RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 NUDT19A8MXV4 375 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 J3QT63 122 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 DEGS1O15121 323 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 SSSCA1O60232 199 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 SLC34A2O95436 690 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 FTH1P19P0C7X4 201 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 ZNF44P15621 663 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 OMGP23515 440 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 KIR2DS4P43632 304 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 KIR2DS1Q14954 304 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 TBC1D28Q2M2D7 210 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 Q6ZRM9 215 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 FAM185AQ8N0U4 392 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 TMEM178AQ8NBL3 297 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 IL1F10Q8WWZ1 152 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 GTF3AQ92664 365 aaKnown RBP11.32□□□□□ -0.6
CCDC3-202ENST00000378839 C20orf24Q9BUV8 137 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 MIOXQ9UGB7 285 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 ZNF318Q5VUA4 2279 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 IGKV1-39P01597 117 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 IGHG3P01860 377 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 IGKV1D-39P04432 117 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 PAX9P55771 341 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 EIF5AP63241 154 aaKnown RBP11.32□□□□□ -0.6
CCDC3-202ENST00000378839 HLA-DRB3P79483 266 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 MIDNQ504T8 468 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 PRR18Q8N4B5 295 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 C9orf106Q8NAJ2 232 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 GSN-AS1Q9NRJ2 163 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 CACFD1Q9UGQ2 172 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 A0A1B0GV50 99 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 CLEC18AA5D8T8 446 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 KIR2DL2P43627 348 aaPredicted RBP11.32□□□□□ -0.6
CCDC3-202ENST00000378839 LINC00596Q86U02 117 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 OR2C3Q8N628 320 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 CLEC18CQ8NCF0 446 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 CABLES2Q9BTV7 478 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 PLK3Q9H4B4 646 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 OR2W1Q9Y3N9 320 aa11.32□□□□□ -0.6
CCDC3-202ENST00000378839 KIAA1324LA8MWY0 1029 aaPredicted RBP11.31□□□□□ -0.6
CCDC3-202ENST00000378839 H2AFB1P0C5Y9 115 aa11.31□□□□□ -0.6
CCDC3-202ENST00000378839 PSG2P11465 335 aa11.31□□□□□ -0.6
CCDC3-202ENST00000378839 DAOP14920 347 aa11.31□□□□□ -0.6
CCDC3-202ENST00000378839 NKX2-1P43699 371 aaPredicted RBP11.31□□□□□ -0.6
CCDC3-202ENST00000378839 ID3Q02535 119 aa11.31□□□□□ -0.6
CCDC3-202ENST00000378839 EIF5AL1Q6IS14 154 aaKnown RBP11.31□□□□□ -0.6
CCDC3-202ENST00000378839 P4HA3Q7Z4N8 544 aa11.31□□□□□ -0.6
CCDC3-202ENST00000378839 CXorf67Q86X51 503 aaPredicted RBP11.31□□□□□ -0.6
CCDC3-202ENST00000378839 C11orf53Q8IXP5 236 aa11.31□□□□□ -0.6
CCDC3-202ENST00000378839 SPAG16Q8N0X2 631 aa11.31□□□□□ -0.6
CCDC3-202ENST00000378839 WDR31Q8NA23 367 aa11.31□□□□□ -0.6
CCDC3-202ENST00000378839 OR51H1Q8NH63 302 aa11.31□□□□□ -0.6
CCDC3-202ENST00000378839 NANOS1Q8WY41 292 aaKnown RBP11.31□□□□□ -0.6
CCDC3-202ENST00000378839 ISOC2Q96AB3 205 aa11.31□□□□□ -0.6
CCDC3-202ENST00000378839 RNF115Q9Y4L5 304 aa11.31□□□□□ -0.6
CCDC3-202ENST00000378839 WNT9BO14905 357 aa11.31□□□□□ -0.6
CCDC3-202ENST00000378839 MLNRO43193 412 aa11.31□□□□□ -0.6
CCDC3-202ENST00000378839 SEC11BP0C7V7 166 aa11.31□□□□□ -0.6
CCDC3-202ENST00000378839 RNF224P0DH78 156 aa11.31□□□□□ -0.6
CCDC3-202ENST00000378839 F2RL1P55085 397 aa11.31□□□□□ -0.6
CCDC3-202ENST00000378839 UCP2P55851 309 aa11.31□□□□□ -0.6
CCDC3-202ENST00000378839 ZNF497Q6ZNH5 498 aa11.31□□□□□ -0.6
CCDC3-202ENST00000378839 ZNF826PQ6ZT77 177 aa11.31□□□□□ -0.6
CCDC3-202ENST00000378839 MGAQ8IWI9 3026 aa11.31□□□□□ -0.6
CCDC3-202ENST00000378839 GRPP07492 148 aa11.3□□□□□ -0.6
CCDC3-202ENST00000378839 F2RP25116 425 aa11.3□□□□□ -0.6
CCDC3-202ENST00000378839 SNCAP37840 140 aa11.3□□□□□ -0.6
CCDC3-202ENST00000378839 DHRS7BQ6IAN0 325 aaPredicted RBP11.3□□□□□ -0.6
CCDC3-202ENST00000378839 FAM214BQ7L5A3 538 aa11.3□□□□□ -0.6
CCDC3-202ENST00000378839 TMEM252Q8N6L7 170 aa11.3□□□□□ -0.6
CCDC3-202ENST00000378839 OR5D13Q8NGL4 314 aa11.3□□□□□ -0.6
CCDC3-202ENST00000378839 OR10J5Q8NHC4 309 aa11.3□□□□□ -0.6
CCDC3-202ENST00000378839 AKR1E2Q96JD6 320 aa11.3□□□□□ -0.6
CCDC3-202ENST00000378839 TINAGQ9UJW2 476 aa11.3□□□□□ -0.6
CCDC3-202ENST00000378839 LRP5LA4QPB2 252 aa11.3□□□□□ -0.6
CCDC3-202ENST00000378839 H0Y980 276 aa11.3□□□□□ -0.6
CCDC3-202ENST00000378839 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.3□□□□□ -0.6
CCDC3-202ENST00000378839 PSPNO60542 156 aa11.3□□□□□ -0.6
CCDC3-202ENST00000378839 CST7O76096 145 aa11.3□□□□□ -0.6
CCDC3-202ENST00000378839 PGA5P0DJD9 388 aa11.3□□□□□ -0.6
CCDC3-202ENST00000378839 KRBOX4Q5JUW0 171 aa11.3□□□□□ -0.6
CCDC3-202ENST00000378839 Q6ZR03 302 aa11.3□□□□□ -0.6
CCDC3-202ENST00000378839 CNEP1R1Q8N9A8 125 aa11.3□□□□□ -0.6
CCDC3-202ENST00000378839 OR1J1Q8NGS3 322 aa11.3□□□□□ -0.6
CCDC3-202ENST00000378839 GPR146Q96CH1 333 aa11.3□□□□□ -0.6
CCDC3-202ENST00000378839 SPACA1Q9HBV2 294 aa11.3□□□□□ -0.6
CCDC3-202ENST00000378839 FZR1Q9UM11 496 aa11.3□□□□□ -0.6
CCDC3-202ENST00000378839 CHST1O43916 411 aa11.3□□□□□ -0.6
CCDC3-202ENST00000378839 OR2B8PP59922 312 aa11.3□□□□□ -0.6
CCDC3-202ENST00000378839 IGFL2Q6UWQ7 119 aa11.3□□□□□ -0.6
CCDC3-202ENST00000378839 KLF14Q8TD94 323 aaPredicted RBP11.3□□□□□ -0.6
CCDC3-202ENST00000378839 RTL8AQ9BWD3 113 aa11.3□□□□□ -0.6
CCDC3-202ENST00000378839 LYRM2Q9NU23 88 aaPredicted RBP11.3□□□□□ -0.6
CCDC3-202ENST00000378839 A0A1W2PPE3 182 aa11.29□□□□□ -0.6
CCDC3-202ENST00000378839 PITX3O75364 302 aa11.29□□□□□ -0.6
CCDC3-202ENST00000378839 CTXN2P0C2S0 81 aa11.29□□□□□ -0.6
CCDC3-202ENST00000378839 VDAC1P21796 283 aa11.29□□□□□ -0.6
CCDC3-202ENST00000378839 PTAFRP25105 342 aa11.29□□□□□ -0.6
CCDC3-202ENST00000378839 PPP1CCP36873 323 aaKnown RBP11.29□□□□□ -0.6
CCDC3-202ENST00000378839 CCL20P78556 96 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms