16□□□□□ -1.1
USP53-207ENST00000510852 CCL3P10147 92 aa8.16□□□□□ -1.1
USP53-207ENST00000510852 FOLR2P14207 255 aa8.16□□□□□ -1.1
USP53-207ENST00000510852 AZU1P20160 251 aa8.16□□□□□ -1.1
USP53-207ENST00000510852 GATA3P23771 443 aa8.16□□□□□ -1.1
USP53-207ENST00000510852 PTGDSP41222 190 aa8.16□□□□□ -1.1
USP53-207ENST00000510852 OR5I1Q13606 314 aa8.16□□□□□ -1.1
USP53-207ENST00000510852 EIF2B1Q14232 305 aaKnown RBP8.16□□□□□ -1.1
USP53-207ENST00000510852 OR2T5Q6IEZ7 315 aa8.16□□□□□ -1.1
USP53-207ENST00000510852 OSR2Q8N2R0 312 aa8.16□□□□□ -1.1
USP53-207ENST00000510852 THAP8Q8NA92 274 aa8.16□□□□□ -1.1
USP53-207ENST00000510852 RELL2Q8NC24 303 aaPredicted RBP8.16□□□□□ -1.1
USP53-207ENST00000510852 OR2T29Q8NH02 315 aa8.16□□□□□ -1.1
USP53-207ENST00000510852 CMBLQ96DG6 245 aa8.16□□□□□ -1.1
USP53-207ENST00000510852 BTF3L4Q96K17 158 aa8.16□□□□□ -1.1
USP53-207ENST00000510852 DNAJC30Q96LL9 226 aa8.16□□□□□ -1.1
USP53-207ENST00000510852 LINC00052Q96N35 136 aa8.16□□□□□ -1.1
USP53-207ENST00000510852 MCHR1Q99705 422 aa8.16□□□□□ -1.1
USP53-207ENST00000510852 PRRG4Q9BZD6 226 aa8.16□□□□□ -1.1
USP53-207ENST00000510852 MED13Q9UHV7 2174 aa8.16□□□□□ -1.1
USP53-207ENST00000510852 A0A1W2PPI3 338 aa8.15□□□□□ -1.1
USP53-207ENST00000510852 MED19A0JLT2 244 aaPredicted RBP8.15□□□□□ -1.1
USP53-207ENST00000510852 GNGT2O14610 69 aa8.15□□□□□ -1.1
USP53-207ENST00000510852 TOMM40O96008 361 aa8.15□□□□□ -1.1
USP53-207ENST00000510852 CD79AP11912 226 aa8.15□□□□□ -1.1
USP53-207ENST00000510852 ZNF117Q03924 483 aa8.15□□□□□ -1.1
USP53-207ENST00000510852 CLLU1Q5K131 121 aa8.15□□□□□ -1.1
USP53-207ENST00000510852 ZNF550Q7Z398 422 aa8.15□□□□□ -1.1
USP53-207ENST00000510852 SLC35F2Q8IXU6 374 aa8.15□□□□□ -1.1
USP53-207ENST00000510852 FDCSPQ8NFU4 85 aa8.15□□□□□ -1.1
USP53-207ENST00000510852 PSMG3-AS1Q96PY0 264 aa8.15□□□□□ -1.1
USP53-207ENST00000510852 DPCDQ9BVM2 203 aaPredicted RBP8.15□□□□□ -1.1
USP53-207ENST00000510852 OR51J1Q9H342 316 aa8.15□□□□□ -1.1
USP53-207ENST00000510852 ZNF665Q9H7R5 613 aa8.15□□□□□ -1.1
USP53-207ENST00000510852 Q9H8V8 135 aa8.15□□□□□ -1.1
USP53-207ENST00000510852 EXOSC3Q9NQT5 275 aaKnown RBP8.15□□□□□ -1.1
USP53-207ENST00000510852 DOCK10Q96BY6 2186 aa8.15□□□□□ -1.1
USP53-207ENST00000510852 CPSF4LA6NMK7 179 aaKnown RBP8.15□□□□□ -1.1
USP53-207ENST00000510852 DEGS1O15121 323 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms