RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 Q6ZPA2 131 aa15.19■□□□□ 0.02
SF3A1-202ENST00000411423 SLC16A12Q6ZSM3 486 aa15.19■□□□□ 0.02
SF3A1-202ENST00000411423 PRSS48Q7RTY5 328 aa15.19■□□□□ 0.02
SF3A1-202ENST00000411423 DRAM1Q8N682 238 aa15.19■□□□□ 0.02
SF3A1-202ENST00000411423 OR1L1Q8NH94 360 aa15.19■□□□□ 0.02
SF3A1-202ENST00000411423 CAPSLQ8WWF8 208 aa15.19■□□□□ 0.02
SF3A1-202ENST00000411423 CREB3L1Q96BA8 519 aa15.19■□□□□ 0.02
SF3A1-202ENST00000411423 NICN1Q9BSH3 213 aa15.19■□□□□ 0.02
SF3A1-202ENST00000411423 SPACA1Q9HBV2 294 aa15.19■□□□□ 0.02
SF3A1-202ENST00000411423 ISYNA1Q9NPH2 558 aa15.19■□□□□ 0.02
SF3A1-202ENST00000411423 A0A0A6YYD4 124 aa15.18■□□□□ 0.02
SF3A1-202ENST00000411423 SLC22A1O15245 554 aa15.18■□□□□ 0.02
SF3A1-202ENST00000411423 CSF1P09603 554 aa15.18■□□□□ 0.02
SF3A1-202ENST00000411423 CPEP16870 476 aa15.18■□□□□ 0.02
SF3A1-202ENST00000411423 FUT3P21217 361 aa15.18■□□□□ 0.02
SF3A1-202ENST00000411423 VDAC2P45880 294 aaPredicted RBP15.18■□□□□ 0.02
SF3A1-202ENST00000411423 REG1BP48304 166 aa15.18■□□□□ 0.02
SF3A1-202ENST00000411423 FABP5Q01469 135 aa15.18■□□□□ 0.02
SF3A1-202ENST00000411423 MLLT11Q13015 90 aaPredicted RBP15.18■□□□□ 0.02
SF3A1-202ENST00000411423 C2orf68Q2NKX9 166 aa15.18■□□□□ 0.02
SF3A1-202ENST00000411423 ABCA11PQ4W5N1 156 aa15.18■□□□□ 0.02
SF3A1-202ENST00000411423 C16orf82Q7Z2V1 217 aa15.18■□□□□ 0.02
SF3A1-202ENST00000411423 ZNF439Q8NDP4 499 aa15.18■□□□□ 0.02
SF3A1-202ENST00000411423 OR52M1Q8NGK5 317 aa15.18■□□□□ 0.02
SF3A1-202ENST00000411423 MRPL30Q8TCC3 161 aaKnown RBP15.18■□□□□ 0.02
SF3A1-202ENST00000411423 SULT4A1Q9BR01 284 aa15.18■□□□□ 0.02
SF3A1-202ENST00000411423 VCX3BQ9H321 246 aa15.18■□□□□ 0.02
SF3A1-202ENST00000411423 GHRLQ9UBU3 117 aa15.18■□□□□ 0.02
SF3A1-202ENST00000411423 TRAPPC2LQ9UL33 140 aa15.18■□□□□ 0.02
SF3A1-202ENST00000411423 AMMECR1Q9Y4X0 333 aaPredicted RBP15.18■□□□□ 0.02
SF3A1-202ENST00000411423 TMEM14DPA8MWL7 114 aa15.17■□□□□ 0.02
SF3A1-202ENST00000411423 PDCD6O75340 191 aa15.17■□□□□ 0.02
SF3A1-202ENST00000411423 FBXO24O75426 580 aa15.17■□□□□ 0.02
SF3A1-202ENST00000411423 LPLP06858 475 aa15.17■□□□□ 0.02
SF3A1-202ENST00000411423 CHATP28329 748 aa15.17■□□□□ 0.02
SF3A1-202ENST00000411423 HTR2CP28335 458 aa15.17■□□□□ 0.02
SF3A1-202ENST00000411423 ZNF134P52741 427 aa15.17■□□□□ 0.02
SF3A1-202ENST00000411423 DEFA6Q01524 100 aa15.17■□□□□ 0.02
SF3A1-202ENST00000411423 MADCAM1Q13477 382 aa15.17■□□□□ 0.02
SF3A1-202ENST00000411423 SSX1Q16384 188 aa15.17■□□□□ 0.02
SF3A1-202ENST00000411423 GLT8D1Q68CQ7 371 aa15.17■□□□□ 0.02
SF3A1-202ENST00000411423 CCDC144NLQ6NUI1 221 aa15.17■□□□□ 0.02
SF3A1-202ENST00000411423 C10orf99Q6UWK7 81 aa15.17■□□□□ 0.02
SF3A1-202ENST00000411423 LINC00311Q8N616 119 aa15.17■□□□□ 0.02
SF3A1-202ENST00000411423 OR10V1Q8NGI7 309 aa15.17■□□□□ 0.02
SF3A1-202ENST00000411423 ST6GALNAC6Q969X2 333 aa15.17■□□□□ 0.02
SF3A1-202ENST00000411423 MGLLQ99685 303 aa15.17■□□□□ 0.02
SF3A1-202ENST00000411423 CITED2Q99967 270 aaPredicted RBP15.17■□□□□ 0.02
SF3A1-202ENST00000411423 MBNL3Q9NUK0 354 aaKnown RBP15.17■□□□□ 0.02
SF3A1-202ENST00000411423 IGHV3-72A0A0B4J1Y9 119 aa15.16■□□□□ 0.02
SF3A1-202ENST00000411423 HSD17B6O14756 317 aa15.16■□□□□ 0.02
SF3A1-202ENST00000411423 HBZP02008 142 aa15.16■□□□□ 0.02
SF3A1-202ENST00000411423 MNDAP41218 407 aa15.16■□□□□ 0.02
SF3A1-202ENST00000411423 HSPA13P48723 471 aa15.16■□□□□ 0.02
SF3A1-202ENST00000411423 RPS27AP62979 156 aaKnown RBP15.16■□□□□ 0.02
SF3A1-202ENST00000411423 GNMTQ14749 295 aa15.16■□□□□ 0.02
SF3A1-202ENST00000411423 NSUN5P1Q3KNT7 163 aa15.16■□□□□ 0.02
SF3A1-202ENST00000411423 TCTEX1D4Q5JR98 221 aa15.16■□□□□ 0.02
SF3A1-202ENST00000411423 NKAPLQ5M9Q1 402 aa15.16■□□□□ 0.02
SF3A1-202ENST00000411423 THNSL2Q86YJ6 484 aa15.16■□□□□ 0.02
SF3A1-202ENST00000411423 PRR18Q8N4B5 295 aa15.16■□□□□ 0.02
SF3A1-202ENST00000411423 OR10X1Q8NGY0 326 aa15.16■□□□□ 0.02
SF3A1-202ENST00000411423 RAB26Q9ULW5 256 aa15.16■□□□□ 0.02
SF3A1-202ENST00000411423 AK6Q9Y3D8 172 aaKnown RBP15.16■□□□□ 0.02
SF3A1-202ENST00000411423 SHISA3A0PJX4 238 aa15.15■□□□□ 0.02
SF3A1-202ENST00000411423 GLAP06280 429 aa15.15■□□□□ 0.02
SF3A1-202ENST00000411423 UBBP0CG47 229 aa15.15■□□□□ 0.02
SF3A1-202ENST00000411423 RAB7AP51149 207 aa15.15■□□□□ 0.02
SF3A1-202ENST00000411423 ARHGDIBP52566 201 aa15.15■□□□□ 0.02
SF3A1-202ENST00000411423 ZNF816Q0VGE8 651 aaPredicted RBP15.15■□□□□ 0.02
SF3A1-202ENST00000411423 HNF4GQ14541 408 aa15.15■□□□□ 0.02
SF3A1-202ENST00000411423 P2RY14Q15391 338 aa15.15■□□□□ 0.02
SF3A1-202ENST00000411423 TBCEQ15813 527 aaPredicted RBP15.15■□□□□ 0.02
SF3A1-202ENST00000411423 CT45A1Q5HYN5 189 aa15.15■□□□□ 0.02
SF3A1-202ENST00000411423 C6orf201Q7Z4U5 140 aa15.15■□□□□ 0.02
SF3A1-202ENST00000411423 C1QL4Q86Z23 238 aa15.15■□□□□ 0.02
SF3A1-202ENST00000411423 DTX3Q8N9I9 347 aa15.15■□□□□ 0.02
SF3A1-202ENST00000411423 CT45A3Q8NHU0 189 aa15.15■□□□□ 0.02
SF3A1-202ENST00000411423 FAAP24Q9BTP7 215 aa15.15■□□□□ 0.02
SF3A1-202ENST00000411423 TM2D1Q9BX74 207 aa15.15■□□□□ 0.02
SF3A1-202ENST00000411423 CST11Q9H112 138 aa15.15■□□□□ 0.02
SF3A1-202ENST00000411423 IGHV1-3A0A0C4DH29 117 aa15.14■□□□□ 0.01
SF3A1-202ENST00000411423 CCRL2O00421 344 aa15.14■□□□□ 0.01
SF3A1-202ENST00000411423 IGKV1D-33P01593 117 aa15.14■□□□□ 0.01
SF3A1-202ENST00000411423 IGKV1-33P01594 117 aa15.14■□□□□ 0.01
SF3A1-202ENST00000411423 PLA2G7Q13093 441 aa15.14■□□□□ 0.01
SF3A1-202ENST00000411423 ARSJQ5FYB0 599 aaPredicted RBP15.14■□□□□ 0.01
SF3A1-202ENST00000411423 SLC25A48Q6ZT89 311 aaKnown RBP15.14■□□□□ 0.01
SF3A1-202ENST00000411423 OR8H3Q8N146 312 aa15.14■□□□□ 0.01
SF3A1-202ENST00000411423 C8orf31Q8N9H6 132 aa15.14■□□□□ 0.01
SF3A1-202ENST00000411423 OR52L2PQ8NGH6 319 aa15.14■□□□□ 0.01
SF3A1-202ENST00000411423 TMEM59Q9BXS4 323 aa15.14■□□□□ 0.01
SF3A1-202ENST00000411423 LPAR5Q9H1C0 372 aa15.14■□□□□ 0.01
SF3A1-202ENST00000411423 TAF9BQ9HBM6 251 aa15.14■□□□□ 0.01
SF3A1-202ENST00000411423 ACOT13Q9NPJ3 140 aa15.14■□□□□ 0.01
SF3A1-202ENST00000411423 MOB4Q9Y3A3 225 aa15.14■□□□□ 0.01
SF3A1-202ENST00000411423 PRKDCP78527 4128 aaKnown RBP15.14■□□□□ 0.01
SF3A1-202ENST00000411423 FOXI3A8MTJ6 420 aaPredicted RBP15.13■□□□□ 0.01
SF3A1-202ENST00000411423 ZNF736B4DX44 427 aaPredicted RBP15.13■□□□□ 0.01
SF3A1-202ENST00000411423 FAM106CPP0CH98 169 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms