RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 A0A0B4J2A0 478 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 TNFSF13O75888 250 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 IFNA21P01568 189 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 POLR2GP62487 172 aaKnown RBP eCLIP8.8□□□□□ -1
COL6A3-205ENST00000392004 UBE2V2Q15819 145 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 EIF5AL1Q6IS14 154 aaKnown RBP8.8□□□□□ -1
COL6A3-205ENST00000392004 SLC16A13Q7RTY0 426 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 BAP18Q8IXM2 172 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 TMED6Q8WW62 240 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 TMEM45BQ96B21 275 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 BARX1Q9HBU1 254 aaPredicted RBP8.8□□□□□ -1
COL6A3-205ENST00000392004 SHPKQ9UHJ6 478 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 COL12A1Q99715 3063 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 SMCO3A2RU48 225 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 NDUFS7O75251 213 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 F12P00748 615 aaPredicted RBP8.8□□□□□ -1
COL6A3-205ENST00000392004 SMIM6P0DI80 62 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 EIF5AP63241 154 aaKnown RBP8.8□□□□□ -1
COL6A3-205ENST00000392004 LY6G6FQ5SQ64 297 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 ATPAF1Q5TC12 328 aaPredicted RBP8.8□□□□□ -1
COL6A3-205ENST00000392004 LYG1Q8N1E2 194 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 LEAP2Q969E1 77 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 SUCNR1Q9BXA5 334 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 SMCO4Q9NRQ5 59 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 NCOA6Q14686 2063 aaPredicted RBP8.8□□□□□ -1
COL6A3-205ENST00000392004 TRGV10A0A0A0MS01 117 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 TRAV38-1A0A0B4J264 116 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 SLC17A2O00624 439 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 EIF3GO75821 320 aaKnown RBP eCLIP8.8□□□□□ -1
COL6A3-205ENST00000392004 ZNF14P17017 642 aaPredicted RBP8.8□□□□□ -1
COL6A3-205ENST00000392004 BPIFB3P59826 476 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 LCN2P80188 198 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 MOB3BQ86TA1 216 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 DMBX1Q8NFW5 382 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 OR8G5Q8NG78 346 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 OR10J5Q8NHC4 309 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 GPX8Q8TED1 209 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 ZNF251Q9BRH9 671 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 LINC00470Q9BZP3 86 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 NMNAT2Q9BZQ4 307 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 TLNRD1Q9H1K6 362 aa8.8□□□□□ -1
COL6A3-205ENST00000392004 NPBWR1P48145 328 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 CYCSP99999 105 aaKnown RBP8.79□□□□□ -1
COL6A3-205ENST00000392004 RHOUQ7L0Q8 258 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 LYG2Q86SG7 212 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 POM121L2Q96KW2 1035 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 RBM14Q96PK6 669 aaKnown RBP8.79□□□□□ -1
COL6A3-205ENST00000392004 SEC11CQ9BY50 192 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 MMP26Q9NRE1 261 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 TRBV5-5A0A0J9YX44 114 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 LINC00587B1AMM8 73 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 LILRA1O75019 489 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 CEACAM4O75871 244 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 FUT3P21217 361 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 RPUSD3Q6P087 351 aaKnown RBP8.79□□□□□ -1
COL6A3-205ENST00000392004 OR10S1Q8NGN2 331 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 ENY2Q9NPA8 101 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 UQCC1Q9NVA1 299 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 IL36RNQ9UBH0 155 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 CARHSP1Q9Y2V2 147 aaKnown RBP8.79□□□□□ -1
COL6A3-205ENST00000392004 A0A0A6YYH2 397 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 IGHV1-69-2A0A0G2JMI3 117 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 A6NJ64 397 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 OR5B21A6NL26 309 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 NCBP2LA6PVI3 153 aaKnown RBP8.79□□□□□ -1
COL6A3-205ENST00000392004 TGFAP01135 160 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 OPN1MWP04001 364 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 APELAP0DMC3 54 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 OPN1MW2P0DN77 364 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 OPN1MW3P0DN78 364 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 PSMB6P28072 239 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 RPL31P62899 125 aaKnown RBP8.79□□□□□ -1
COL6A3-205ENST00000392004 VAMP2P63027 116 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 PJVKQ0ZLH3 352 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 IL34Q6ZMJ4 242 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 MYOZ1Q9NP98 299 aaPredicted RBP8.79□□□□□ -1
COL6A3-205ENST00000392004 FAM206AQ9NX38 181 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 FOXD3Q9UJU5 478 aaPredicted RBP8.79□□□□□ -1
COL6A3-205ENST00000392004 CFAP47Q6ZTR5 3102 aa8.79□□□□□ -1
COL6A3-205ENST00000392004 ZZEF1O43149 2961 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 IGHV3-72A0A0B4J1Y9 119 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 LRP5LA4QPB2 252 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 DKK1O94907 266 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 FCGR2CP31995 323 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 WNT5AP41221 380 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 ARL6IP1Q15041 203 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 C14orf79Q96F83 325 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 DKK4Q9UBT3 224 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 RNF222A6NCQ9 220 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 ZNF503-AS2A6NEH8 195 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 TXNL1O43396 289 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 CNIH1O95406 144 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 HAND1O96004 215 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 S100PP25815 95 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 ZNF154Q13106 437 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 SPNS3Q6ZMD2 512 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 TCTEX1D2Q8WW35 142 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 CHST5Q9GZS9 411 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 PRORYQ9H606 182 aa8.78□□□□□ -1
COL6A3-205ENST00000392004 OPA3Q9H6K4 179 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms