RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 MXD1Q05195 221 aa13.17□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 FAM189A2Q15884 450 aa13.17□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 PLA1AQ53H76 456 aa13.17□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 SLC16A12Q6ZSM3 486 aa13.17□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 LEAP2Q969E1 77 aa13.17□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 MMP28Q9H239 520 aa13.17□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 KCNIP1Q9NZI2 227 aa13.17□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 DPM3Q9P2X0 92 aa13.17□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 DAPK2Q9UIK4 370 aa13.17□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 HILPDAQ9Y5L2 63 aa13.17□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 VGLL3A8MV65 326 aa13.16□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 F2RL2O00254 374 aa13.16□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 SDCBPO00560 298 aaPredicted RBP13.16□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 IGHV3-7P01780 117 aa13.16□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 HBZP02008 142 aa13.16□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 GNG10P50151 68 aa13.16□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 TMEM50BP56557 158 aa13.16□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 RPL15P61313 204 aaKnown RBP13.16□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 TMEM30BQ3MIR4 351 aa13.16□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 Q6ZTK2 550 aa13.16□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 ZNF554Q86TJ5 538 aa13.16□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 PRR18Q8N4B5 295 aa13.16□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 OR52M1Q8NGK5 317 aa13.16□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 PTX4Q96A99 478 aa13.16□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 CREB3L1Q96BA8 519 aa13.16□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 ARHGAP5-AS1Q96IT6 56 aa13.16□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 PECRQ9BY49 303 aa13.16□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 MRPS26Q9BYN8 205 aaKnown RBP13.16□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 CHMP1AQ9HD42 196 aaPredicted RBP13.16□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 ABCB10Q9NRK6 738 aa13.16□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 GFOD1Q9NXC2 390 aa13.16□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 AK3Q9UIJ7 227 aa13.16□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 PSG11Q9UQ72 335 aa13.16□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 AMMECR1Q9Y4X0 333 aaPredicted RBP13.16□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 LEUTXA8MZ59 168 aa13.15□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 BUB1B-PAK6H3BSN5 160 aa13.15□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 J3QR06 171 aa13.15□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 NAPSAO96009 420 aa13.15□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 CEACAM3P40198 252 aa13.15□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 COMPP49747 757 aaPredicted RBP13.15□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 LSM3P62310 102 aaKnown RBP13.15□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 PLAC9Q5JTB6 97 aa13.15□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 OR13F1Q8NGS4 319 aa13.15□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 OR1L1Q8NH94 360 aa13.15□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 FUNDC2Q9BWH2 189 aa13.15□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 RIMS4Q9H426 269 aaPredicted RBP13.15□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 TAF9BQ9HBM6 251 aa13.15□□□□□ -0.3
MSH5-SAPCD1-206ENST00000491552 IGHV3-43A0A0B4J1X8 118 aa13.14□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 METTL21EPA6NDL7 271 aa13.14□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 IGHV3-43DP0DP04 118 aa13.14□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 SNRPBP14678 240 aaKnown RBP13.14□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 TGFBR1P36897 503 aa13.14□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 DYNLT3P51808 116 aa13.14□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 LOXL3P58215 753 aa13.14□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 FOXL1Q12952 345 aa13.14□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 LY6EQ16553 131 aa13.14□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 MOGAT2Q3SYC2 334 aa13.14□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 TPTE2P1Q5T6R2 138 aa13.14□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 C12orf54Q6X4T0 127 aa13.14□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 MOB1BQ7L9L4 216 aa13.14□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 OR10R2Q8NGX6 335 aa13.14□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 SETD6Q8TBK2 473 aa13.14□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 LGALS14Q8TCE9 139 aa13.14□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 PIFOQ8TCI5 191 aa13.14□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 TAF15Q92804 592 aaKnown RBP eCLIP13.14□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 RAB3CQ96E17 227 aa13.14□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 HDHD3Q9BSH5 251 aaPredicted RBP13.14□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 C12orf4Q9NQ89 552 aa13.14□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 C1RLQ9NZP8 487 aa13.14□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 GNG12Q9UBI6 72 aa13.14□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 TRBV6-6A0A0A6YYG2 114 aa13.13□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 ARHGDIBP52566 201 aa13.13□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 HMGN3Q15651 99 aa13.13□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 Q3ZCU0 254 aa13.13□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 AWAT1Q58HT5 328 aa13.13□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 IDNKQ5T6J7 187 aa13.13□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 DHRS7BQ6IAN0 325 aaPredicted RBP13.13□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 ZNF880Q6PDB4 577 aa13.13□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 LIAT1Q6ZQX7 453 aa13.13□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 OR10X1Q8NGY0 326 aa13.13□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 CMSS1Q9BQ75 279 aaKnown RBP13.13□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 ATG5Q9H1Y0 275 aa13.13□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 ABRACLQ9P1F3 81 aa13.13□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 A0A1W2PPE3 182 aa13.12□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 OOSP1A8MZH6 123 aa13.12□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 LY6LH3BQJ8 138 aa13.12□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 RAB27BO00194 218 aa13.12□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 NDUFA7O95182 113 aa13.12□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 RAB13P51153 203 aa13.12□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 RAG2P55895 527 aa13.12□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 SCAND1P57086 179 aa13.12□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 MADCAM1Q13477 382 aa13.12□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 OLFML2AQ68BL7 652 aa13.12□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 FAM53AQ6NSI3 398 aaPredicted RBP13.12□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 CCDC144NLQ6NUI1 221 aa13.12□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 Q6ZPA2 131 aa13.12□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 LINC00311Q8N616 119 aa13.12□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 C8orf31Q8N9H6 132 aa13.12□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 OR10V1Q8NGI7 309 aa13.12□□□□□ -0.31
MSH5-SAPCD1-206ENST00000491552 TOMM40LQ969M1 308 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms