RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 FKBP2P26885 142 aaKnown RBP8.61□□□□□ -1.03
LIG3-201ENST00000262327 CDX1P47902 265 aaPredicted RBP8.61□□□□□ -1.03
LIG3-201ENST00000262327 UBE2KP61086 200 aa8.61□□□□□ -1.03
LIG3-201ENST00000262327 ZNF674Q2M3X9 581 aa8.61□□□□□ -1.03
LIG3-201ENST00000262327 TMEM42Q69YG0 159 aa8.61□□□□□ -1.03
LIG3-201ENST00000262327 C20orf204Q6ZNR8 217 aa8.61□□□□□ -1.03
LIG3-201ENST00000262327 Q6ZSR3 168 aa8.61□□□□□ -1.03
LIG3-201ENST00000262327 IL1F10Q8WWZ1 152 aa8.61□□□□□ -1.03
LIG3-201ENST00000262327 GPR35Q9HC97 309 aa8.61□□□□□ -1.03
LIG3-201ENST00000262327 STRAPQ9Y3F4 350 aaKnown RBP8.61□□□□□ -1.03
LIG3-201ENST00000262327 DSPP15924 2871 aaKnown RBP8.61□□□□□ -1.03
LIG3-201ENST00000262327 LOC102723996A0A087X1L8 192 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 TGIF2-C20orf24A0A0A6YYL0 155 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 C5orf49A4QMS7 147 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 SLC22A20A6NK97 555 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 EREGO14944 169 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 SYNGR1O43759 233 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 NGFP01138 241 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 IGHEP01854 428 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 TMEM11P17152 192 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 GDF1P27539 372 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 UCP2P55851 309 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 C6orf15Q6UXA7 325 aaPredicted RBP8.6□□□□□ -1.03
LIG3-201ENST00000262327 GOLT1BQ9Y3E0 138 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 ZFHX4Q86UP3 3567 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 IGKV1-6A0A0C4DH72 117 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 ZNF503-AS2A6NEH8 195 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 TK1P04183 234 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 FGF8P55075 233 aaPredicted RBP8.6□□□□□ -1.03
LIG3-201ENST00000262327 MLF1P58340 268 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 DLK1P80370 383 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 Q0VFX4 171 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 SPINK14Q6IE38 97 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 SLC25A24Q6NUK1 477 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 ASCL4Q6XD76 172 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 THNSL2Q86YJ6 484 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 ZNF100Q8IYN0 542 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 COMMD1Q8N668 190 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 CPT1CQ8TCG5 803 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 PRRG4Q9BZD6 226 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 SPRY4Q9C004 299 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 LILRA1O75019 489 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 CELA3AP09093 270 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 IAPPP10997 89 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 ERVFRD-1P60508 538 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 PRDX4Q13162 271 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 C4orf17Q53FE4 359 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 HES3Q5TGS1 186 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 TMEM164Q5U3C3 297 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 GFI1BQ5VTD9 330 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 ZNF429Q86V71 674 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 Q8WTZ3 238 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 RSG1Q9BU20 258 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 PLEKHF2Q9H8W4 249 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 CALHM2Q9HA72 323 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 FAM86C1Q9NVL1 165 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 MTCH1Q9NZJ7 389 aa8.6□□□□□ -1.03
LIG3-201ENST00000262327 ZFP92A6NM28 416 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 ZNF732B4DXR9 585 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 ZNF16P17020 682 aaPredicted RBP8.59□□□□□ -1.03
LIG3-201ENST00000262327 PMELP40967 661 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 ARF1P84077 181 aaKnown RBP8.59□□□□□ -1.03
LIG3-201ENST00000262327 ZNF266Q14584 549 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 RHEBQ15382 184 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 EXT1Q16394 746 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 MPV17LQ2QL34 196 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 SAPCD1Q5SSQ6 148 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 TMEM211Q6ICI0 200 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 LCN15Q6UWW0 184 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 DHRS13Q6UX07 377 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 IL22RA1Q8N6P7 574 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 OR2Y1Q8NGV0 311 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 RYDENQ9NUL5 291 aaKnown RBP8.59□□□□□ -1.03
LIG3-201ENST00000262327 GNG13Q9P2W3 67 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 PRR14LQ5THK1 2151 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 DOCK10Q96BY6 2186 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 RPL36A-HNRNPH2H7BZ11 118 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 SRP19P09132 144 aaKnown RBP8.59□□□□□ -1.03
LIG3-201ENST00000262327 NPSP0C0P6 89 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 LMO1P25800 156 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 RPL23AP62750 156 aaKnown RBP8.59□□□□□ -1.03
LIG3-201ENST00000262327 ICAM4Q14773 271 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 AKR1C8PQ5T2L2 129 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 HEPN1Q6WQI6 88 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 CMTM1Q8IZ96 169 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 OR2V1Q8NHB1 315 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 MUCL1Q96DR8 90 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 SIGLEC12Q96PQ1 595 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 HES7Q9BYE0 225 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 C11orf1Q9H5F2 150 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 ZNF552Q9H707 407 aaPredicted RBP8.59□□□□□ -1.03
LIG3-201ENST00000262327 VSIRQ9H7M9 311 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 SH2D2AQ9NP31 389 aa8.59□□□□□ -1.03
LIG3-201ENST00000262327 LYRM2Q9NU23 88 aaPredicted RBP8.59□□□□□ -1.03
LIG3-201ENST00000262327 A0A1W2PR80 420 aa8.58□□□□□ -1.04
LIG3-201ENST00000262327 LRRC3CA6NJW4 275 aa8.58□□□□□ -1.04
LIG3-201ENST00000262327 IFNA17P01571 189 aa8.58□□□□□ -1.04
LIG3-201ENST00000262327 FOLR3P41439 243 aa8.58□□□□□ -1.04
LIG3-201ENST00000262327 UCP3P55916 312 aa8.58□□□□□ -1.04
LIG3-201ENST00000262327 OR8B8Q15620 311 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms