RNA–Protein interactions for RNA: ENST00000463147.1

USH2A-203, Transcript of usherin, humanhuman

TSL 2

Gene USH2A, Length 618 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-203ENST00000463147 THOC2Q8NI27 1593 aaKnown RBP2.36□□□□□ -2.03
USH2A-203ENST00000463147 RTEL1-TNFRSF6BF6WH68 1400 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 BLMP54132 1417 aaPredicted RBP2.36□□□□□ -2.03
USH2A-203ENST00000463147 IGHV1-45A0A0A0MS14 117 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 IGHV3-43A0A0B4J1X8 118 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 C7orf66A4D0T2 115 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 CXCR6O00574 342 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 BET1O15155 118 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 KCNK2O95069 426 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 SOX14O95416 240 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 TRGV3P03979 118 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 KRT7P08729 469 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 CXCL2P19875 107 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 CXCL3P19876 107 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 ELK4P28324 431 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 EVI2BP34910 448 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 CBX5P45973 191 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 LINC00315P59091 139 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 FUT5Q11128 374 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 KPRPQ5T749 579 aaPredicted RBP2.36□□□□□ -2.03
USH2A-203ENST00000463147 DAZ4Q86SG3 579 aaKnown RBP2.36□□□□□ -2.03
USH2A-203ENST00000463147 OR4C13Q8NGP0 309 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 RNF133Q8WVZ7 376 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 RTN4IP1Q8WWV3 396 aaPredicted RBP2.36□□□□□ -2.03
USH2A-203ENST00000463147 ASB13Q8WXK3 278 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 VSIRQ9H7M9 311 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 DAZ1Q9NQZ3 744 aaKnown RBP2.36□□□□□ -2.03
USH2A-203ENST00000463147 FAM206AQ9NX38 181 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 USE1Q9NZ43 259 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 ZNF835Q9Y2P0 537 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 POLR3HQ9Y535 204 aaPredicted RBP2.36□□□□□ -2.03
USH2A-203ENST00000463147 OR51B4Q9Y5P0 310 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 CCDC18Q5T9S5 1454 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 SCAF11Q99590 1463 aaKnown RBP2.36□□□□□ -2.03
USH2A-203ENST00000463147 CECR2Q9BXF3 1484 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 KIF21AQ7Z4S6 1674 aa2.36□□□□□ -2.03
USH2A-203ENST00000463147 ATAD5Q96QE3 1844 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 FMN1Q68DA7 1419 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 NAV1Q8NEY1 1877 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 ARAP1Q96P48 1450 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 IGKV1OR2-108A0A075B7D4 117 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 A8MWP4 228 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 RPL36A-HNRNPH2H7BZ11 118 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 NRASP01111 189 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 HRASP01112 189 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 KRASP01116 189 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 OCM2P0CE71 109 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 CELP19835 753 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 ZNF83P51522 516 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 MRPS15P82914 257 aaKnown RBP2.35□□□□□ -2.03
USH2A-203ENST00000463147 GTF2BQ00403 316 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 C1DQ13901 141 aaKnown RBP2.35□□□□□ -2.03
USH2A-203ENST00000463147 PAFAH1B3Q15102 231 aaKnown RBP2.35□□□□□ -2.03
USH2A-203ENST00000463147 PDZD11Q5EBL8 140 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 CENPWQ5EE01 88 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 SPNS3Q6ZMD2 512 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 DCXRQ7Z4W1 244 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 TMEM144Q7Z5S9 345 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 NT5DC3Q86UY8 548 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 OR9I1Q8NGQ6 314 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 RBPMSQ93062 196 aaKnown RBP2.35□□□□□ -2.03
USH2A-203ENST00000463147 PTH2Q96A98 100 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 SMIM12Q96EX1 92 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 SPIN2AQ99865 258 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 B9D2Q9BPU9 175 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 SPIN2BQ9BPZ2 258 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 TRIM4Q9C037 500 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 IL37Q9NZH6 218 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 SBDSQ9Y3A5 250 aaKnown RBP eCLIP2.35□□□□□ -2.03
USH2A-203ENST00000463147 KDM5BQ9UGL1 1544 aa2.35□□□□□ -2.03
USH2A-203ENST00000463147 NKTRP30414 1462 aaKnown RBP2.34□□□□□ -2.03
USH2A-203ENST00000463147 IGKV1-12A0A0C4DH73 117 aa2.34□□□□□ -2.03
USH2A-203ENST00000463147 LRCOL1A6NCL2 159 aa2.34□□□□□ -2.03
USH2A-203ENST00000463147 IGLL5B9A064 214 aa2.34□□□□□ -2.03
USH2A-203ENST00000463147 MFNGO00587 321 aa2.34□□□□□ -2.03
USH2A-203ENST00000463147 MAGEB4O15481 346 aaPredicted RBP2.34□□□□□ -2.03
USH2A-203ENST00000463147 ZW10O43264 779 aa2.34□□□□□ -2.03
USH2A-203ENST00000463147 TGOLN2O43493 480 aa2.34□□□□□ -2.03
USH2A-203ENST00000463147 IGKV1D-33P01593 117 aa2.34□□□□□ -2.03
USH2A-203ENST00000463147 IGKV1-33P01594 117 aa2.34□□□□□ -2.03
USH2A-203ENST00000463147 IGKV1D-12P01611 117 aa2.34□□□□□ -2.03
USH2A-203ENST00000463147 HLA-DRAP01903 254 aa2.34□□□□□ -2.03
USH2A-203ENST00000463147 IL4P05112 153 aa2.34□□□□□ -2.03
USH2A-203ENST00000463147 ATP5G1P05496 136 aa2.34□□□□□ -2.03
USH2A-203ENST00000463147 ZNF7P17097 686 aaPredicted RBP2.34□□□□□ -2.03
USH2A-203ENST00000463147 HSPA13P48723 471 aa2.34□□□□□ -2.03
USH2A-203ENST00000463147 INPP1P49441 399 aa2.34□□□□□ -2.03
USH2A-203ENST00000463147 SULT1A2P50226 295 aa2.34□□□□□ -2.03
USH2A-203ENST00000463147 NKX2-5P52952 324 aaPredicted RBP2.34□□□□□ -2.03
USH2A-203ENST00000463147 CASP8Q14790 479 aa2.34□□□□□ -2.03
USH2A-203ENST00000463147 TTMPQ5BVD1 217 aa2.34□□□□□ -2.03
USH2A-203ENST00000463147 C16orf47Q6ZP98 133 aaPredicted RBP2.34□□□□□ -2.03
USH2A-203ENST00000463147 TCF23Q7RTU1 214 aa2.34□□□□□ -2.03
USH2A-203ENST00000463147 DOLPP1Q86YN1 238 aa2.34□□□□□ -2.03
USH2A-203ENST00000463147 AMN1Q8IY45 258 aa2.34□□□□□ -2.03
USH2A-203ENST00000463147 Q8N402 240 aa2.34□□□□□ -2.03
USH2A-203ENST00000463147 TMEM75Q8N9X5 138 aa2.34□□□□□ -2.03
USH2A-203ENST00000463147 OR8A1Q8NGG7 326 aa2.34□□□□□ -2.03
USH2A-203ENST00000463147 OR4A5Q8NH83 315 aa2.34□□□□□ -2.03
USH2A-203ENST00000463147 KLF14Q8TD94 323 aaPredicted RBP2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms