RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 SULT1A2P50226 295 aa0.97□□□□□ -2.25
VPS13A-206ENST00000376646 C1QTNF8P60827 252 aa0.97□□□□□ -2.25
VPS13A-206ENST00000376646 DEFA6Q01524 100 aa0.97□□□□□ -2.25
VPS13A-206ENST00000376646 TSPAN31Q12999 210 aa0.97□□□□□ -2.25
VPS13A-206ENST00000376646 PAFAH1B3Q15102 231 aaKnown RBP0.97□□□□□ -2.25
VPS13A-206ENST00000376646 HES3Q5TGS1 186 aa0.97□□□□□ -2.25
VPS13A-206ENST00000376646 HCP5Q6MZN7 132 aa0.97□□□□□ -2.25
VPS13A-206ENST00000376646 TTC33Q6PID6 262 aaPredicted RBP0.97□□□□□ -2.25
VPS13A-206ENST00000376646 HS3ST5Q8IZT8 346 aa0.97□□□□□ -2.25
VPS13A-206ENST00000376646 Q8NAQ8 132 aa0.97□□□□□ -2.25
VPS13A-206ENST00000376646 OR4P4Q8NGL7 312 aa0.97□□□□□ -2.25
VPS13A-206ENST00000376646 PPWD1Q96BP3 646 aaKnown RBP0.97□□□□□ -2.25
VPS13A-206ENST00000376646 TRNT1Q96Q11 434 aaKnown RBP0.97□□□□□ -2.25
VPS13A-206ENST00000376646 ZNF251Q9BRH9 671 aa0.97□□□□□ -2.25
VPS13A-206ENST00000376646 RPUSD1Q9UJJ7 312 aaKnown RBP0.97□□□□□ -2.25
VPS13A-206ENST00000376646 CARHSP1Q9Y2V2 147 aaKnown RBP0.97□□□□□ -2.25
VPS13A-206ENST00000376646 PTPRKQ15262 1439 aa0.97□□□□□ -2.25
VPS13A-206ENST00000376646 B4DEV8 164 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 E7EQL1 145 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 PHYHO14832 338 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 CYTH3O43739 400 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 SH2D1AO60880 128 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 UGT2B11O75310 529 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 LTAP01374 205 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 PSKH1P11801 424 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 PSMA1P25786 263 aaKnown RBP0.96□□□□□ -2.26
VPS13A-206ENST00000376646 ADORA1P30542 326 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 GABRA3P34903 492 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 STC1P52823 247 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 DLX6P56179 175 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 GABARAPL2P60520 117 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 CENPWQ5EE01 88 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 C10orf91Q5T1B1 145 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 NIPAL1Q6NVV3 410 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 MSRB3Q8IXL7 192 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 BLIDQ8IZY5 108 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 C2orf73Q8N5S3 287 aaPredicted RBP0.96□□□□□ -2.26
VPS13A-206ENST00000376646 OR5AK3PQ8NH89 298 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 LMX1AQ8TE12 382 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 HIST1H2BAQ96A08 127 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 UPF3BQ9BZI7 483 aaKnown RBP0.96□□□□□ -2.26
VPS13A-206ENST00000376646 BCL2L14Q9BZR8 327 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 CHST5Q9GZS9 411 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 ZNF286AQ9HBT8 521 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 LINC00588Q9Y4M8 146 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 TMEM94Q12767 1356 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 PIK3R4Q99570 1358 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 IGLV10-54A0A075B6I4 117 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 A0A1B0GU33 70 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 KMT2DO14686 5537 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 LECT2O14960 151 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 PSCAO43653 123 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 SYNGR1O43759 233 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 ADAP1O75689 374 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 PET100P0DJ07 73 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 OR12D1P0DN82 309 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 ZNF22P17026 224 aaPredicted RBP0.96□□□□□ -2.26
VPS13A-206ENST00000376646 LGALS3P17931 250 aaKnown RBP0.96□□□□□ -2.26
VPS13A-206ENST00000376646 GADD45AP24522 165 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 GRPRP30550 384 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 FAM3AP98173 230 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 TIMM23BQ5SRD1 257 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 HENMT1Q5T8I9 393 aaKnown RBP0.96□□□□□ -2.26
VPS13A-206ENST00000376646 NOXRED1Q6NXP6 359 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 EBLN2Q6P2I7 272 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 SPNS3Q6ZMD2 512 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 SCXQ7RTU7 201 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 DOLPP1Q86YN1 238 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 OR7G1Q8NGA0 311 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 OR8B2Q96RD0 313 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 HIGD2AQ9BW72 106 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 OR51B4Q9Y5P0 310 aa0.96□□□□□ -2.26
VPS13A-206ENST00000376646 ZNF407Q9C0G0 2248 aa0.95□□□□□ -2.26
VPS13A-206ENST00000376646 A0A1W2PNM2 257 aa0.95□□□□□ -2.26
VPS13A-206ENST00000376646 SDHAF1A6NFY7 115 aa0.95□□□□□ -2.26
VPS13A-206ENST00000376646 F5H5K5 113 aa0.95□□□□□ -2.26
VPS13A-206ENST00000376646 LIN7AO14910 233 aaPredicted RBP0.95□□□□□ -2.26
VPS13A-206ENST00000376646 SLC31A1O15431 190 aa0.95□□□□□ -2.26
VPS13A-206ENST00000376646 CALUO43852 315 aaPredicted RBP0.95□□□□□ -2.26
VPS13A-206ENST00000376646 SOX14O95416 240 aa0.95□□□□□ -2.26
VPS13A-206ENST00000376646 ATP6V1G2O95670 118 aa0.95□□□□□ -2.26
VPS13A-206ENST00000376646 OPN1SWP03999 348 aa0.95□□□□□ -2.26
VPS13A-206ENST00000376646 CTSGP08311 255 aa0.95□□□□□ -2.26
VPS13A-206ENST00000376646 CRABP1P29762 137 aa0.95□□□□□ -2.26
VPS13A-206ENST00000376646 UBE2G2P60604 165 aa0.95□□□□□ -2.26
VPS13A-206ENST00000376646 SKP1P63208 163 aa0.95□□□□□ -2.26
VPS13A-206ENST00000376646 GTF2BQ00403 316 aa0.95□□□□□ -2.26
VPS13A-206ENST00000376646 MEF2BQ02080 365 aaPredicted RBP0.95□□□□□ -2.26
VPS13A-206ENST00000376646 TNFRSF9Q07011 255 aa0.95□□□□□ -2.26
VPS13A-206ENST00000376646 BSPH1Q075Z2 132 aa0.95□□□□□ -2.26
VPS13A-206ENST00000376646 CST6Q15828 149 aa0.95□□□□□ -2.26
VPS13A-206ENST00000376646 VN1R4Q7Z5H5 301 aa0.95□□□□□ -2.26
VPS13A-206ENST00000376646 MTERF4Q7Z6M4 381 aaKnown RBP0.95□□□□□ -2.26
VPS13A-206ENST00000376646 SPATA24Q86W54 205 aa0.95□□□□□ -2.26
VPS13A-206ENST00000376646 NIT1Q86X76 327 aa0.95□□□□□ -2.26
VPS13A-206ENST00000376646 SLC13A5Q86YT5 568 aaPredicted RBP0.95□□□□□ -2.26
VPS13A-206ENST00000376646 ZBTB8OSQ8IWT0 167 aa0.95□□□□□ -2.26
VPS13A-206ENST00000376646 YIPF7Q8N8F6 280 aa0.95□□□□□ -2.26
VPS13A-206ENST00000376646 OR10D4PQ8NGN7 298 aa0.95□□□□□ -2.26
VPS13A-206ENST00000376646 RAD51AP1Q96B01 352 aa0.95□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms