RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 ZNF691Q5VV52 312 aa10.9□□□□□ -0.66
PRPF40A-211ENST00000493468 PYHIN1Q6K0P9 492 aa10.9□□□□□ -0.66
PRPF40A-211ENST00000493468 OR13C3Q8NGS6 347 aa10.9□□□□□ -0.66
PRPF40A-211ENST00000493468 CANT1Q8WVQ1 401 aa10.9□□□□□ -0.66
PRPF40A-211ENST00000493468 THAP7Q9BT49 309 aaPredicted RBP10.9□□□□□ -0.66
PRPF40A-211ENST00000493468 HIPK2Q9H2X6 1198 aa10.9□□□□□ -0.66
PRPF40A-211ENST00000493468 FRRS1LQ9P0K9 344 aa10.9□□□□□ -0.66
PRPF40A-211ENST00000493468 KIAA1456Q9P272 454 aa10.9□□□□□ -0.66
PRPF40A-211ENST00000493468 FOXA2Q9Y261 457 aaPredicted RBP10.9□□□□□ -0.66
PRPF40A-211ENST00000493468 ERGIC3Q9Y282 383 aa10.9□□□□□ -0.66
PRPF40A-211ENST00000493468 HECTD4Q9Y4D8 3996 aa10.89□□□□□ -0.67
PRPF40A-211ENST00000493468 A0A1W2PN81 502 aa10.89□□□□□ -0.67
PRPF40A-211ENST00000493468 AQP12BA6NM10 295 aa10.89□□□□□ -0.67
PRPF40A-211ENST00000493468 ZAR1LA6NP61 321 aa10.89□□□□□ -0.67
PRPF40A-211ENST00000493468 H0Y980 276 aa10.89□□□□□ -0.67
PRPF40A-211ENST00000493468 SLC31A2O15432 143 aa10.89□□□□□ -0.67
PRPF40A-211ENST00000493468 CHRNA7P36544 502 aa10.89□□□□□ -0.67
PRPF40A-211ENST00000493468 CCR9P51686 369 aa10.89□□□□□ -0.67
PRPF40A-211ENST00000493468 ACTBP60709 375 aa10.89□□□□□ -0.67
PRPF40A-211ENST00000493468 ZNF85Q03923 595 aa10.89□□□□□ -0.67
PRPF40A-211ENST00000493468 RAB40BQ12829 278 aa10.89□□□□□ -0.67
PRPF40A-211ENST00000493468 C5orf64Q2M2E5 130 aa10.89□□□□□ -0.67
PRPF40A-211ENST00000493468 TP53I3Q53FA7 332 aa10.89□□□□□ -0.67
PRPF40A-211ENST00000493468 STEAP3Q658P3 488 aa10.89□□□□□ -0.67
PRPF40A-211ENST00000493468 GTSCR1Q86UQ5 136 aa10.89□□□□□ -0.67
PRPF40A-211ENST00000493468 AQP12AQ8IXF9 295 aa10.89□□□□□ -0.67
PRPF40A-211ENST00000493468 SUMF2Q8NBJ7 301 aa10.89□□□□□ -0.67
PRPF40A-211ENST00000493468 OR51A4Q8NGJ6 313 aa10.89□□□□□ -0.67
PRPF40A-211ENST00000493468 OR10AC1Q8NH08 325 aa10.89□□□□□ -0.67
PRPF40A-211ENST00000493468 CPNE2Q96FN4 548 aaPredicted RBP10.89□□□□□ -0.67
PRPF40A-211ENST00000493468 ANKRD60Q9BZ19 345 aa10.89□□□□□ -0.67
PRPF40A-211ENST00000493468 TUBA4BQ9H853 241 aa10.89□□□□□ -0.67
PRPF40A-211ENST00000493468 IGHV3-43A0A0B4J1X8 118 aa10.88□□□□□ -0.67
PRPF40A-211ENST00000493468 NBR2O15453 112 aa10.88□□□□□ -0.67
PRPF40A-211ENST00000493468 SULT1B1O43704 296 aa10.88□□□□□ -0.67
PRPF40A-211ENST00000493468 NDUFA3O95167 84 aa10.88□□□□□ -0.67
PRPF40A-211ENST00000493468 IGHV3-43DP0DP04 118 aa10.88□□□□□ -0.67
PRPF40A-211ENST00000493468 DAPP51397 102 aa10.88□□□□□ -0.67
PRPF40A-211ENST00000493468 NANOS3P60323 173 aaKnown RBP10.88□□□□□ -0.67
PRPF40A-211ENST00000493468 TMED1Q13445 227 aa10.88□□□□□ -0.67
PRPF40A-211ENST00000493468 ZSCAN26Q16670 478 aa10.88□□□□□ -0.67
PRPF40A-211ENST00000493468 ECSCRQ19T08 205 aa10.88□□□□□ -0.67
PRPF40A-211ENST00000493468 PIGYQ3MUY2 71 aa10.88□□□□□ -0.67
PRPF40A-211ENST00000493468 NHLRC3Q5JS37 347 aa10.88□□□□□ -0.67
PRPF40A-211ENST00000493468 LIN54Q6MZP7 749 aa10.88□□□□□ -0.67
PRPF40A-211ENST00000493468 LINC00322Q6ZN03 302 aaPredicted RBP10.88□□□□□ -0.67
PRPF40A-211ENST00000493468 KCTD20Q7Z5Y7 419 aa10.88□□□□□ -0.67
PRPF40A-211ENST00000493468 NPBQ8NG41 125 aa10.88□□□□□ -0.67
PRPF40A-211ENST00000493468 TMEM106AQ96A25 262 aa10.88□□□□□ -0.67
PRPF40A-211ENST00000493468 RBMXL1Q96E39 390 aaKnown RBP10.88□□□□□ -0.67
PRPF40A-211ENST00000493468 IL4I1Q96RQ9 567 aa10.88□□□□□ -0.67
PRPF40A-211ENST00000493468 ZNF251Q9BRH9 671 aa10.88□□□□□ -0.67
PRPF40A-211ENST00000493468 RSRP1Q9BUV0 290 aa10.88□□□□□ -0.67
PRPF40A-211ENST00000493468 RETNQ9HD89 108 aa10.88□□□□□ -0.67
PRPF40A-211ENST00000493468 RAB9BQ9NP90 201 aa10.88□□□□□ -0.67
PRPF40A-211ENST00000493468 DNAH10Q8IVF4 4471 aa10.87□□□□□ -0.67
PRPF40A-211ENST00000493468 RGS11O94810 467 aa10.87□□□□□ -0.67
PRPF40A-211ENST00000493468 CSTBP04080 98 aaKnown RBP10.87□□□□□ -0.67
PRPF40A-211ENST00000493468 ZNF134P52741 427 aa10.87□□□□□ -0.67
PRPF40A-211ENST00000493468 NDPQ00604 133 aa10.87□□□□□ -0.67
PRPF40A-211ENST00000493468 CT45A1Q5HYN5 189 aa10.87□□□□□ -0.67
PRPF40A-211ENST00000493468 RNLSQ5VYX0 342 aa10.87□□□□□ -0.67
PRPF40A-211ENST00000493468 ZNF660Q6AZW8 331 aaPredicted RBP10.87□□□□□ -0.67
PRPF40A-211ENST00000493468 CD200R1LQ6Q8B3 271 aa10.87□□□□□ -0.67
PRPF40A-211ENST00000493468 ASCL4Q6XD76 172 aa10.87□□□□□ -0.67
PRPF40A-211ENST00000493468 PARP16Q8N5Y8 322 aa10.87□□□□□ -0.67
PRPF40A-211ENST00000493468 OR5D14Q8NGL3 314 aa10.87□□□□□ -0.67
PRPF40A-211ENST00000493468 CT45A3Q8NHU0 189 aa10.87□□□□□ -0.67
PRPF40A-211ENST00000493468 RHOVQ96L33 236 aa10.87□□□□□ -0.67
PRPF40A-211ENST00000493468 TMED9Q9BVK6 235 aa10.87□□□□□ -0.67
PRPF40A-211ENST00000493468 FBXO7Q9Y3I1 522 aa10.87□□□□□ -0.67
PRPF40A-211ENST00000493468 CEPT1Q9Y6K0 416 aa10.87□□□□□ -0.67
PRPF40A-211ENST00000493468 OR4C45A6NMZ5 311 aa10.86□□□□□ -0.67
PRPF40A-211ENST00000493468 B2RBV5 119 aa10.86□□□□□ -0.67
PRPF40A-211ENST00000493468 GABRPO00591 440 aa10.86□□□□□ -0.67
PRPF40A-211ENST00000493468 DCTN3O75935 186 aa10.86□□□□□ -0.67
PRPF40A-211ENST00000493468 IGHV3-11P01762 117 aa10.86□□□□□ -0.67
PRPF40A-211ENST00000493468 RPSAP08865 295 aaKnown RBP10.86□□□□□ -0.67
PRPF40A-211ENST00000493468 ZP3P21754 424 aa10.86□□□□□ -0.67
PRPF40A-211ENST00000493468 EPHA2P29317 976 aa10.86□□□□□ -0.67
PRPF40A-211ENST00000493468 ATP6V1E1P36543 226 aa10.86□□□□□ -0.67
PRPF40A-211ENST00000493468 ZNF497Q6ZNH5 498 aa10.86□□□□□ -0.67
PRPF40A-211ENST00000493468 LINC00596Q86U02 117 aa10.86□□□□□ -0.67
PRPF40A-211ENST00000493468 SERPINA12Q8IW75 414 aa10.86□□□□□ -0.67
PRPF40A-211ENST00000493468 UBALD1Q8TB05 177 aa10.86□□□□□ -0.67
PRPF40A-211ENST00000493468 CCDC124Q96CT7 223 aaKnown RBP10.86□□□□□ -0.67
PRPF40A-211ENST00000493468 FAM110AQ9BQ89 295 aa10.86□□□□□ -0.67
PRPF40A-211ENST00000493468 FAM107BQ9H098 131 aa10.86□□□□□ -0.67
PRPF40A-211ENST00000493468 SLA2Q9H6Q3 261 aa10.86□□□□□ -0.67
PRPF40A-211ENST00000493468 ZNF581Q9P0T4 197 aa10.86□□□□□ -0.67
PRPF40A-211ENST00000493468 NUBP2Q9Y5Y2 271 aa10.86□□□□□ -0.67
PRPF40A-211ENST00000493468 KIAA1109Q2LD37 5005 aa10.86□□□□□ -0.67
PRPF40A-211ENST00000493468 SHISA3A0PJX4 238 aa10.85□□□□□ -0.67
PRPF40A-211ENST00000493468 SPINT2O43291 252 aa10.85□□□□□ -0.67
PRPF40A-211ENST00000493468 OR7C1O76099 320 aaPredicted RBP10.85□□□□□ -0.67
PRPF40A-211ENST00000493468 LY6G6CO95867 125 aa10.85□□□□□ -0.67
PRPF40A-211ENST00000493468 HTR1AP08908 422 aa10.85□□□□□ -0.67
PRPF40A-211ENST00000493468 RBM11P57052 281 aaKnown RBP10.85□□□□□ -0.67
PRPF40A-211ENST00000493468 TMEM267Q0VDI3 215 aaPredicted RBP10.85□□□□□ -0.67
PRPF40A-211ENST00000493468 RSU1Q15404 277 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms