RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-215ENST00000485550 DUX3Q96PT4 197 aa8.34□□□□□ -1.07
HMGN1-215ENST00000485550 CHCHD3Q9NX63 227 aaKnown RBP8.34□□□□□ -1.07
HMGN1-215ENST00000485550 IL36GQ9NZH8 169 aa8.34□□□□□ -1.07
HMGN1-215ENST00000485550 TRAV8-7A0A075B6U6 113 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 ZNF736B4DX44 427 aaPredicted RBP8.33□□□□□ -1.08
HMGN1-215ENST00000485550 SLC31A2O15432 143 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 FGF16O43320 207 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 MT-ND4P03905 459 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 GTF2F2P13984 249 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 IGFBP3P17936 291 aaPredicted RBP8.33□□□□□ -1.08
HMGN1-215ENST00000485550 MYL12AP19105 171 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 VHLP40337 213 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 THBS3P49746 956 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 PAX5Q02548 391 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 NHLRC3Q5JS37 347 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 NKAPLQ5M9Q1 402 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 GLIPR1L1Q6UWM5 242 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 SLC16A12Q6ZSM3 486 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 LCNL1Q6ZST4 164 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 PRR18Q8N4B5 295 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 JAGN1Q8N5M9 183 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 OR51D1Q8NGF3 324 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 OR10V1Q8NGI7 309 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 OR4K15Q8NH41 348 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 MUC7Q8TAX7 377 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 TMEM80Q96HE8 168 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 LYSTQ99698 3801 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 ASCL2Q99929 193 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 PAK1IP1Q9NWT1 392 aaPredicted RBP8.33□□□□□ -1.08
HMGN1-215ENST00000485550 GFOD1Q9NXC2 390 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 TRAPPC2LQ9UL33 140 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 DIMT1Q9UNQ2 313 aaKnown RBP8.33□□□□□ -1.08
HMGN1-215ENST00000485550 EXOSC1Q9Y3B2 195 aaKnown RBP8.33□□□□□ -1.08
HMGN1-215ENST00000485550 SORL1Q92673 2214 aa8.33□□□□□ -1.08
HMGN1-215ENST00000485550 DNAH7Q8WXX0 4024 aa8.32□□□□□ -1.08
HMGN1-215ENST00000485550 TRBV5-5A0A0J9YX44 114 aa8.32□□□□□ -1.08
HMGN1-215ENST00000485550 AIPO00170 330 aa8.32□□□□□ -1.08
HMGN1-215ENST00000485550 ZNF780AO75290 641 aaPredicted RBP8.32□□□□□ -1.08
HMGN1-215ENST00000485550 IGHG2P01859 326 aa8.32□□□□□ -1.08
HMGN1-215ENST00000485550 MAS1P04201 325 aa8.32□□□□□ -1.08
HMGN1-215ENST00000485550 RAB25P57735 213 aa8.32□□□□□ -1.08
HMGN1-215ENST00000485550 RPS11P62280 158 aaKnown RBP eCLIP8.32□□□□□ -1.08
HMGN1-215ENST00000485550 SLC35B1P78383 322 aa8.32□□□□□ -1.08
HMGN1-215ENST00000485550 ZNF816Q0VGE8 651 aaPredicted RBP8.32□□□□□ -1.08
HMGN1-215ENST00000485550 DCTN2Q13561 401 aaKnown RBP8.32□□□□□ -1.08
HMGN1-215ENST00000485550 EBI3Q14213 229 aa8.32□□□□□ -1.08
HMGN1-215ENST00000485550 MPV17LQ2QL34 196 aa8.32□□□□□ -1.08
HMGN1-215ENST00000485550 Q499Y3 187 aa8.32□□□□□ -1.08
HMGN1-215ENST00000485550 XP32Q5T750 250 aa8.32□□□□□ -1.08
HMGN1-215ENST00000485550 SYT6Q5T7P8 510 aaPredicted RBP8.32□□□□□ -1.08
HMGN1-215ENST00000485550 DMKNQ6E0U4 476 aaPredicted RBP8.32□□□□□ -1.08
HMGN1-215ENST00000485550 ZNF497Q6ZNH5 498 aa8.32□□□□□ -1.08
HMGN1-215ENST00000485550 C5orf24Q7Z6I8 188 aa8.32□□□□□ -1.08
HMGN1-215ENST00000485550 FOXRED2Q8IWF2 684 aa8.32□□□□□ -1.08
HMGN1-215ENST00000485550 STPG2Q8N412 459 aa8.32□□□□□ -1.08
HMGN1-215ENST00000485550 STX19Q8N4C7 294 aa8.32□□□□□ -1.08
HMGN1-215ENST00000485550 KLHL30-AS1Q8NEE0 82 aa8.32□□□□□ -1.08
HMGN1-215ENST00000485550 GGHQ92820 318 aa8.32□□□□□ -1.08
HMGN1-215ENST00000485550 OR14A2Q96R54 314 aa8.32□□□□□ -1.08
HMGN1-215ENST00000485550 BANF2Q9H503 90 aa8.32□□□□□ -1.08
HMGN1-215ENST00000485550 IFT22Q9H7X7 185 aa8.32□□□□□ -1.08
HMGN1-215ENST00000485550 ETAA1Q9NY74 926 aa8.32□□□□□ -1.08
HMGN1-215ENST00000485550 GNG12Q9UBI6 72 aa8.32□□□□□ -1.08
HMGN1-215ENST00000485550 CKLFQ9UBR5 152 aa8.32□□□□□ -1.08
HMGN1-215ENST00000485550 MRPS28Q9Y2Q9 187 aaKnown RBP8.32□□□□□ -1.08
HMGN1-215ENST00000485550 KIAA2026Q5HYC2 2103 aa8.32□□□□□ -1.08
HMGN1-215ENST00000485550 LCE6AA0A183 80 aa8.31□□□□□ -1.08
HMGN1-215ENST00000485550 IRGMA1A4Y4 181 aa8.31□□□□□ -1.08
HMGN1-215ENST00000485550 UBE2QL1A1L167 161 aa8.31□□□□□ -1.08
HMGN1-215ENST00000485550 C12orf77C9JDV5 145 aa8.31□□□□□ -1.08
HMGN1-215ENST00000485550 MCRIP1C9JLW8 97 aa8.31□□□□□ -1.08
HMGN1-215ENST00000485550 EBAG9O00559 213 aa8.31□□□□□ -1.08
HMGN1-215ENST00000485550 ORC5O43913 435 aa8.31□□□□□ -1.08
HMGN1-215ENST00000485550 RPLP1P05386 114 aaKnown RBP8.31□□□□□ -1.08
HMGN1-215ENST00000485550 GPR12P47775 334 aa8.31□□□□□ -1.08
HMGN1-215ENST00000485550 ZNF134P52741 427 aa8.31□□□□□ -1.08
HMGN1-215ENST00000485550 ST3GAL4Q11206 333 aa8.31□□□□□ -1.08
HMGN1-215ENST00000485550 YIF1BQ5BJH7 314 aa8.31□□□□□ -1.08
HMGN1-215ENST00000485550 AWAT2Q6E213 333 aa8.31□□□□□ -1.08
HMGN1-215ENST00000485550 RAB12Q6IQ22 244 aa8.31□□□□□ -1.08
HMGN1-215ENST00000485550 LINC00596Q86U02 117 aa8.31□□□□□ -1.08
HMGN1-215ENST00000485550 LINC00311Q8N616 119 aa8.31□□□□□ -1.08
HMGN1-215ENST00000485550 Q8N9W7 124 aa8.31□□□□□ -1.08
HMGN1-215ENST00000485550 OR52M1Q8NGK5 317 aa8.31□□□□□ -1.08
HMGN1-215ENST00000485550 OR2T10Q8NGZ9 312 aa8.31□□□□□ -1.08
HMGN1-215ENST00000485550 OR1L1Q8NH94 360 aa8.31□□□□□ -1.08
HMGN1-215ENST00000485550 RTN4IP1Q8WWV3 396 aaPredicted RBP8.31□□□□□ -1.08
HMGN1-215ENST00000485550 PGLYRP3Q96LB9 341 aa8.31□□□□□ -1.08
HMGN1-215ENST00000485550 RDH12Q96NR8 316 aa8.31□□□□□ -1.08
HMGN1-215ENST00000485550 GPR61Q9BZJ8 451 aa8.31□□□□□ -1.08
HMGN1-215ENST00000485550 SELENOIQ9C0D9 397 aa8.31□□□□□ -1.08
HMGN1-215ENST00000485550 ZFP57Q9NU63 452 aa8.31□□□□□ -1.08
HMGN1-215ENST00000485550 PEX16Q9Y5Y5 336 aa8.31□□□□□ -1.08
HMGN1-215ENST00000485550 TRBV5-7A0A0A0MS05 114 aa8.3□□□□□ -1.08
HMGN1-215ENST00000485550 AP4M1O00189 453 aa8.3□□□□□ -1.08
HMGN1-215ENST00000485550 SPINT2O43291 252 aa8.3□□□□□ -1.08
HMGN1-215ENST00000485550 GPX5O75715 221 aa8.3□□□□□ -1.08
HMGN1-215ENST00000485550 CRTAPO75718 401 aaPredicted RBP8.3□□□□□ -1.08
HMGN1-215ENST00000485550 HBZP02008 142 aa8.3□□□□□ -1.08
HMGN1-215ENST00000485550 RCC1P18754 421 aaPredicted RBP8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms