RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 WNT1P04628 370 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 IGFBP7Q16270 282 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 FAM174AQ8TBP5 190 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 LGALS14Q8TCE9 139 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 SSMEM1Q8WWF3 244 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 PRRX2Q99811 253 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 NDUFAF3Q9BU61 184 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 TMPRSS13Q9BYE2 586 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 PRDM13Q9H4Q3 707 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 ADGRB3O60242 1522 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 K7ERS5 55 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 APOHP02749 345 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-202ENST00000375405 ANOS1P23352 680 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 SLC25A11Q02978 314 aaKnown RBP4.11□□□□□ -1.75
SCN1A-202ENST00000375405 CTF1Q16619 201 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 UQCC3Q6UW78 93 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 RNF165Q6ZSG1 346 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 FAM214BQ7L5A3 538 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 FGF13Q92913 245 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 C14orf132Q9NPU4 83 aa4.11□□□□□ -1.75
SCN1A-202ENST00000375405 AURKAIP1Q9NWT8 199 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-202ENST00000375405 SF3B6Q9Y3B4 125 aaKnown RBP4.11□□□□□ -1.75
SCN1A-202ENST00000375405 SMCHD1A6NHR9 2005 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 TIMP1P01033 207 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 PSG2P11465 335 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 CD99P14209 185 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 SLC10A6Q3KNW5 377 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 MPV17L2Q567V2 206 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 C6orf136Q5SQH8 315 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 SLC39A5Q6ZMH5 540 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 HSD17B14Q9BPX1 270 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 PRSS27Q9BQR3 290 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 PPRC1Q5VV67 1664 aaKnown RBP4.1□□□□□ -1.75
SCN1A-202ENST00000375405 IGHV3-64A0A075B6Q5 118 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 MED19A0JLT2 244 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-202ENST00000375405 HBDP02042 147 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 P2RY4P51582 365 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 CD69Q07108 199 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 SPRED3Q2MJR0 410 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 HLA-DRB5Q30154 266 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 ZNF385CQ66K41 422 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-202ENST00000375405 TCF23Q7RTU1 214 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 LINC00518Q8N0U6 118 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 SLC25A28Q96A46 364 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 TAS2R4Q9NYW5 299 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 NPAP1Q9NZP6 1156 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 NRXN1Q9ULB1 1477 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 IGHV3-72A0A0B4J1Y9 119 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 M0R381 172 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 GCAP28676 217 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 RNASE4P34096 147 aaKnown RBP4.1□□□□□ -1.75
SCN1A-202ENST00000375405 ETV6P41212 452 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 TSPAN7P41732 249 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 RPL26P61254 145 aaKnown RBP4.1□□□□□ -1.75
SCN1A-202ENST00000375405 DLK2Q6UY11 383 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 RPS4Y2Q8TD47 263 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 RNF133Q8WVZ7 376 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 SIGLEC10Q96LC7 697 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 PARLQ9H300 379 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 TXNRD2Q9NNW7 524 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 GPR27Q9NS67 375 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 HIGD1AQ9Y241 93 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 LRCOL1A6NCL2 159 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 C15orf61A6NNL5 157 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 TMEM250H0YL14 139 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 SELENOFO60613 162 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 HIST1H1TP22492 207 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-202ENST00000375405 FDXRP22570 491 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 PSMB5P28074 263 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 MMP16P51512 607 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 AANATQ16613 207 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 LDLRAD3Q86YD5 345 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 CELF2-AS1Q8N7Q2 184 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 ST6GAL2Q96JF0 529 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 PGLYRP3Q96LB9 341 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 TMEM204Q9BSN7 226 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 CFHR5Q9BXR6 569 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 NAA50Q9GZZ1 169 aaKnown RBP4.1□□□□□ -1.75
SCN1A-202ENST00000375405 ZBP1Q9H171 429 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 SMOC1Q9H4F8 434 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 DLC1Q96QB1 1528 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 KIF1AQ12756 1690 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 IGHV3OR16-13A0A075B7E8 117 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 IGHV3-74A0A0B4J1X5 117 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 GFYI3L273 518 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 IGHV3-23P01764 117 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 MRPS21P82921 87 aaKnown RBP4.1□□□□□ -1.75
SCN1A-202ENST00000375405 Q71RC1 249 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-202ENST00000375405 NKAIN4Q8IVV8 208 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 C2CD4AQ8NCU7 369 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-202ENST00000375405 OR52B4Q8NGK2 314 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 ZIC5Q96T25 663 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 ANAPC13Q9BS18 74 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 GPR84Q9NQS5 396 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 MROH2AA6NES4 1674 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 TET1Q8NFU7 2136 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 TRAV8-6A0A0B4J262 113 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 LOC285095A0A1B0GVY8 99 aa4.1□□□□□ -1.75
SCN1A-202ENST00000375405 EGR2P11161 476 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-202ENST00000375405 PMELP40967 661 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms