RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 ZNF638Q14966 1978 aaKnown RBP11.47□□□□□ -0.57
PTPRF-215ENST00000496447 CA11O75493 328 aa11.47□□□□□ -0.57
PTPRF-215ENST00000496447 ACAA2P42765 397 aaKnown RBP11.47□□□□□ -0.57
PTPRF-215ENST00000496447 ZCCHC14Q8WYQ9 949 aaKnown RBP11.47□□□□□ -0.57
PTPRF-215ENST00000496447 SNX22Q96L94 193 aa11.47□□□□□ -0.57
PTPRF-215ENST00000496447 UCP2P55851 309 aa11.46□□□□□ -0.57
PTPRF-215ENST00000496447 Q8WTZ3 238 aa11.46□□□□□ -0.57
PTPRF-215ENST00000496447 ATP5SQ99766 215 aa11.46□□□□□ -0.57
PTPRF-215ENST00000496447 CISD1Q9NZ45 108 aaKnown RBP11.46□□□□□ -0.57
PTPRF-215ENST00000496447 ADAMTS7Q9UKP4 1686 aa11.46□□□□□ -0.57
PTPRF-215ENST00000496447 TRAV39A0A0B4J263 110 aa11.46□□□□□ -0.57
PTPRF-215ENST00000496447 IGKV1-8A0A0C4DH67 115 aa11.46□□□□□ -0.57
PTPRF-215ENST00000496447 CTSSP25774 331 aa11.46□□□□□ -0.57
PTPRF-215ENST00000496447 ERVFRD-1P60508 538 aa11.46□□□□□ -0.57
PTPRF-215ENST00000496447 PUSL1Q8N0Z8 303 aaKnown RBP11.46□□□□□ -0.57
PTPRF-215ENST00000496447 RBM14Q96PK6 669 aaKnown RBP11.46□□□□□ -0.57
PTPRF-215ENST00000496447 CCL28Q9NRJ3 127 aa11.46□□□□□ -0.57
PTPRF-215ENST00000496447 SLC2A8Q9NY64 477 aa11.46□□□□□ -0.57
PTPRF-215ENST00000496447 TRAV34A0A0B4J273 112 aa11.46□□□□□ -0.58
PTPRF-215ENST00000496447 RBFOX3A6NFN3 312 aa11.46□□□□□ -0.58
PTPRF-215ENST00000496447 PRR19A6NJB7 356 aa11.46□□□□□ -0.58
PTPRF-215ENST00000496447 OR4C45A6NMZ5 311 aa11.46□□□□□ -0.58
PTPRF-215ENST00000496447 SYNGR2O43760 224 aa11.46□□□□□ -0.58
PTPRF-215ENST00000496447 EIF4EBP2Q13542 120 aaPredicted RBP11.46□□□□□ -0.58
PTPRF-215ENST00000496447 SURF2Q15527 256 aaPredicted RBP11.46□□□□□ -0.58
PTPRF-215ENST00000496447 ASCL3Q9NQ33 180 aa11.46□□□□□ -0.58
PTPRF-215ENST00000496447 PARP11Q9NR21 331 aa11.46□□□□□ -0.58
PTPRF-215ENST00000496447 TMEM74BQ9NUR3 256 aa11.46□□□□□ -0.58
PTPRF-215ENST00000496447 SF3B6Q9Y3B4 125 aaKnown RBP11.46□□□□□ -0.58
PTPRF-215ENST00000496447 PRDX2P32119 198 aa11.46□□□□□ -0.58
PTPRF-215ENST00000496447 OR1L1Q8NH94 360 aa11.46□□□□□ -0.58
PTPRF-215ENST00000496447 RPS4Y2Q8TD47 263 aa11.46□□□□□ -0.58
PTPRF-215ENST00000496447 POLR2AP24928 1970 aaKnown RBP11.45□□□□□ -0.58
PTPRF-215ENST00000496447 COL5A3P25940 1745 aaPredicted RBP11.45□□□□□ -0.58
PTPRF-215ENST00000496447 SIAH2O43255 324 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 ZNF737O75373 536 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 PPYP01298 95 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 HPXP02790 462 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 APELAP0DMC3 54 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 HTN1P15515 57 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 ZP4Q12836 540 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 FAM27BQ5VT28 67 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 OR10C1Q96KK4 312 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 CENPVL1A0A0U1RR11 272 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 A0A1W2PNV4 684 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 WNT2BQ93097 391 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 CHODLQ9H9P2 273 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 HS3ST3B1Q9Y662 390 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 REG1BP48304 166 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 PAFAH1B2P68402 229 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 ATP1A1-AS1Q5TC04 95 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 RABAC1Q9UI14 185 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 COL11A2P13942 1736 aaPredicted RBP11.45□□□□□ -0.58
PTPRF-215ENST00000496447 TRBV5-3A0A0A0MS03 114 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 TSPAN2O60636 221 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 GCGP01275 180 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 HOXA4Q00056 320 aaPredicted RBP11.45□□□□□ -0.58
PTPRF-215ENST00000496447 IL24Q13007 206 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 Q1RN00 199 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 ZNF385CQ66K41 422 aaPredicted RBP11.45□□□□□ -0.58
PTPRF-215ENST00000496447 QSER1Q2KHR3 1735 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 DUXBA0A1W2PPF3 345 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 RPL36A-HNRNPH2H7BZ11 118 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 SYNGR1O43759 233 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 PSG4Q00888 419 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 KLF9Q13886 244 aaPredicted RBP11.45□□□□□ -0.58
PTPRF-215ENST00000496447 ZNF658BQ4V348 819 aaPredicted RBP11.45□□□□□ -0.58
PTPRF-215ENST00000496447 TEX30Q5JUR7 227 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 FHL5Q5TD97 284 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 TEX29Q8N6K0 151 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 RHOVQ96L33 236 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 CCL13Q99616 98 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 SLC7A10Q9NS82 523 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 TECRQ9NZ01 308 aaKnown RBP11.45□□□□□ -0.58
PTPRF-215ENST00000496447 OR2W1Q9Y3N9 320 aa11.45□□□□□ -0.58
PTPRF-215ENST00000496447 TTRP02766 147 aa11.44□□□□□ -0.58
PTPRF-215ENST00000496447 IL11P20809 199 aa11.44□□□□□ -0.58
PTPRF-215ENST00000496447 RPS4Y1P22090 263 aaKnown RBP11.44□□□□□ -0.58
PTPRF-215ENST00000496447 MMP16P51512 607 aa11.44□□□□□ -0.58
PTPRF-215ENST00000496447 GUCA2BQ16661 112 aa11.44□□□□□ -0.58
PTPRF-215ENST00000496447 RBPMS2Q6ZRY4 209 aaKnown RBP11.44□□□□□ -0.58
PTPRF-215ENST00000496447 OR4A4PQ8NGN8 299 aa11.44□□□□□ -0.58
PTPRF-215ENST00000496447 ZNF714Q96N38 554 aa11.44□□□□□ -0.58
PTPRF-215ENST00000496447 NRIP2Q9BQI9 281 aa11.44□□□□□ -0.58
PTPRF-215ENST00000496447 GHITMQ9H3K2 345 aa11.44□□□□□ -0.58
PTPRF-215ENST00000496447 TNS1Q9HBL0 1735 aaKnown RBP11.44□□□□□ -0.58
PTPRF-215ENST00000496447 A0A1W2PPE3 182 aa11.44□□□□□ -0.58
PTPRF-215ENST00000496447 NFAM1Q8NET5 270 aaPredicted RBP11.44□□□□□ -0.58
PTPRF-215ENST00000496447 OR2V2Q96R30 315 aa11.44□□□□□ -0.58
PTPRF-215ENST00000496447 FBXL17Q9UF56 701 aa11.44□□□□□ -0.58
PTPRF-215ENST00000496447 GREM1O60565 184 aa11.44□□□□□ -0.58
PTPRF-215ENST00000496447 DAOP14920 347 aa11.44□□□□□ -0.58
PTPRF-215ENST00000496447 DYNLT3P51808 116 aa11.44□□□□□ -0.58
PTPRF-215ENST00000496447 OR8I2Q8N0Y5 310 aa11.44□□□□□ -0.58
PTPRF-215ENST00000496447 ZNF488Q96MN9 340 aa11.44□□□□□ -0.58
PTPRF-215ENST00000496447 A0A1W2PQM1 296 aa11.44□□□□□ -0.58
PTPRF-215ENST00000496447 J3KRW8 73 aa11.44□□□□□ -0.58
PTPRF-215ENST00000496447 SPINK4O60575 86 aa11.44□□□□□ -0.58
PTPRF-215ENST00000496447 ADAM11O75078 769 aa11.44□□□□□ -0.58
PTPRF-215ENST00000496447 CXCL2P19875 107 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 97.6 ms