RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 OR4F17Q8NGA8 305 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 OR5AU1Q8NGC0 362 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 OR10X1Q8NGY0 326 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 CCDC107Q8WV48 283 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 SGCDQ92629 289 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 OR4F4Q96R69 305 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 ANKRD60Q9BZ19 345 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 SELENOIQ9C0D9 397 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 CST11Q9H112 138 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 BANF2Q9H503 90 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 DUSP21Q9H596 190 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 RAB9BQ9NP90 201 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 ETAA1Q9NY74 926 aa9.58□□□□□ -0.88
USP40-210ENST00000454354 IGHV1-3A0A0C4DH29 117 aa9.57□□□□□ -0.88
USP40-210ENST00000454354 A0A1W2PPE3 182 aa9.57□□□□□ -0.88
USP40-210ENST00000454354 H0YHG0 523 aa9.57□□□□□ -0.88
USP40-210ENST00000454354 FGF16O43320 207 aa9.57□□□□□ -0.88
USP40-210ENST00000454354 LPLP06858 475 aa9.57□□□□□ -0.88
USP40-210ENST00000454354 UCHL1P09936 223 aa9.57□□□□□ -0.88
USP40-210ENST00000454354 TMEM11P17152 192 aa9.57□□□□□ -0.88
USP40-210ENST00000454354 FUT3P21217 361 aa9.57□□□□□ -0.88
USP40-210ENST00000454354 ZNF137PP52743 207 aa9.57□□□□□ -0.88
USP40-210ENST00000454354 EBI3Q14213 229 aa9.57□□□□□ -0.88
USP40-210ENST00000454354 MED22Q15528 200 aa9.57□□□□□ -0.88
USP40-210ENST00000454354 BEAN1Q3B7T3 259 aa9.57□□□□□ -0.88
USP40-210ENST00000454354 TCTEX1D4Q5JR98 221 aa9.57□□□□□ -0.88
USP40-210ENST00000454354 C1orf100Q5SVJ3 147 aa9.57□□□□□ -0.88
USP40-210ENST00000454354 FAM27D1Q5T7N8 215 aa9.57□□□□□ -0.88
USP40-210ENST00000454354 SYT6Q5T7P8 510 aaPredicted RBP9.57□□□□□ -0.88
USP40-210ENST00000454354 SAMD5Q5TGI4 173 aa9.57□□□□□ -0.88
USP40-210ENST00000454354 ZNF554Q86TJ5 538 aa9.57□□□□□ -0.88
USP40-210ENST00000454354 IZUMO1Q8IYV9 350 aa9.57□□□□□ -0.88
USP40-210ENST00000454354 ZNF439Q8NDP4 499 aa9.57□□□□□ -0.88
USP40-210ENST00000454354 ST6GALNAC6Q969X2 333 aa9.57□□□□□ -0.88
USP40-210ENST00000454354 R3HDM4Q96D70 268 aa9.57□□□□□ -0.88
USP40-210ENST00000454354 TMED9Q9BVK6 235 aa9.57□□□□□ -0.88
USP40-210ENST00000454354 ISYNA1Q9NPH2 558 aa9.57□□□□□ -0.88
USP40-210ENST00000454354 MBNL3Q9NUK0 354 aaKnown RBP9.57□□□□□ -0.88
USP40-210ENST00000454354 TPRKBQ9Y3C4 175 aa9.57□□□□□ -0.88
USP40-210ENST00000454354 PEX16Q9Y5Y5 336 aa9.57□□□□□ -0.88
USP40-210ENST00000454354 IGHV3-43A0A0B4J1X8 118 aa9.56□□□□□ -0.88
USP40-210ENST00000454354 SH2D7A6NKC9 451 aaPredicted RBP9.56□□□□□ -0.88
USP40-210ENST00000454354 G3V4G9 280 aa9.56□□□□□ -0.88
USP40-210ENST00000454354 CCRL2O00421 344 aa9.56□□□□□ -0.88
USP40-210ENST00000454354 SPINT2O43291 252 aa9.56□□□□□ -0.88
USP40-210ENST00000454354 PDCD6O75340 191 aa9.56□□□□□ -0.88
USP40-210ENST00000454354 IGKV1D-33P01593 117 aa9.56□□□□□ -0.88
USP40-210ENST00000454354 IGKV1-33P01594 117 aa9.56□□□□□ -0.88
USP40-210ENST00000454354 GAPDHP04406 335 aaKnown RBP9.56□□□□□ -0.88
USP40-210ENST00000454354 IGHV3-43DP0DP04 118 aa9.56□□□□□ -0.88
USP40-210ENST00000454354 VSIG8P0DPA2 414 aa9.56□□□□□ -0.88
USP40-210ENST00000454354 IL3RAP26951 378 aa9.56□□□□□ -0.88
USP40-210ENST00000454354 TPBGQ13641 420 aa9.56□□□□□ -0.88
USP40-210ENST00000454354 RBM48Q5RL73 367 aaKnown RBP9.56□□□□□ -0.88
USP40-210ENST00000454354 GLT8D1Q68CQ7 371 aa9.56□□□□□ -0.88
USP40-210ENST00000454354 FAM53AQ6NSI3 398 aaPredicted RBP9.56□□□□□ -0.88
USP40-210ENST00000454354 SLC25A48Q6ZT89 311 aaKnown RBP9.56□□□□□ -0.88
USP40-210ENST00000454354 CENPVQ7Z7K6 275 aaPredicted RBP9.56□□□□□ -0.88
USP40-210ENST00000454354 C1QL4Q86Z23 238 aa9.56□□□□□ -0.88
USP40-210ENST00000454354 Q8N6K4 173 aa9.56□□□□□ -0.88
USP40-210ENST00000454354 C5orf56Q8N8D9 126 aa9.56□□□□□ -0.88
USP40-210ENST00000454354 OR4K15Q8NH41 348 aa9.56□□□□□ -0.88
USP40-210ENST00000454354 UBALD1Q8TB05 177 aa9.56□□□□□ -0.88
USP40-210ENST00000454354 UFD1Q92890 307 aa9.56□□□□□ -0.88
USP40-210ENST00000454354 TRAPPC2LQ9UL33 140 aa9.56□□□□□ -0.88
USP40-210ENST00000454354 SLC22A1O15245 554 aa9.55□□□□□ -0.88
USP40-210ENST00000454354 SLC31A2O15432 143 aa9.55□□□□□ -0.88
USP40-210ENST00000454354 TXNL1O43396 289 aa9.55□□□□□ -0.88
USP40-210ENST00000454354 RGS10O43665 173 aa9.55□□□□□ -0.88
USP40-210ENST00000454354 HBZP02008 142 aa9.55□□□□□ -0.88
USP40-210ENST00000454354 RCC1P18754 421 aaPredicted RBP9.55□□□□□ -0.88
USP40-210ENST00000454354 SRMP19623 302 aa9.55□□□□□ -0.88
USP40-210ENST00000454354 CHATP28329 748 aa9.55□□□□□ -0.88
USP40-210ENST00000454354 VHLP40337 213 aa9.55□□□□□ -0.88
USP40-210ENST00000454354 RPS27AP62979 156 aaKnown RBP9.55□□□□□ -0.88
USP40-210ENST00000454354 HES1Q14469 280 aa9.55□□□□□ -0.88
USP40-210ENST00000454354 HSD17B12Q53GQ0 312 aa9.55□□□□□ -0.88
USP40-210ENST00000454354 LIPKQ5VXJ0 399 aa9.55□□□□□ -0.88
USP40-210ENST00000454354 CEACAM19Q7Z692 300 aa9.55□□□□□ -0.88
USP40-210ENST00000454354 OR4X2Q8NGF9 303 aa9.55□□□□□ -0.88
USP40-210ENST00000454354 OR1L1Q8NH94 360 aa9.55□□□□□ -0.88
USP40-210ENST00000454354 MRPL30Q8TCC3 161 aaKnown RBP9.55□□□□□ -0.88
USP40-210ENST00000454354 RTN4IP1Q8WWV3 396 aaPredicted RBP9.55□□□□□ -0.88
USP40-210ENST00000454354 FAM46BQ96A09 425 aa9.55□□□□□ -0.88
USP40-210ENST00000454354 CYYR1Q96J86 154 aa9.55□□□□□ -0.88
USP40-210ENST00000454354 TMEM59Q9BXS4 323 aa9.55□□□□□ -0.88
USP40-210ENST00000454354 VCX3BQ9H321 246 aa9.55□□□□□ -0.88
USP40-210ENST00000454354 TSSC4Q9Y5U2 329 aaPredicted RBP9.55□□□□□ -0.88
USP40-210ENST00000454354 UBE2QL1A1L167 161 aa9.54□□□□□ -0.88
USP40-210ENST00000454354 TMEM14DPA8MWL7 114 aa9.54□□□□□ -0.88
USP40-210ENST00000454354 MPIG6BO95866 241 aa9.54□□□□□ -0.88
USP40-210ENST00000454354 CRHBPP24387 322 aa9.54□□□□□ -0.88
USP40-210ENST00000454354 PSMA1P25786 263 aaKnown RBP9.54□□□□□ -0.88
USP40-210ENST00000454354 HTR2CP28335 458 aa9.54□□□□□ -0.88
USP40-210ENST00000454354 CD1BP29016 333 aa9.54□□□□□ -0.88
USP40-210ENST00000454354 REG1BP48304 166 aa9.54□□□□□ -0.88
USP40-210ENST00000454354 HSPA13P48723 471 aa9.54□□□□□ -0.88
USP40-210ENST00000454354 ZNF134P52741 427 aa9.54□□□□□ -0.88
USP40-210ENST00000454354 QRFPP83859 136 aa9.54□□□□□ -0.88
USP40-210ENST00000454354 UNC119Q13432 240 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms