RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 TRAPPC2LH3BP13 241 aa10.42□□□□□ -0.74
COL3A1-206ENST00000487010 CNOT4O95628 575 aaKnown RBP10.42□□□□□ -0.74
COL3A1-206ENST00000487010 OPN1MWP04001 364 aa10.42□□□□□ -0.74
COL3A1-206ENST00000487010 SERPINE2P07093 398 aa10.42□□□□□ -0.74
COL3A1-206ENST00000487010 PGA5P0DJD9 388 aa10.42□□□□□ -0.74
COL3A1-206ENST00000487010 OPN1MW2P0DN77 364 aa10.42□□□□□ -0.74
COL3A1-206ENST00000487010 OPN1MW3P0DN78 364 aa10.42□□□□□ -0.74
COL3A1-206ENST00000487010 PSG2P11465 335 aa10.42□□□□□ -0.74
COL3A1-206ENST00000487010 PKIAP61925 76 aa10.42□□□□□ -0.74
COL3A1-206ENST00000487010 IL11RAQ14626 422 aa10.42□□□□□ -0.74
COL3A1-206ENST00000487010 CEACAM21Q3KPI0 293 aa10.42□□□□□ -0.74
COL3A1-206ENST00000487010 C4orf17Q53FE4 359 aa10.42□□□□□ -0.74
COL3A1-206ENST00000487010 ZNF324BQ6AW86 544 aaPredicted RBP10.42□□□□□ -0.74
COL3A1-206ENST00000487010 Q6ZRM9 215 aa10.42□□□□□ -0.74
COL3A1-206ENST00000487010 SSX7Q7RTT5 188 aa10.42□□□□□ -0.74
COL3A1-206ENST00000487010 SPEM1Q8N4L4 309 aa10.42□□□□□ -0.74
COL3A1-206ENST00000487010 MRPL30Q8TCC3 161 aaKnown RBP10.42□□□□□ -0.74
COL3A1-206ENST00000487010 PSMG3Q9BT73 122 aaPredicted RBP10.42□□□□□ -0.74
COL3A1-206ENST00000487010 RIMS4Q9H426 269 aaPredicted RBP10.42□□□□□ -0.74
COL3A1-206ENST00000487010 LRFN1Q9P244 771 aa10.42□□□□□ -0.74
COL3A1-206ENST00000487010 RNF150Q9ULK6 438 aa10.42□□□□□ -0.74
COL3A1-206ENST00000487010 OR2W1Q9Y3N9 320 aa10.42□□□□□ -0.74
COL3A1-206ENST00000487010 JMJD7P0C870 316 aa10.41□□□□□ -0.74
COL3A1-206ENST00000487010 FGF8P55075 233 aaPredicted RBP10.41□□□□□ -0.74
COL3A1-206ENST00000487010 ARL16Q0P5N6 197 aa10.41□□□□□ -0.74
COL3A1-206ENST00000487010 IZUMO4Q1ZYL8 232 aa10.41□□□□□ -0.74
COL3A1-206ENST00000487010 ACSF3Q4G176 576 aaPredicted RBP10.41□□□□□ -0.74
COL3A1-206ENST00000487010 C20orf204Q6ZNR8 217 aa10.41□□□□□ -0.74
COL3A1-206ENST00000487010 MKXQ8IYA7 352 aa10.41□□□□□ -0.74
COL3A1-206ENST00000487010 ZDHHC23Q8IYP9 409 aa10.41□□□□□ -0.74
COL3A1-206ENST00000487010 ZNF525Q8N782 197 aa10.41□□□□□ -0.74
COL3A1-206ENST00000487010 OR51H1Q8NH63 302 aa10.41□□□□□ -0.74
COL3A1-206ENST00000487010 GTF3AQ92664 365 aaKnown RBP10.41□□□□□ -0.74
COL3A1-206ENST00000487010 SGCZQ96LD1 299 aa10.41□□□□□ -0.74
COL3A1-206ENST00000487010 SSX3Q99909 188 aa10.41□□□□□ -0.74
COL3A1-206ENST00000487010 CABLES2Q9BTV7 478 aa10.41□□□□□ -0.74
COL3A1-206ENST00000487010 CTDSP1Q9GZU7 261 aa10.41□□□□□ -0.74
COL3A1-206ENST00000487010 CDH20Q9HBT6 801 aa10.41□□□□□ -0.74
COL3A1-206ENST00000487010 UFSP2Q9NUQ7 469 aa10.41□□□□□ -0.74
COL3A1-206ENST00000487010 OR14J1Q9UGF5 321 aa10.41□□□□□ -0.74
COL3A1-206ENST00000487010 VAX2Q9UIW0 290 aa10.41□□□□□ -0.74
COL3A1-206ENST00000487010 TRBV6-6A0A0A6YYG2 114 aa10.4□□□□□ -0.74
COL3A1-206ENST00000487010 SYNGR2O43760 224 aa10.4□□□□□ -0.74
COL3A1-206ENST00000487010 CYTIPO60759 359 aa10.4□□□□□ -0.74
COL3A1-206ENST00000487010 P04436 131 aa10.4□□□□□ -0.74
COL3A1-206ENST00000487010 RFPL3SP0C7P2 107 aa10.4□□□□□ -0.74
COL3A1-206ENST00000487010 SLC23A3Q6PIS1 610 aa10.4□□□□□ -0.74
COL3A1-206ENST00000487010 REC114Q7Z4M0 266 aa10.4□□□□□ -0.74
COL3A1-206ENST00000487010 MRGPRGQ86SM5 289 aa10.4□□□□□ -0.74
COL3A1-206ENST00000487010 OR10J5Q8NHC4 309 aa10.4□□□□□ -0.74
COL3A1-206ENST00000487010 CLDN23Q96B33 292 aa10.4□□□□□ -0.74
COL3A1-206ENST00000487010 PACRGQ96M98 296 aaPredicted RBP10.4□□□□□ -0.74
COL3A1-206ENST00000487010 HIST1H2BLQ99880 126 aa10.4□□□□□ -0.74
COL3A1-206ENST00000487010 PSENENQ9NZ42 101 aa10.4□□□□□ -0.74
COL3A1-206ENST00000487010 PITPNC1Q9UKF7 332 aa10.4□□□□□ -0.74
COL3A1-206ENST00000487010 C9J4A7 227 aa10.4□□□□□ -0.75
COL3A1-206ENST00000487010 IGHV3-9P01782 118 aa10.4□□□□□ -0.75
COL3A1-206ENST00000487010 WNT2P09544 360 aa10.4□□□□□ -0.75
COL3A1-206ENST00000487010 METTL15P1P0C7V9 234 aa10.4□□□□□ -0.75
COL3A1-206ENST00000487010 CCNOP22674 350 aa10.4□□□□□ -0.75
COL3A1-206ENST00000487010 MDH2P40926 338 aaKnown RBP10.4□□□□□ -0.75
COL3A1-206ENST00000487010 SSTP61278 116 aa10.4□□□□□ -0.75
COL3A1-206ENST00000487010 SERF2P84101 59 aa10.4□□□□□ -0.75
COL3A1-206ENST00000487010 LRRC75BQ2VPJ9 315 aa10.4□□□□□ -0.75
COL3A1-206ENST00000487010 NRN1LQ496H8 165 aa10.4□□□□□ -0.75
COL3A1-206ENST00000487010 WIPI1Q5MNZ9 446 aaPredicted RBP10.4□□□□□ -0.75
COL3A1-206ENST00000487010 ZNF880Q6PDB4 577 aa10.4□□□□□ -0.75
COL3A1-206ENST00000487010 HAPLN4Q86UW8 402 aa10.4□□□□□ -0.75
COL3A1-206ENST00000487010 RNASE11Q8TAA1 199 aaKnown RBP10.4□□□□□ -0.75
COL3A1-206ENST00000487010 SAP25Q8TEE9 199 aa10.4□□□□□ -0.75
COL3A1-206ENST00000487010 ABHD3Q8WU67 409 aa10.4□□□□□ -0.75
COL3A1-206ENST00000487010 LSM10Q969L4 123 aaKnown RBP10.4□□□□□ -0.75
COL3A1-206ENST00000487010 SNX22Q96L94 193 aa10.4□□□□□ -0.75
COL3A1-206ENST00000487010 CACNG5Q9UF02 275 aa10.4□□□□□ -0.75
COL3A1-206ENST00000487010 ERRFI1Q9UJM3 462 aaPredicted RBP10.4□□□□□ -0.75
COL3A1-206ENST00000487010 TNRC6AQ8NDV7 1962 aaKnown RBP10.39□□□□□ -0.75
COL3A1-206ENST00000487010 CEBPZOSA8MTT3 80 aa10.39□□□□□ -0.75
COL3A1-206ENST00000487010 ZNHIT1O43257 154 aa10.39□□□□□ -0.75
COL3A1-206ENST00000487010 SYNGR1O43759 233 aa10.39□□□□□ -0.75
COL3A1-206ENST00000487010 IFNA10P01566 189 aa10.39□□□□□ -0.75
COL3A1-206ENST00000487010 IGKV1-39P01597 117 aa10.39□□□□□ -0.75
COL3A1-206ENST00000487010 IGKV1D-39P04432 117 aa10.39□□□□□ -0.75
COL3A1-206ENST00000487010 IAPPP10997 89 aa10.39□□□□□ -0.75
COL3A1-206ENST00000487010 DDTP30046 118 aa10.39□□□□□ -0.75
COL3A1-206ENST00000487010 TMEM41BQ5BJD5 291 aa10.39□□□□□ -0.75
COL3A1-206ENST00000487010 WDR25Q64LD2 544 aaPredicted RBP10.39□□□□□ -0.75
COL3A1-206ENST00000487010 MRPL21Q7Z2W9 205 aaKnown RBP10.39□□□□□ -0.75
COL3A1-206ENST00000487010 OR10A7Q8NGE5 316 aa10.39□□□□□ -0.75
COL3A1-206ENST00000487010 OR5R1Q8NH85 324 aa10.39□□□□□ -0.75
COL3A1-206ENST00000487010 FSCN3Q9NQT6 498 aa10.39□□□□□ -0.75
COL3A1-206ENST00000487010 CNTRLQ7Z7A1 2325 aa10.39□□□□□ -0.75
COL3A1-206ENST00000487010 SMCO3A2RU48 225 aa10.38□□□□□ -0.75
COL3A1-206ENST00000487010 LRRC3CA6NJW4 275 aa10.38□□□□□ -0.75
COL3A1-206ENST00000487010 CD300LBA8K4G0 201 aa10.38□□□□□ -0.75
COL3A1-206ENST00000487010 TSTD3H0UI37 97 aa10.38□□□□□ -0.75
COL3A1-206ENST00000487010 TRAPPC6AO75865 159 aa10.38□□□□□ -0.75
COL3A1-206ENST00000487010 IFNA1P01562 189 aa10.38□□□□□ -0.75
COL3A1-206ENST00000487010 CCL2P13500 99 aa10.38□□□□□ -0.75
COL3A1-206ENST00000487010 IL2RGP31785 369 aa10.38□□□□□ -0.75
COL3A1-206ENST00000487010 HBG1P69891 147 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms