RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 OR2M4Q96R27 311 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 SIGMAR1Q99720 223 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 MICU1Q9BPX6 476 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 NRIP2Q9BQI9 281 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 LXNQ9BS40 222 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 OR8D2Q9GZM6 311 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 SYT4Q9H2B2 425 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 ZDHHC11Q9H8X9 412 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 PLEKHA1Q9HB21 404 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 LRTM1Q9HBL6 345 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 SLC17A5Q9NRA2 495 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 SPANXB1Q9NS25 103 aaPredicted RBP1.33□□□□□ -2.2
NUP54-208ENST00000508604 LYRM2Q9NU23 88 aaPredicted RBP1.33□□□□□ -2.2
NUP54-208ENST00000508604 DUS2Q9NX74 493 aaKnown RBP1.33□□□□□ -2.2
NUP54-208ENST00000508604 OPTCQ9UBM4 332 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 ZNF629Q9UEG4 869 aaPredicted RBP1.33□□□□□ -2.2
NUP54-208ENST00000508604 CD84Q9UIB8 345 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 ZNF230Q9UIE0 474 aaPredicted RBP1.33□□□□□ -2.2
NUP54-208ENST00000508604 C14orf166Q9Y224 244 aaKnown RBP1.33□□□□□ -2.2
NUP54-208ENST00000508604 SLC17A4Q9Y2C5 497 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 UFC1Q9Y3C8 167 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 CDH10Q9Y6N8 788 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 PIK3C2BO00750 1634 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 NFAT5O94916 1531 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 URB2Q14146 1524 aaKnown RBP1.33□□□□□ -2.2
NUP54-208ENST00000508604 ZSWIM8A7E2V4 1837 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 RALGAPBQ86X10 1494 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 CRB1P82279 1406 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 TNS3Q68CZ2 1445 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 SPHKAPQ2M3C7 1700 aa1.33□□□□□ -2.2
NUP54-208ENST00000508604 ZNF142P52746 1687 aaPredicted RBP1.33□□□□□ -2.2
NUP54-208ENST00000508604 TIAM1Q13009 1591 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 NWD1Q149M9 1564 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 MEIKINA0A087WXM9 373 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 BORCS7-ASMTA0A0B4J1R7 106 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 IGHV2OR16-5A0A0B4J2B6 119 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 KBTBD11-OT1A0A1B0GTJ5 212 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 A0A1W2PP18 115 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 ANKRD20A5PA0PJZ0 165 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 C7orf66A4D0T2 115 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 RNF222A6NCQ9 220 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 LRIT2A6NDA9 550 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 A6NDX4 124 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 TVP23AA6NH52 213 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 SLC22A20A6NK97 555 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 DHRS7CA6NNS2 312 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 HMSDA8MTL9 139 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 C21orf140B9A014 251 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 FTCDNL1E5RQL4 147 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 H0YL77 283 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 C15orf65H3BRN8 121 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 MANBAO00462 879 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 CASKO14936 926 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 RBFOX2O43251 390 aaKnown RBP eCLIP1.32□□□□□ -2.2
NUP54-208ENST00000508604 MFSD11O43934 449 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 SOX15O60248 233 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 SLC19A2O60779 497 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 SCGNO76038 276 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 RAB36O95755 333 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 HLA-AP01891 365 aaKnown RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 HBZP02008 142 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 PMP2P02689 132 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 ORM1P02763 201 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 SEMG1P04279 462 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 IGHV4-34P06331 123 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 GIPP09681 153 aaPredicted RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 MPC1LP0DKB6 136 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 GZMBP10144 247 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 HIST1H1EP10412 219 aaKnown RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 ESDP10768 282 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 HIST1H1CP16403 213 aaKnown RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 IL1RNP18510 177 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 TPSB2P20231 275 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 RAB5AP20339 215 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 PSMA1P25786 263 aaKnown RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 IMPA1P29218 277 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 APLNRP35414 380 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 NUMBP49757 651 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 NDUFA8P51970 172 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 TAS2R43P59537 309 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 TPI1P60174 286 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 STXBP1P61764 594 aaKnown RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 GNG3P63215 75 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 ST3GAL3Q11203 375 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 TCP10Q12799 353 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 ZP4Q12836 540 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 HTR4Q13639 388 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 EIF2B1Q14232 305 aaKnown RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 FZD2Q14332 565 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 TPSAB1Q15661 275 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 UBE2SQ16763 222 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 LTC4SQ16873 150 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 IQCJQ1A5X6 159 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 ADPRMQ3LIE5 342 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 TIMM23BQ5SRD1 257 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 LDLRAD2Q5SZI1 272 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 CST9Q5W186 159 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 PRSS54Q6PEW0 395 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 CD200R1LQ6Q8B3 271 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 CBLN3Q6UW01 205 aa1.32□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms