RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 FAM89BQ8N5H3 189 aa15.08■□□□□ 0
SHH-203ENST00000435425 OR10A7Q8NGE5 316 aa15.08■□□□□ 0
SHH-203ENST00000435425 OR1L1Q8NH94 360 aa15.08■□□□□ 0
SHH-203ENST00000435425 SETD6Q8TBK2 473 aa15.08■□□□□ 0
SHH-203ENST00000435425 YIPF6Q96EC8 236 aa15.08■□□□□ 0
SHH-203ENST00000435425 LINC00574Q9H8X3 128 aa15.08■□□□□ 0
SHH-203ENST00000435425 KCNIP1Q9NZI2 227 aa15.08■□□□□ 0
SHH-203ENST00000435425 C1RLQ9NZP8 487 aa15.08■□□□□ 0
SHH-203ENST00000435425 DPM3Q9P2X0 92 aa15.08■□□□□ 0
SHH-203ENST00000435425 FBLN5Q9UBX5 448 aa15.08■□□□□ 0
SHH-203ENST00000435425 DAPK2Q9UIK4 370 aa15.08■□□□□ 0
SHH-203ENST00000435425 PSG11Q9UQ72 335 aa15.08■□□□□ 0
SHH-203ENST00000435425 LEUTXA8MZ59 168 aa15.07■□□□□ 0
SHH-203ENST00000435425 BUB1B-PAK6H3BSN5 160 aa15.07■□□□□ 0
SHH-203ENST00000435425 J3QR06 171 aa15.07■□□□□ 0
SHH-203ENST00000435425 SPINT2O43291 252 aa15.07■□□□□ 0
SHH-203ENST00000435425 IGLV1-47P01700 117 aa15.07■□□□□ 0
SHH-203ENST00000435425 HBZP02008 142 aa15.07■□□□□ 0
SHH-203ENST00000435425 TGFBR1P36897 503 aa15.07■□□□□ 0
SHH-203ENST00000435425 LSM3P62310 102 aaKnown RBP15.07■□□□□ 0
SHH-203ENST00000435425 AWAT1Q58HT5 328 aa15.07■□□□□ 0
SHH-203ENST00000435425 Q6ZTK2 550 aa15.07■□□□□ 0
SHH-203ENST00000435425 GAPTQ8N292 157 aa15.07■□□□□ 0
SHH-203ENST00000435425 OR56B1Q8NGI3 324 aa15.07■□□□□ 0
SHH-203ENST00000435425 ARHGAP5-AS1Q96IT6 56 aa15.07■□□□□ 0
SHH-203ENST00000435425 PECRQ9BY49 303 aa15.07■□□□□ 0
SHH-203ENST00000435425 TAF9BQ9HBM6 251 aa15.07■□□□□ 0
SHH-203ENST00000435425 AK3Q9UIJ7 227 aa15.07■□□□□ 0
SHH-203ENST00000435425 AIREO43918 545 aa15.06■□□□□ 0
SHH-203ENST00000435425 TMEM50BP56557 158 aa15.06■□□□□ 0
SHH-203ENST00000435425 AANATQ16613 207 aa15.06■□□□□ 0
SHH-203ENST00000435425 TIMM50Q3ZCQ8 353 aa15.06■□□□□ 0
SHH-203ENST00000435425 DHRS7BQ6IAN0 325 aaPredicted RBP15.06■□□□□ 0
SHH-203ENST00000435425 TRAT1Q6PIZ9 186 aa15.06■□□□□ 0
SHH-203ENST00000435425 OR10V1Q8NGI7 309 aa15.06■□□□□ 0
SHH-203ENST00000435425 PIFOQ8TCI5 191 aa15.06■□□□□ 0
SHH-203ENST00000435425 HDHD3Q9BSH5 251 aaPredicted RBP15.06■□□□□ 0
SHH-203ENST00000435425 MMP28Q9H239 520 aa15.06■□□□□ 0
SHH-203ENST00000435425 RAB9BQ9NP90 201 aa15.06■□□□□ 0
SHH-203ENST00000435425 GFOD1Q9NXC2 390 aa15.06■□□□□ 0
SHH-203ENST00000435425 A0A075B6Q4 140 aa15.05■□□□□ -0
SHH-203ENST00000435425 TRIM64CA6NLI5 447 aa15.05■□□□□ -0
SHH-203ENST00000435425 FOXI3A8MTJ6 420 aaPredicted RBP15.05■□□□□ -0
SHH-203ENST00000435425 SNRPBP14678 240 aaKnown RBP15.05■□□□□ -0
SHH-203ENST00000435425 MDKP21741 143 aaPredicted RBP15.05■□□□□ -0
SHH-203ENST00000435425 CFPP27918 469 aa15.05■□□□□ -0
SHH-203ENST00000435425 CEACAM3P40198 252 aa15.05■□□□□ -0
SHH-203ENST00000435425 RAG2P55895 527 aa15.05■□□□□ -0
SHH-203ENST00000435425 RELBQ01201 579 aa15.05■□□□□ -0
SHH-203ENST00000435425 MOGAT2Q3SYC2 334 aa15.05■□□□□ -0
SHH-203ENST00000435425 TPTE2P1Q5T6R2 138 aa15.05■□□□□ -0
SHH-203ENST00000435425 SFXN4Q6P4A7 337 aa15.05■□□□□ -0
SHH-203ENST00000435425 C3orf56Q8N813 242 aa15.05■□□□□ -0
SHH-203ENST00000435425 CREB3L1Q96BA8 519 aa15.05■□□□□ -0
SHH-203ENST00000435425 ATG5Q9H1Y0 275 aa15.05■□□□□ -0
SHH-203ENST00000435425 MBNL3Q9NUK0 354 aaKnown RBP15.05■□□□□ -0
SHH-203ENST00000435425 GNG12Q9UBI6 72 aa15.05■□□□□ -0
SHH-203ENST00000435425 AMMECR1Q9Y4X0 333 aaPredicted RBP15.05■□□□□ -0
SHH-203ENST00000435425 VGLL3A8MV65 326 aa15.04■□□□□ -0
SHH-203ENST00000435425 F2RL2O00254 374 aa15.04■□□□□ -0
SHH-203ENST00000435425 SMIM18P0DKX4 95 aa15.04■□□□□ -0
SHH-203ENST00000435425 RAB6AP20340 208 aa15.04■□□□□ -0
SHH-203ENST00000435425 CD24P25063 80 aa15.04■□□□□ -0
SHH-203ENST00000435425 COMPP49747 757 aaPredicted RBP15.04■□□□□ -0
SHH-203ENST00000435425 LOXL3P58215 753 aa15.04■□□□□ -0
SHH-203ENST00000435425 PLAC9Q5JTB6 97 aa15.04■□□□□ -0
SHH-203ENST00000435425 IDNKQ5T6J7 187 aa15.04■□□□□ -0
SHH-203ENST00000435425 OLFML2AQ68BL7 652 aa15.04■□□□□ -0
SHH-203ENST00000435425 SLC16A12Q6ZSM3 486 aa15.04■□□□□ -0
SHH-203ENST00000435425 TMEM219Q86XT9 240 aa15.04■□□□□ -0
SHH-203ENST00000435425 OR52L2PQ8NGH6 319 aa15.04■□□□□ -0
SHH-203ENST00000435425 OR52M1Q8NGK5 317 aa15.04■□□□□ -0
SHH-203ENST00000435425 OR10X1Q8NGY0 326 aa15.04■□□□□ -0
SHH-203ENST00000435425 RPEQ96AT9 228 aa15.04■□□□□ -0
SHH-203ENST00000435425 HSF4Q9ULV5 492 aa15.04■□□□□ -0
SHH-203ENST00000435425 METTL21EPA6NDL7 271 aa15.03■□□□□ -0
SHH-203ENST00000435425 LY6LH3BQJ8 138 aa15.03■□□□□ -0
SHH-203ENST00000435425 RPL15P61313 204 aaKnown RBP15.03■□□□□ -0
SHH-203ENST00000435425 OR10R2Q8NGX6 335 aa15.03■□□□□ -0
SHH-203ENST00000435425 OR4F5Q8NH21 305 aa15.03■□□□□ -0
SHH-203ENST00000435425 TOMM40LQ969M1 308 aa15.03■□□□□ -0
SHH-203ENST00000435425 RAB3CQ96E17 227 aa15.03■□□□□ -0
SHH-203ENST00000435425 CMSS1Q9BQ75 279 aaKnown RBP15.03■□□□□ -0
SHH-203ENST00000435425 OR2S2Q9NQN1 319 aa15.03■□□□□ -0
SHH-203ENST00000435425 TCF19Q9Y242 345 aa15.03■□□□□ -0
SHH-203ENST00000435425 SLC31A2O15432 143 aa15.02■□□□□ -0
SHH-203ENST00000435425 NAPSAO96009 420 aa15.02■□□□□ -0
SHH-203ENST00000435425 GNB3P16520 340 aa15.02■□□□□ -0
SHH-203ENST00000435425 BRS3P32247 399 aa15.02■□□□□ -0
SHH-203ENST00000435425 ARHGDIBP52566 201 aa15.02■□□□□ -0
SHH-203ENST00000435425 DIAPH2-AS1Q14236 149 aa15.02■□□□□ -0
SHH-203ENST00000435425 CCBE1Q6UXH8 406 aaPredicted RBP15.02■□□□□ -0
SHH-203ENST00000435425 Q6ZPA2 131 aa15.02■□□□□ -0
SHH-203ENST00000435425 Q6ZSV7 163 aa15.02■□□□□ -0
SHH-203ENST00000435425 LGALS14Q8TCE9 139 aa15.02■□□□□ -0
SHH-203ENST00000435425 IL1F10Q8WWZ1 152 aa15.02■□□□□ -0
SHH-203ENST00000435425 FUNDC2Q9BWH2 189 aa15.02■□□□□ -0
SHH-203ENST00000435425 RIMS4Q9H426 269 aaPredicted RBP15.02■□□□□ -0
SHH-203ENST00000435425 BEX1Q9HBH7 125 aa15.02■□□□□ -0
SHH-203ENST00000435425 ABRACLQ9P1F3 81 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms