RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 OR4F17Q8NGA8 305 aa15.42■□□□□ 0.06
USP40-207ENST00000450940 OR10X1Q8NGY0 326 aa15.42■□□□□ 0.06
USP40-207ENST00000450940 SGCDQ92629 289 aa15.42■□□□□ 0.06
USP40-207ENST00000450940 ST6GALNAC6Q969X2 333 aa15.42■□□□□ 0.06
USP40-207ENST00000450940 OR4F4Q96R69 305 aa15.42■□□□□ 0.06
USP40-207ENST00000450940 SELENOIQ9C0D9 397 aa15.42■□□□□ 0.06
USP40-207ENST00000450940 DUSP21Q9H596 190 aa15.42■□□□□ 0.06
USP40-207ENST00000450940 ETAA1Q9NY74 926 aa15.42■□□□□ 0.06
USP40-207ENST00000450940 MOB4Q9Y3A3 225 aa15.42■□□□□ 0.06
USP40-207ENST00000450940 PEX16Q9Y5Y5 336 aa15.42■□□□□ 0.06
USP40-207ENST00000450940 NOTCH3Q9UM47 2321 aa15.42■□□□□ 0.06
USP40-207ENST00000450940 C12orf77C9JDV5 145 aa15.41■□□□□ 0.06
USP40-207ENST00000450940 SDCBPO00560 298 aaPredicted RBP15.41■□□□□ 0.06
USP40-207ENST00000450940 GAPDHP04406 335 aaKnown RBP15.41■□□□□ 0.06
USP40-207ENST00000450940 GABPB1Q06547 395 aaPredicted RBP15.41■□□□□ 0.06
USP40-207ENST00000450940 BEAN1Q3B7T3 259 aa15.41■□□□□ 0.06
USP40-207ENST00000450940 FAM27D1Q5T7N8 215 aa15.41■□□□□ 0.06
USP40-207ENST00000450940 SYT6Q5T7P8 510 aaPredicted RBP15.41■□□□□ 0.06
USP40-207ENST00000450940 C1QL4Q86Z23 238 aa15.41■□□□□ 0.06
USP40-207ENST00000450940 RAB9BQ9NP90 201 aa15.41■□□□□ 0.06
USP40-207ENST00000450940 G3V4G9 280 aa15.4■□□□□ 0.06
USP40-207ENST00000450940 HSD17B6O14756 317 aa15.4■□□□□ 0.06
USP40-207ENST00000450940 FGF16O43320 207 aa15.4■□□□□ 0.06
USP40-207ENST00000450940 CRTAPO75718 401 aaPredicted RBP15.4■□□□□ 0.06
USP40-207ENST00000450940 UBBP0CG47 229 aa15.4■□□□□ 0.06
USP40-207ENST00000450940 MYF6P23409 242 aa15.4■□□□□ 0.06
USP40-207ENST00000450940 C6orf183Q5T699 404 aa15.4■□□□□ 0.06
USP40-207ENST00000450940 FAM53AQ6NSI3 398 aaPredicted RBP15.4■□□□□ 0.06
USP40-207ENST00000450940 TRAT1Q6PIZ9 186 aa15.4■□□□□ 0.06
USP40-207ENST00000450940 C5orf56Q8N8D9 126 aa15.4■□□□□ 0.06
USP40-207ENST00000450940 ZNF439Q8NDP4 499 aa15.4■□□□□ 0.06
USP40-207ENST00000450940 R3HDM4Q96D70 268 aa15.4■□□□□ 0.06
USP40-207ENST00000450940 MBNL3Q9NUK0 354 aaKnown RBP15.4■□□□□ 0.06
USP40-207ENST00000450940 TRAPPC2LQ9UL33 140 aa15.4■□□□□ 0.06
USP40-207ENST00000450940 IGHV1-3A0A0C4DH29 117 aa15.39■□□□□ 0.05
USP40-207ENST00000450940 SH2D7A6NKC9 451 aaPredicted RBP15.39■□□□□ 0.05
USP40-207ENST00000450940 CCRL2O00421 344 aa15.39■□□□□ 0.05
USP40-207ENST00000450940 SPINT2O43291 252 aa15.39■□□□□ 0.05
USP40-207ENST00000450940 PDCD6O75340 191 aa15.39■□□□□ 0.05
USP40-207ENST00000450940 UCHL1P09936 223 aa15.39■□□□□ 0.05
USP40-207ENST00000450940 TMEM11P17152 192 aa15.39■□□□□ 0.05
USP40-207ENST00000450940 VHLP40337 213 aa15.39■□□□□ 0.05
USP40-207ENST00000450940 ZNF137PP52743 207 aa15.39■□□□□ 0.05
USP40-207ENST00000450940 TPBGQ13641 420 aa15.39■□□□□ 0.05
USP40-207ENST00000450940 SLC25A48Q6ZT89 311 aaKnown RBP15.39■□□□□ 0.05
USP40-207ENST00000450940 ZNF554Q86TJ5 538 aa15.39■□□□□ 0.05
USP40-207ENST00000450940 OR4K15Q8NH41 348 aa15.39■□□□□ 0.05
USP40-207ENST00000450940 UBALD1Q8TB05 177 aa15.39■□□□□ 0.05
USP40-207ENST00000450940 TMED9Q9BVK6 235 aa15.39■□□□□ 0.05
USP40-207ENST00000450940 ANKRD60Q9BZ19 345 aa15.39■□□□□ 0.05
USP40-207ENST00000450940 CST11Q9H112 138 aa15.39■□□□□ 0.05
USP40-207ENST00000450940 TPRKBQ9Y3C4 175 aa15.39■□□□□ 0.05
USP40-207ENST00000450940 IGHV3-43A0A0B4J1X8 118 aa15.38■□□□□ 0.05
USP40-207ENST00000450940 IGKV1D-33P01593 117 aa15.38■□□□□ 0.05
USP40-207ENST00000450940 IGKV1-33P01594 117 aa15.38■□□□□ 0.05
USP40-207ENST00000450940 HBZP02008 142 aa15.38■□□□□ 0.05
USP40-207ENST00000450940 IGHV3-43DP0DP04 118 aa15.38■□□□□ 0.05
USP40-207ENST00000450940 RCC1P18754 421 aaPredicted RBP15.38■□□□□ 0.05
USP40-207ENST00000450940 SRMP19623 302 aa15.38■□□□□ 0.05
USP40-207ENST00000450940 MED22Q15528 200 aa15.38■□□□□ 0.05
USP40-207ENST00000450940 STEAP3Q658P3 488 aa15.38■□□□□ 0.05
USP40-207ENST00000450940 GLT8D1Q68CQ7 371 aa15.38■□□□□ 0.05
USP40-207ENST00000450940 CEACAM19Q7Z692 300 aa15.38■□□□□ 0.05
USP40-207ENST00000450940 IZUMO1Q8IYV9 350 aa15.38■□□□□ 0.05
USP40-207ENST00000450940 Q8N6K4 173 aa15.38■□□□□ 0.05
USP40-207ENST00000450940 WFDC9Q8NEX5 89 aa15.38■□□□□ 0.05
USP40-207ENST00000450940 ISYNA1Q9NPH2 558 aa15.38■□□□□ 0.05
USP40-207ENST00000450940 TSSC4Q9Y5U2 329 aaPredicted RBP15.38■□□□□ 0.05
USP40-207ENST00000450940 VSIG8P0DPA2 414 aa15.37■□□□□ 0.05
USP40-207ENST00000450940 IL3RAP26951 378 aa15.37■□□□□ 0.05
USP40-207ENST00000450940 ZNF134P52741 427 aa15.37■□□□□ 0.05
USP40-207ENST00000450940 HES1Q14469 280 aa15.37■□□□□ 0.05
USP40-207ENST00000450940 CT45A1Q5HYN5 189 aa15.37■□□□□ 0.05
USP40-207ENST00000450940 C10orf99Q6UWK7 81 aa15.37■□□□□ 0.05
USP40-207ENST00000450940 MOB3BQ86TA1 216 aa15.37■□□□□ 0.05
USP40-207ENST00000450940 OR1L1Q8NH94 360 aa15.37■□□□□ 0.05
USP40-207ENST00000450940 CT45A3Q8NHU0 189 aa15.37■□□□□ 0.05
USP40-207ENST00000450940 RTN4IP1Q8WWV3 396 aaPredicted RBP15.37■□□□□ 0.05
USP40-207ENST00000450940 FAM46BQ96A09 425 aa15.37■□□□□ 0.05
USP40-207ENST00000450940 CYYR1Q96J86 154 aa15.37■□□□□ 0.05
USP40-207ENST00000450940 EAF1Q96JC9 268 aaPredicted RBP15.37■□□□□ 0.05
USP40-207ENST00000450940 TCRBV4S1A1TA0A5B7 111 aa15.36■□□□□ 0.05
USP40-207ENST00000450940 UBE2QL1A1L167 161 aa15.36■□□□□ 0.05
USP40-207ENST00000450940 SLC22A1O15245 554 aa15.36■□□□□ 0.05
USP40-207ENST00000450940 SLC31A2O15432 143 aa15.36■□□□□ 0.05
USP40-207ENST00000450940 IGHG2P01859 326 aa15.36■□□□□ 0.05
USP40-207ENST00000450940 CHATP28329 748 aa15.36■□□□□ 0.05
USP40-207ENST00000450940 CD1BP29016 333 aa15.36■□□□□ 0.05
USP40-207ENST00000450940 REG1BP48304 166 aa15.36■□□□□ 0.05
USP40-207ENST00000450940 RPS27AP62979 156 aaKnown RBP15.36■□□□□ 0.05
USP40-207ENST00000450940 QRFPP83859 136 aa15.36■□□□□ 0.05
USP40-207ENST00000450940 HNF4GQ14541 408 aa15.36■□□□□ 0.05
USP40-207ENST00000450940 HSD17B12Q53GQ0 312 aa15.36■□□□□ 0.05
USP40-207ENST00000450940 C9orf152Q5JTZ5 239 aa15.36■□□□□ 0.05
USP40-207ENST00000450940 RBM48Q5RL73 367 aaKnown RBP15.36■□□□□ 0.05
USP40-207ENST00000450940 LIPKQ5VXJ0 399 aa15.36■□□□□ 0.05
USP40-207ENST00000450940 OR4X2Q8NGF9 303 aa15.36■□□□□ 0.05
USP40-207ENST00000450940 KCNG3Q8TAE7 436 aa15.36■□□□□ 0.05
USP40-207ENST00000450940 MRPL30Q8TCC3 161 aaKnown RBP15.36■□□□□ 0.05
USP40-207ENST00000450940 TAF9BQ9HBM6 251 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms