RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 CREB3L1Q96BA8 519 aa12.54□□□□□ -0.4
HMGA1-206ENST00000478214 FAM3DQ96BQ1 224 aa12.54□□□□□ -0.4
HMGA1-206ENST00000478214 LPAR5Q9H1C0 372 aa12.54□□□□□ -0.4
HMGA1-206ENST00000478214 IGHV3-43A0A0B4J1X8 118 aa12.53□□□□□ -0.4
HMGA1-206ENST00000478214 A0A1W2PPE3 182 aa12.53□□□□□ -0.4
HMGA1-206ENST00000478214 SDCBPO00560 298 aaPredicted RBP12.53□□□□□ -0.4
HMGA1-206ENST00000478214 PDCD5O14737 125 aa12.53□□□□□ -0.4
HMGA1-206ENST00000478214 IGHV3-43DP0DP04 118 aa12.53□□□□□ -0.4
HMGA1-206ENST00000478214 GALP22466 123 aa12.53□□□□□ -0.4
HMGA1-206ENST00000478214 MYL9P24844 172 aa12.53□□□□□ -0.4
HMGA1-206ENST00000478214 BLVRBP30043 206 aaPredicted RBP12.53□□□□□ -0.4
HMGA1-206ENST00000478214 CEACAM3P40198 252 aa12.53□□□□□ -0.4
HMGA1-206ENST00000478214 LOXL3P58215 753 aa12.53□□□□□ -0.4
HMGA1-206ENST00000478214 PROK1P58294 105 aa12.53□□□□□ -0.4
HMGA1-206ENST00000478214 C2orf76Q3KRA6 126 aa12.53□□□□□ -0.4
HMGA1-206ENST00000478214 C6orf183Q5T699 404 aa12.53□□□□□ -0.4
HMGA1-206ENST00000478214 SLC16A12Q6ZSM3 486 aa12.53□□□□□ -0.4
HMGA1-206ENST00000478214 OR52M1Q8NGK5 317 aa12.53□□□□□ -0.4
HMGA1-206ENST00000478214 OR1L1Q8NH94 360 aa12.53□□□□□ -0.4
HMGA1-206ENST00000478214 MRPL30Q8TCC3 161 aaKnown RBP12.53□□□□□ -0.4
HMGA1-206ENST00000478214 FAAP24Q9BTP7 215 aa12.53□□□□□ -0.4
HMGA1-206ENST00000478214 GFOD1Q9NXC2 390 aa12.53□□□□□ -0.4
HMGA1-206ENST00000478214 PITPNC1Q9UKF7 332 aa12.53□□□□□ -0.4
HMGA1-206ENST00000478214 SIGLEC9Q9Y336 463 aa12.53□□□□□ -0.4
HMGA1-206ENST00000478214 SOCS1O15524 211 aa12.52□□□□□ -0.41
HMGA1-206ENST00000478214 SPINT2O43291 252 aa12.52□□□□□ -0.41
HMGA1-206ENST00000478214 HBZP02008 142 aa12.52□□□□□ -0.41
HMGA1-206ENST00000478214 KRTAP10-3P60369 221 aa12.52□□□□□ -0.41
HMGA1-206ENST00000478214 PLA2G7Q13093 441 aa12.52□□□□□ -0.41
HMGA1-206ENST00000478214 NEDD8Q15843 81 aa12.52□□□□□ -0.41
HMGA1-206ENST00000478214 FBLN7Q53RD9 439 aa12.52□□□□□ -0.41
HMGA1-206ENST00000478214 C5orf24Q7Z6I8 188 aa12.52□□□□□ -0.41
HMGA1-206ENST00000478214 PRR18Q8N4B5 295 aa12.52□□□□□ -0.41
HMGA1-206ENST00000478214 FAM89BQ8N5H3 189 aa12.52□□□□□ -0.41
HMGA1-206ENST00000478214 OR4C13Q8NGP0 309 aa12.52□□□□□ -0.41
HMGA1-206ENST00000478214 URM1Q9BTM9 101 aaKnown RBP12.52□□□□□ -0.41
HMGA1-206ENST00000478214 NPFFR1Q9GZQ6 430 aa12.52□□□□□ -0.41
HMGA1-206ENST00000478214 TAF9BQ9HBM6 251 aa12.52□□□□□ -0.41
HMGA1-206ENST00000478214 MBNL3Q9NUK0 354 aaKnown RBP12.52□□□□□ -0.41
HMGA1-206ENST00000478214 TXNL4BQ9NX01 149 aaKnown RBP12.52□□□□□ -0.41
HMGA1-206ENST00000478214 STEAP1Q9UHE8 339 aa12.52□□□□□ -0.41
HMGA1-206ENST00000478214 STUB1Q9UNE7 303 aa12.52□□□□□ -0.41
HMGA1-206ENST00000478214 AMMECR1Q9Y4X0 333 aaPredicted RBP12.52□□□□□ -0.41
HMGA1-206ENST00000478214 SMIM30A4D0T7 59 aa12.51□□□□□ -0.41
HMGA1-206ENST00000478214 IFITM5A6NNB3 132 aa12.51□□□□□ -0.41
HMGA1-206ENST00000478214 LDLRAD4O15165 306 aa12.51□□□□□ -0.41
HMGA1-206ENST00000478214 RAB3BP20337 219 aa12.51□□□□□ -0.41
HMGA1-206ENST00000478214 FGF9P31371 208 aaPredicted RBP12.51□□□□□ -0.41
HMGA1-206ENST00000478214 BRS3P32247 399 aa12.51□□□□□ -0.41
HMGA1-206ENST00000478214 KIR2DS4P43632 304 aa12.51□□□□□ -0.41
HMGA1-206ENST00000478214 MADCAM1Q13477 382 aa12.51□□□□□ -0.41
HMGA1-206ENST00000478214 DIAPH2-AS1Q14236 149 aa12.51□□□□□ -0.41
HMGA1-206ENST00000478214 TRAT1Q6PIZ9 186 aa12.51□□□□□ -0.41
HMGA1-206ENST00000478214 NR2C2APQ86WQ0 139 aa12.51□□□□□ -0.41
HMGA1-206ENST00000478214 OR10X1Q8NGY0 326 aa12.51□□□□□ -0.41
HMGA1-206ENST00000478214 TOMM40LQ969M1 308 aa12.51□□□□□ -0.41
HMGA1-206ENST00000478214 RPEQ96AT9 228 aa12.51□□□□□ -0.41
HMGA1-206ENST00000478214 OR51E2Q9H255 320 aa12.51□□□□□ -0.41
HMGA1-206ENST00000478214 RANBP3Q9H6Z4 567 aaPredicted RBP12.51□□□□□ -0.41
HMGA1-206ENST00000478214 PLEKHJ1Q9NW61 149 aa12.51□□□□□ -0.41
HMGA1-206ENST00000478214 FBLN5Q9UBX5 448 aa12.51□□□□□ -0.41
HMGA1-206ENST00000478214 TMEM272A0A1B0GTI8 110 aa12.5□□□□□ -0.41
HMGA1-206ENST00000478214 FOXI3A8MTJ6 420 aaPredicted RBP12.5□□□□□ -0.41
HMGA1-206ENST00000478214 OOSP1A8MZH6 123 aa12.5□□□□□ -0.41
HMGA1-206ENST00000478214 MNDAP41218 407 aa12.5□□□□□ -0.41
HMGA1-206ENST00000478214 VEGFCP49767 419 aa12.5□□□□□ -0.41
HMGA1-206ENST00000478214 ARHGDIBP52566 201 aa12.5□□□□□ -0.41
HMGA1-206ENST00000478214 TMEM50BP56557 158 aa12.5□□□□□ -0.41
HMGA1-206ENST00000478214 CCDC144NLQ6NUI1 221 aa12.5□□□□□ -0.41
HMGA1-206ENST00000478214 OR10V1Q8NGI7 309 aa12.5□□□□□ -0.41
HMGA1-206ENST00000478214 SGMS2Q8NHU3 365 aa12.5□□□□□ -0.41
HMGA1-206ENST00000478214 ZNF702PQ9H963 129 aa12.5□□□□□ -0.41
HMGA1-206ENST00000478214 RAB9BQ9NP90 201 aa12.5□□□□□ -0.41
HMGA1-206ENST00000478214 KCNIP1Q9NZI2 227 aa12.5□□□□□ -0.41
HMGA1-206ENST00000478214 GNG12Q9UBI6 72 aa12.5□□□□□ -0.41
HMGA1-206ENST00000478214 SSR3Q9UNL2 185 aa12.5□□□□□ -0.41
HMGA1-206ENST00000478214 A0A0B4J203 849 aa12.49□□□□□ -0.41
HMGA1-206ENST00000478214 A0A1W2PPI3 338 aa12.49□□□□□ -0.41
HMGA1-206ENST00000478214 TIMM23O14925 209 aa12.49□□□□□ -0.41
HMGA1-206ENST00000478214 SLC31A2O15432 143 aa12.49□□□□□ -0.41
HMGA1-206ENST00000478214 NAPSAO96009 420 aa12.49□□□□□ -0.41
HMGA1-206ENST00000478214 RANBP1P43487 201 aa12.49□□□□□ -0.41
HMGA1-206ENST00000478214 EFNB2P52799 333 aa12.49□□□□□ -0.41
HMGA1-206ENST00000478214 TMEM30BQ3MIR4 351 aa12.49□□□□□ -0.41
HMGA1-206ENST00000478214 Q6ZPA2 131 aa12.49□□□□□ -0.41
HMGA1-206ENST00000478214 ZNF554Q86TJ5 538 aa12.49□□□□□ -0.41
HMGA1-206ENST00000478214 LINC00311Q8N616 119 aa12.49□□□□□ -0.41
HMGA1-206ENST00000478214 C8orf31Q8N9H6 132 aa12.49□□□□□ -0.41
HMGA1-206ENST00000478214 OR2T6Q8NHC8 308 aa12.49□□□□□ -0.41
HMGA1-206ENST00000478214 ARHGAP5-AS1Q96IT6 56 aa12.49□□□□□ -0.41
HMGA1-206ENST00000478214 CITED1Q99966 193 aa12.49□□□□□ -0.41
HMGA1-206ENST00000478214 OCSTAMPQ9BR26 566 aa12.49□□□□□ -0.41
HMGA1-206ENST00000478214 HDHD3Q9BSH5 251 aaPredicted RBP12.49□□□□□ -0.41
HMGA1-206ENST00000478214 CHMP1AQ9HD42 196 aaPredicted RBP12.49□□□□□ -0.41
HMGA1-206ENST00000478214 AK3Q9UIJ7 227 aa12.49□□□□□ -0.41
HMGA1-206ENST00000478214 RAB22AQ9UL26 194 aa12.49□□□□□ -0.41
HMGA1-206ENST00000478214 NBEAL1Q6ZS30 2694 aa12.48□□□□□ -0.41
HMGA1-206ENST00000478214 SLC2A2P11168 524 aaPredicted RBP12.48□□□□□ -0.41
HMGA1-206ENST00000478214 GADD45AP24522 165 aa12.48□□□□□ -0.41
HMGA1-206ENST00000478214 REG1BP48304 166 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms