RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 ATG4DQ86TL0 474 aaPredicted RBP8.53□□□□□ -1.04
USP54-205ENST00000424265 OR51L1Q8NGJ5 315 aa8.53□□□□□ -1.04
USP54-205ENST00000424265 WFDC12Q8WWY7 111 aa8.53□□□□□ -1.04
USP54-205ENST00000424265 PLA2G12AQ9BZM1 189 aa8.53□□□□□ -1.04
USP54-205ENST00000424265 DEFB127Q9H1M4 99 aa8.53□□□□□ -1.04
USP54-205ENST00000424265 TMEM106BQ9NUM4 274 aa8.53□□□□□ -1.04
USP54-205ENST00000424265 PLA2G3Q9NZ20 509 aa8.53□□□□□ -1.04
USP54-205ENST00000424265 PEF1Q9UBV8 284 aaKnown RBP8.53□□□□□ -1.04
USP54-205ENST00000424265 SIRT4Q9Y6E7 314 aaPredicted RBP8.53□□□□□ -1.04
USP54-205ENST00000424265 NINQ8N4C6 2090 aa8.53□□□□□ -1.04
USP54-205ENST00000424265 ZFP92A6NM28 416 aa8.53□□□□□ -1.04
USP54-205ENST00000424265 HLA-HP01893 362 aa8.53□□□□□ -1.04
USP54-205ENST00000424265 CLDN6P56747 220 aa8.53□□□□□ -1.04
USP54-205ENST00000424265 NFAM1Q8NET5 270 aaPredicted RBP8.53□□□□□ -1.04
USP54-205ENST00000424265 TMEM170AQ8WVE7 144 aa8.53□□□□□ -1.04
USP54-205ENST00000424265 OR51B2Q9Y5P1 312 aa8.53□□□□□ -1.04
USP54-205ENST00000424265 ARHGEF17Q96PE2 2063 aaPredicted RBP8.53□□□□□ -1.04
USP54-205ENST00000424265 LOC100289279A0A1B0GTE1 492 aa8.53□□□□□ -1.04
USP54-205ENST00000424265 ZC3H12DA2A288 527 aaKnown RBP8.53□□□□□ -1.04
USP54-205ENST00000424265 C2orf72A6NCS6 295 aa8.53□□□□□ -1.04
USP54-205ENST00000424265 OR4C45A6NMZ5 311 aa8.53□□□□□ -1.04
USP54-205ENST00000424265 H3BSH0 61 aa8.53□□□□□ -1.04
USP54-205ENST00000424265 CLDN15P56746 228 aa8.53□□□□□ -1.04
USP54-205ENST00000424265 ZNF684Q5T5D7 378 aa8.53□□□□□ -1.04
USP54-205ENST00000424265 SLC25A42Q86VD7 318 aa8.53□□□□□ -1.04
USP54-205ENST00000424265 ZDHHC22Q8N966 263 aa8.53□□□□□ -1.04
USP54-205ENST00000424265 APCDD1LQ8NCL9 501 aa8.53□□□□□ -1.04
USP54-205ENST00000424265 ABHD6Q9BV23 337 aa8.53□□□□□ -1.04
USP54-205ENST00000424265 GNG13Q9P2W3 67 aa8.53□□□□□ -1.04
USP54-205ENST00000424265 LRP5LA4QPB2 252 aa8.52□□□□□ -1.04
USP54-205ENST00000424265 GAPDHP04406 335 aaKnown RBP8.52□□□□□ -1.04
USP54-205ENST00000424265 TMEM33P57088 247 aa8.52□□□□□ -1.04
USP54-205ENST00000424265 RPL18Q07020 188 aaKnown RBP8.52□□□□□ -1.04
USP54-205ENST00000424265 MSMO1Q15800 293 aa8.52□□□□□ -1.04
USP54-205ENST00000424265 IAH1Q2TAA2 248 aaPredicted RBP8.52□□□□□ -1.04
USP54-205ENST00000424265 CNEP1R1Q8N9A8 125 aa8.52□□□□□ -1.04
USP54-205ENST00000424265 OR52M1Q8NGK5 317 aa8.52□□□□□ -1.04
USP54-205ENST00000424265 RBMXL1Q96E39 390 aaKnown RBP8.52□□□□□ -1.04
USP54-205ENST00000424265 MEGF11A6BM72 1044 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 C9orf135Q5VTT2 229 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 WDR25Q64LD2 544 aaPredicted RBP8.52□□□□□ -1.05
USP54-205ENST00000424265 PARLQ9H300 379 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 C1orf198Q9H425 327 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 WDR76Q9H967 626 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 RAB18Q9NP72 206 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 SLC5A6Q9Y289 635 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 MSRB2Q9Y3D2 182 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 ODAMA1E959 279 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 SCGB2A1O75556 95 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 MMP23AO75900 390 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 IFNA5P01569 189 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 MMP9P14780 707 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 ZNF154Q13106 437 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 Q6ZVH6 145 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 OR2T10Q8NGZ9 312 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 SMIM19Q96E16 107 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 PROCRQ9UNN8 238 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 CXCL13O43927 109 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 APOA2P02652 100 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 DANCRP0C864 163 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 CCL3P10147 92 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 AESQ08117 197 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 PRSS53Q2L4Q9 553 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 NICN1Q9BSH3 213 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 OR10A2Q9H208 303 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 C12orf49Q9H741 205 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 SLC45A2Q9UMX9 530 aa8.52□□□□□ -1.05
USP54-205ENST00000424265 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.51□□□□□ -1.05
USP54-205ENST00000424265 CHRM2P08172 466 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 HOXB9P17482 250 aaPredicted RBP8.51□□□□□ -1.05
USP54-205ENST00000424265 USF1P22415 310 aaPredicted RBP8.51□□□□□ -1.05
USP54-205ENST00000424265 SLC25A1P53007 311 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 STUMQ69YW2 141 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 SHISA2Q6UWI4 295 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 GFRALQ6UXV0 394 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 MRAP2Q96G30 205 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 ATP5SQ99766 215 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 SCNM1Q9BWG6 230 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 HINT3Q9NQE9 182 aaKnown RBP8.51□□□□□ -1.05
USP54-205ENST00000424265 AURKAIP1Q9NWT8 199 aaPredicted RBP8.51□□□□□ -1.05
USP54-205ENST00000424265 CGGBP1Q9UFW8 167 aaPredicted RBP8.51□□□□□ -1.05
USP54-205ENST00000424265 LRP12Q9Y561 859 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 GRB2P62993 217 aaKnown RBP8.51□□□□□ -1.05
USP54-205ENST00000424265 MYBPHQ13203 477 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 CD226Q15762 336 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 ACKR1Q16570 336 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 C16orf82Q7Z2V1 217 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 OR5AK2Q8NH90 309 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 PDCD1LG2Q9BQ51 273 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 PI4KAP42356 2102 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 SLC2A10O95528 541 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 HSPB1P04792 205 aaKnown RBP8.51□□□□□ -1.05
USP54-205ENST00000424265 ZNF266Q14584 549 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 TRAPPC6BQ86SZ2 158 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 GJC3Q8NFK1 279 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 OR51D1Q8NGF3 324 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 ZMYND19Q96E35 227 aaPredicted RBP8.51□□□□□ -1.05
USP54-205ENST00000424265 SLC25A44Q96H78 314 aaPredicted RBP8.51□□□□□ -1.05
USP54-205ENST00000424265 YAE1D1Q9NRH1 226 aa8.51□□□□□ -1.05
USP54-205ENST00000424265 COL4A3Q01955 1670 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms