RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 TMEM56-RWDD3S4R434 201 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 HEATR5AQ86XA9 2040 aa7.03□□□□□ -1.28
ATG4A-201ENST00000343524 EDDM13A0A1B0GTR0 161 aa7.02□□□□□ -1.29
ATG4A-201ENST00000343524 OR5B21A6NL26 309 aa7.02□□□□□ -1.29
ATG4A-201ENST00000343524 FOXS1O43638 330 aa7.02□□□□□ -1.29
ATG4A-201ENST00000343524 HYPMO75409 117 aa7.02□□□□□ -1.29
ATG4A-201ENST00000343524 REG1AP05451 166 aa7.02□□□□□ -1.29
ATG4A-201ENST00000343524 C8AP07357 584 aa7.02□□□□□ -1.29
ATG4A-201ENST00000343524 LINC00271P0C7V0 271 aa7.02□□□□□ -1.29
ATG4A-201ENST00000343524 CRISP2P16562 243 aa7.02□□□□□ -1.29
ATG4A-201ENST00000343524 GCH1P30793 250 aa7.02□□□□□ -1.29
ATG4A-201ENST00000343524 FMODQ06828 376 aa7.02□□□□□ -1.29
ATG4A-201ENST00000343524 Q0VG73 95 aa7.02□□□□□ -1.29
ATG4A-201ENST00000343524 VAMP3Q15836 100 aa7.02□□□□□ -1.29
ATG4A-201ENST00000343524 COX19Q49B96 90 aa7.02□□□□□ -1.29
ATG4A-201ENST00000343524 LDLRAD2Q5SZI1 272 aa7.02□□□□□ -1.29
ATG4A-201ENST00000343524 FAM78BQ5VT40 261 aa7.02□□□□□ -1.29
ATG4A-201ENST00000343524 MYPOPQ86VE0 399 aaPredicted RBP7.02□□□□□ -1.29
ATG4A-201ENST00000343524 OR4N2Q8NGD1 307 aa7.02□□□□□ -1.29
ATG4A-201ENST00000343524 OR5D18Q8NGL1 313 aa7.02□□□□□ -1.29
ATG4A-201ENST00000343524 CCDC74BQ96LY2 380 aa7.02□□□□□ -1.29
ATG4A-201ENST00000343524 OR2A5Q96R48 311 aa7.02□□□□□ -1.29
ATG4A-201ENST00000343524 SLC46A2Q9BY10 475 aa7.02□□□□□ -1.29
ATG4A-201ENST00000343524 PHPT1Q9NRX4 125 aaPredicted RBP7.02□□□□□ -1.29
ATG4A-201ENST00000343524 RPRMQ9NS64 109 aa7.02□□□□□ -1.29
ATG4A-201ENST00000343524 SOHLH2Q9NX45 425 aa7.02□□□□□ -1.29
ATG4A-201ENST00000343524 TIMM9Q9Y5J7 89 aa7.02□□□□□ -1.29
ATG4A-201ENST00000343524 B3GALT1Q9Y5Z6 326 aa7.02□□□□□ -1.29
ATG4A-201ENST00000343524 KIF26BQ2KJY2 2108 aa7.02□□□□□ -1.29
ATG4A-201ENST00000343524 IGHV2-26A0A0B4J1V2 119 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 ATXN7O15265 892 aaPredicted RBP7.01□□□□□ -1.29
ATG4A-201ENST00000343524 TMPRSS2O15393 492 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 TNFSF14O43557 240 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 TRAPPC6AO75865 159 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 CST7O76096 145 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 TNFSF15O95150 251 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 ONECUT2O95948 504 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 NBEAP1P0C6P0 100 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 ELAVL3Q14576 367 aaKnown RBP7.01□□□□□ -1.29
ATG4A-201ENST00000343524 EXT1Q16394 746 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 PHLDA2Q53GA4 152 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 TMEM215Q68D42 235 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 MEX3BQ6ZN04 569 aaKnown RBP7.01□□□□□ -1.29
ATG4A-201ENST00000343524 ABHD12BQ7Z5M8 362 aaPredicted RBP7.01□□□□□ -1.29
ATG4A-201ENST00000343524 BAGE3Q86Y29 109 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 BAGE2Q86Y30 109 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 CA13Q8N1Q1 262 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 OR4C3Q8NH37 302 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 SSC4DQ8WTU2 575 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 LHX4Q969G2 390 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 NEIL1Q96FI4 390 aaPredicted RBP7.01□□□□□ -1.29
ATG4A-201ENST00000343524 REEP6Q96HR9 211 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 FAM71F1Q96KD3 344 aaPredicted RBP7.01□□□□□ -1.29
ATG4A-201ENST00000343524 FOXN4Q96NZ1 517 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 SLC39A9Q9NUM3 307 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 KLHL13Q9P2N7 655 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 CLN8Q9UBY8 286 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 UBE2J1Q9Y385 318 aaPredicted RBP7.01□□□□□ -1.29
ATG4A-201ENST00000343524 SPEGQ15772 3267 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 ZZEF1O43149 2961 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 CPAMD8Q8IZJ3 1885 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 CCDC163A0A0D9SF12 145 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 NKX2-6A6NCS4 301 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 IGLON5A6NGN9 336 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 NPIPA5E9PKD4 350 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 J3QR06 171 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 SIRPB1O00241 398 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 MLNRO43193 412 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 TRAF3IP2O43734 574 aaPredicted RBP7.01□□□□□ -1.29
ATG4A-201ENST00000343524 ZNF253O75346 499 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 SLC25A6P12236 298 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 VDAC1P21796 283 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 ADMP35318 185 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 COMPP49747 757 aaPredicted RBP7.01□□□□□ -1.29
ATG4A-201ENST00000343524 SEC13P55735 322 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 FXYD4P59646 89 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 ID3Q02535 119 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 TLE3Q04726 772 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 MESP2Q0VG99 397 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 ZNF154Q13106 437 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 LRRC10Q5BKY1 277 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 SPIN3Q5JUX0 258 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 VWA1Q6PCB0 445 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 TCF24Q7RTU0 167 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 CPEB2Q7Z5Q1 589 aaKnown RBP7.01□□□□□ -1.29
ATG4A-201ENST00000343524 TMEM217Q8N7C4 229 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 OR51E1Q8TCB6 317 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 DOK4Q8TEW6 326 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 PP6455Q8WZ26 134 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 FAM3CQ92520 227 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 SPSB1Q96BD6 273 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 C10orf35Q96D05 121 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 ZFYVE21Q9BQ24 234 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 OR10A5Q9H207 317 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.01□□□□□ -1.29
ATG4A-201ENST00000343524 PILRAQ9UKJ1 303 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 NXT1Q9UKK6 140 aaKnown RBP7.01□□□□□ -1.29
ATG4A-201ENST00000343524 NPIPA1Q9UND3 350 aa7.01□□□□□ -1.29
ATG4A-201ENST00000343524 SAA2-SAA4A0A096LPE2 208 aa7□□□□□ -1.29
ATG4A-201ENST00000343524 CTXND1A0A1B0GTU2 59 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms