RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 STEAP3Q658P3 488 aa11.5□□□□□ -0.57
CCDC88B-201ENST00000301897 SLC25A48Q6ZT89 311 aaKnown RBP11.5□□□□□ -0.57
CCDC88B-201ENST00000301897 ZNF491Q8N8L2 437 aa11.5□□□□□ -0.57
CCDC88B-201ENST00000301897 OR10K1Q8NGX5 313 aa11.5□□□□□ -0.57
CCDC88B-201ENST00000301897 OR52N1Q8NH53 320 aa11.5□□□□□ -0.57
CCDC88B-201ENST00000301897 S100A13Q99584 98 aa11.5□□□□□ -0.57
CCDC88B-201ENST00000301897 LYSTQ99698 3801 aa11.5□□□□□ -0.57
CCDC88B-201ENST00000301897 ALG8Q9BVK2 526 aa11.5□□□□□ -0.57
CCDC88B-201ENST00000301897 GHITMQ9H3K2 345 aa11.5□□□□□ -0.57
CCDC88B-201ENST00000301897 RYR2Q92736 4967 aa11.49□□□□□ -0.57
CCDC88B-201ENST00000301897 LCE6AA0A183 80 aa11.49□□□□□ -0.57
CCDC88B-201ENST00000301897 OVOL1O14753 267 aa11.49□□□□□ -0.57
CCDC88B-201ENST00000301897 ZNF780AO75290 641 aaPredicted RBP11.49□□□□□ -0.57
CCDC88B-201ENST00000301897 GBX2P52951 348 aaPredicted RBP11.49□□□□□ -0.57
CCDC88B-201ENST00000301897 F2RL1P55085 397 aa11.49□□□□□ -0.57
CCDC88B-201ENST00000301897 ZNF497Q6ZNH5 498 aa11.49□□□□□ -0.57
CCDC88B-201ENST00000301897 NEK7Q8TDX7 302 aa11.49□□□□□ -0.57
CCDC88B-201ENST00000301897 CITED4Q96RK1 184 aa11.49□□□□□ -0.57
CCDC88B-201ENST00000301897 OR51J1Q9H342 316 aa11.49□□□□□ -0.57
CCDC88B-201ENST00000301897 SPACA1Q9HBV2 294 aa11.49□□□□□ -0.57
CCDC88B-201ENST00000301897 ISYNA1Q9NPH2 558 aa11.49□□□□□ -0.57
CCDC88B-201ENST00000301897 GNG12Q9UBI6 72 aa11.49□□□□□ -0.57
CCDC88B-201ENST00000301897 HUWE1Q7Z6Z7 4374 aaKnown RBP11.48□□□□□ -0.57
CCDC88B-201ENST00000301897 AIPO00170 330 aa11.48□□□□□ -0.57
CCDC88B-201ENST00000301897 LANCL1O43813 399 aa11.48□□□□□ -0.57
CCDC88B-201ENST00000301897 SAP30O75446 220 aa11.48□□□□□ -0.57
CCDC88B-201ENST00000301897 FADS2O95864 444 aaKnown RBP11.48□□□□□ -0.57
CCDC88B-201ENST00000301897 IGLV1-40P01703 118 aa11.48□□□□□ -0.57
CCDC88B-201ENST00000301897 PPIFP30405 207 aaKnown RBP11.48□□□□□ -0.57
CCDC88B-201ENST00000301897 PPP3R1P63098 170 aa11.48□□□□□ -0.57
CCDC88B-201ENST00000301897 MMDQ15546 238 aa11.48□□□□□ -0.57
CCDC88B-201ENST00000301897 C6orf183Q5T699 404 aa11.48□□□□□ -0.57
CCDC88B-201ENST00000301897 TRAT1Q6PIZ9 186 aa11.48□□□□□ -0.57
CCDC88B-201ENST00000301897 LHFPL3Q86UP9 236 aa11.48□□□□□ -0.57
CCDC88B-201ENST00000301897 OR6Q1Q8NGQ2 317 aa11.48□□□□□ -0.57
CCDC88B-201ENST00000301897 LGALS12Q96DT0 336 aa11.48□□□□□ -0.57
CCDC88B-201ENST00000301897 PDCD1LG2Q9BQ51 273 aa11.48□□□□□ -0.57
CCDC88B-201ENST00000301897 GNB4Q9HAV0 340 aa11.48□□□□□ -0.57
CCDC88B-201ENST00000301897 ING4Q9UNL4 249 aa11.48□□□□□ -0.57
CCDC88B-201ENST00000301897 ERGIC3Q9Y282 383 aa11.48□□□□□ -0.57
CCDC88B-201ENST00000301897 MRPS28Q9Y2Q9 187 aaKnown RBP11.48□□□□□ -0.57
CCDC88B-201ENST00000301897 IGHV3-43A0A0B4J1X8 118 aa11.47□□□□□ -0.57
CCDC88B-201ENST00000301897 ZNF736B4DX44 427 aaPredicted RBP11.47□□□□□ -0.57
CCDC88B-201ENST00000301897 GEMIN2O14893 280 aaKnown RBP11.47□□□□□ -0.57
CCDC88B-201ENST00000301897 CDRT1O95170 752 aa11.47□□□□□ -0.57
CCDC88B-201ENST00000301897 HLA-DRB1P01911 266 aa11.47□□□□□ -0.57
CCDC88B-201ENST00000301897 MT-ND4P03905 459 aa11.47□□□□□ -0.57
CCDC88B-201ENST00000301897 FRMD6-AS1P0C7T7 363 aa11.47□□□□□ -0.57
CCDC88B-201ENST00000301897 IGHV3-43DP0DP04 118 aa11.47□□□□□ -0.57
CCDC88B-201ENST00000301897 LSAMPQ13449 338 aa11.47□□□□□ -0.57
CCDC88B-201ENST00000301897 KIAA0141Q14154 515 aaPredicted RBP11.47□□□□□ -0.57
CCDC88B-201ENST00000301897 GPR176Q14439 515 aa11.47□□□□□ -0.57
CCDC88B-201ENST00000301897 ATAD3CQ5T2N8 411 aa11.47□□□□□ -0.57
CCDC88B-201ENST00000301897 ASPHD1Q5U4P2 390 aa11.47□□□□□ -0.57
CCDC88B-201ENST00000301897 C1orf146Q5VVC0 180 aa11.47□□□□□ -0.57
CCDC88B-201ENST00000301897 OR51A2Q8NGJ7 313 aa11.47□□□□□ -0.57
CCDC88B-201ENST00000301897 GPR148Q8TDV2 347 aa11.47□□□□□ -0.57
CCDC88B-201ENST00000301897 CCDC107Q8WV48 283 aa11.47□□□□□ -0.57
CCDC88B-201ENST00000301897 DCUN1D4Q92564 292 aa11.47□□□□□ -0.57
CCDC88B-201ENST00000301897 KLK15Q9H2R5 256 aa11.47□□□□□ -0.57
CCDC88B-201ENST00000301897 ISG20L2Q9H9L3 353 aaKnown RBP11.47□□□□□ -0.57
CCDC88B-201ENST00000301897 TMEM138Q9NPI0 162 aa11.47□□□□□ -0.57
CCDC88B-201ENST00000301897 CSMD3Q7Z407 3707 aa11.47□□□□□ -0.57
CCDC88B-201ENST00000301897 TRAV41A0A0B4J266 112 aa11.46□□□□□ -0.57
CCDC88B-201ENST00000301897 FAM90A10PA6NDY2 464 aa11.46□□□□□ -0.57
CCDC88B-201ENST00000301897 SAC3D1A6NKF1 404 aa11.46□□□□□ -0.57
CCDC88B-201ENST00000301897 ALPLP05186 524 aa11.46□□□□□ -0.57
CCDC88B-201ENST00000301897 SLC2A2P11168 524 aaPredicted RBP11.46□□□□□ -0.57
CCDC88B-201ENST00000301897 GTF2F2P13984 249 aa11.46□□□□□ -0.57
CCDC88B-201ENST00000301897 GP9P14770 177 aa11.46□□□□□ -0.57
CCDC88B-201ENST00000301897 MYF6P23409 242 aa11.46□□□□□ -0.57
CCDC88B-201ENST00000301897 ZNF93P35789 620 aaPredicted RBP11.46□□□□□ -0.57
CCDC88B-201ENST00000301897 RASSF2P50749 326 aa11.46□□□□□ -0.57
CCDC88B-201ENST00000301897 RAB9AP51151 201 aa11.46□□□□□ -0.57
CCDC88B-201ENST00000301897 GNB1P62873 340 aa11.46□□□□□ -0.57
CCDC88B-201ENST00000301897 GABPB1Q06547 395 aaPredicted RBP11.46□□□□□ -0.57
CCDC88B-201ENST00000301897 ZNF439Q8NDP4 499 aa11.46□□□□□ -0.57
CCDC88B-201ENST00000301897 UBALD1Q8TB05 177 aa11.46□□□□□ -0.57
CCDC88B-201ENST00000301897 Q96MT0 163 aa11.46□□□□□ -0.57
CCDC88B-201ENST00000301897 ZNF251Q9BRH9 671 aa11.46□□□□□ -0.57
CCDC88B-201ENST00000301897 CST11Q9H112 138 aa11.46□□□□□ -0.57
CCDC88B-201ENST00000301897 PARP11Q9NR21 331 aa11.46□□□□□ -0.57
CCDC88B-201ENST00000301897 ERVK13-1Q9NX77 482 aa11.46□□□□□ -0.57
CCDC88B-201ENST00000301897 TAS2R4Q9NYW5 299 aa11.46□□□□□ -0.57
CCDC88B-201ENST00000301897 TRAPPC2LQ9UL33 140 aa11.46□□□□□ -0.57
CCDC88B-201ENST00000301897 WSB1Q9Y6I7 421 aa11.46□□□□□ -0.57
CCDC88B-201ENST00000301897 C12orf77C9JDV5 145 aa11.45□□□□□ -0.58
CCDC88B-201ENST00000301897 MCRIP1C9JLW8 97 aa11.45□□□□□ -0.58
CCDC88B-201ENST00000301897 E9PI62 339 aa11.45□□□□□ -0.58
CCDC88B-201ENST00000301897 LINC01619G3V211 115 aa11.45□□□□□ -0.58
CCDC88B-201ENST00000301897 ARPC1BO15143 372 aaKnown RBP11.45□□□□□ -0.58
CCDC88B-201ENST00000301897 CA11O75493 328 aa11.45□□□□□ -0.58
CCDC88B-201ENST00000301897 OR8U9P0C7N5 309 aa11.45□□□□□ -0.58
CCDC88B-201ENST00000301897 SPNP16150 400 aa11.45□□□□□ -0.58
CCDC88B-201ENST00000301897 SERPINA2P20848 420 aa11.45□□□□□ -0.58
CCDC88B-201ENST00000301897 VHLP40337 213 aa11.45□□□□□ -0.58
CCDC88B-201ENST00000301897 SOX2P48431 317 aa11.45□□□□□ -0.58
CCDC88B-201ENST00000301897 RAB40BQ12829 278 aa11.45□□□□□ -0.58
CCDC88B-201ENST00000301897 CCDC58Q4VC31 144 aa11.45□□□□□ -0.58
CCDC88B-201ENST00000301897 CT45A1Q5HYN5 189 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms