RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 KNTC1P50748 2209 aa13.98□□□□□ -0.17
HOXD3-201ENST00000249440 A0A1B0GU03 582 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 DEGS1O15121 323 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 NXPH3O95157 252 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 SP1P08047 785 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 CEACAM1P13688 526 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 AGAP20933 346 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 MEOX1P50221 254 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 MEOX2P50222 304 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 C3AR1Q16581 482 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 SPSB3Q6PJ21 355 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 STX12Q86Y82 276 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 C17orf78Q8N4C9 275 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 OR51B6Q9H340 312 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 OR51I2Q9H344 312 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 LAMA5O15230 3695 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 A0A1W2PPH5 198 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 LRP5LA4QPB2 252 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 CA6P23280 308 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 CCL20P78556 96 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 ZNF154Q13106 437 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 EIF2S3LQ2VIR3 472 aaKnown RBP13.97□□□□□ -0.17
HOXD3-201ENST00000249440 AKR1C8PQ5T2L2 129 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 OR2T2Q6IF00 324 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 OR1K1Q8NGR3 316 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 OR51H1Q8NH63 302 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 IL1F10Q8WWZ1 152 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 ATP5SQ99766 215 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 C12orf49Q9H741 205 aa13.97□□□□□ -0.17
HOXD3-201ENST00000249440 A0A1W2PNU3 283 aaPredicted RBP13.96□□□□□ -0.17
HOXD3-201ENST00000249440 A6NLC8 198 aa13.96□□□□□ -0.17
HOXD3-201ENST00000249440 DFFBO76075 338 aa13.96□□□□□ -0.17
HOXD3-201ENST00000249440 RAB5AP20339 215 aa13.96□□□□□ -0.17
HOXD3-201ENST00000249440 MDH2P40926 338 aaKnown RBP13.96□□□□□ -0.17
HOXD3-201ENST00000249440 PAX9P55771 341 aa13.96□□□□□ -0.17
HOXD3-201ENST00000249440 RPL23AP62750 156 aaKnown RBP13.96□□□□□ -0.17
HOXD3-201ENST00000249440 TLE4Q04727 773 aa13.96□□□□□ -0.17
HOXD3-201ENST00000249440 SLC10A1Q14973 349 aa13.96□□□□□ -0.17
HOXD3-201ENST00000249440 OR10V1Q8NGI7 309 aa13.96□□□□□ -0.17
HOXD3-201ENST00000249440 CFAP47Q6ZTR5 3102 aa13.96□□□□□ -0.18
HOXD3-201ENST00000249440 C5orf52A6NGY3 159 aa13.96□□□□□ -0.18
HOXD3-201ENST00000249440 NPIPB11E5RHQ5 1161 aa13.96□□□□□ -0.18
HOXD3-201ENST00000249440 J3QT63 122 aa13.96□□□□□ -0.18
HOXD3-201ENST00000249440 SLC33A1O00400 549 aaPredicted RBP13.96□□□□□ -0.18
HOXD3-201ENST00000249440 RHBDL1O75783 438 aa13.96□□□□□ -0.18
HOXD3-201ENST00000249440 IL18BPO95998 194 aa13.96□□□□□ -0.18
HOXD3-201ENST00000249440 WNT2P09544 360 aa13.96□□□□□ -0.18
HOXD3-201ENST00000249440 PSG2P11465 335 aa13.96□□□□□ -0.18
HOXD3-201ENST00000249440 RAB2AP61019 212 aa13.96□□□□□ -0.18
HOXD3-201ENST00000249440 PLA2G2CQ5R387 149 aa13.96□□□□□ -0.18
HOXD3-201ENST00000249440 FBXW9Q5XUX1 488 aa13.96□□□□□ -0.18
HOXD3-201ENST00000249440 DPPA3Q6W0C5 159 aa13.96□□□□□ -0.18
HOXD3-201ENST00000249440 FAM24BQ8N5W8 94 aa13.96□□□□□ -0.18
HOXD3-201ENST00000249440 RNASE11Q8TAA1 199 aaKnown RBP13.96□□□□□ -0.18
HOXD3-201ENST00000249440 GPR146Q96CH1 333 aa13.96□□□□□ -0.18
HOXD3-201ENST00000249440 RAB40CQ96S21 281 aa13.96□□□□□ -0.18
HOXD3-201ENST00000249440 PARD6AQ9NPB6 346 aa13.96□□□□□ -0.18
HOXD3-201ENST00000249440 TREM2Q9NZC2 230 aa13.96□□□□□ -0.18
HOXD3-201ENST00000249440 PUS1Q9Y606 427 aaKnown RBP eCLIP13.96□□□□□ -0.18
HOXD3-201ENST00000249440 CDX4O14627 284 aaPredicted RBP13.95□□□□□ -0.18
HOXD3-201ENST00000249440 ARG1P05089 322 aa13.95□□□□□ -0.18
HOXD3-201ENST00000249440 ZNF14P17017 642 aaPredicted RBP13.95□□□□□ -0.18
HOXD3-201ENST00000249440 SPINK2P20155 84 aa13.95□□□□□ -0.18
HOXD3-201ENST00000249440 EPHA1P21709 976 aa13.95□□□□□ -0.18
HOXD3-201ENST00000249440 TAS2R30P59541 319 aa13.95□□□□□ -0.18
HOXD3-201ENST00000249440 RUNX1Q01196 453 aa13.95□□□□□ -0.18
HOXD3-201ENST00000249440 TGIF1Q15583 401 aa13.95□□□□□ -0.18
HOXD3-201ENST00000249440 MED12LQ86YW9 2145 aa13.95□□□□□ -0.18
HOXD3-201ENST00000249440 A0A0G2JRQ6 117 aa13.95□□□□□ -0.18
HOXD3-201ENST00000249440 EIF3GO75821 320 aaKnown RBP eCLIP13.95□□□□□ -0.18
HOXD3-201ENST00000249440 MOB1BQ7L9L4 216 aa13.95□□□□□ -0.18
HOXD3-201ENST00000249440 MDP1Q86V88 176 aa13.95□□□□□ -0.18
HOXD3-201ENST00000249440 BCL2L2Q92843 193 aaPredicted RBP13.95□□□□□ -0.18
HOXD3-201ENST00000249440 RBMXL1Q96E39 390 aaKnown RBP13.95□□□□□ -0.18
HOXD3-201ENST00000249440 RTL8AQ9BWD3 113 aa13.95□□□□□ -0.18
HOXD3-201ENST00000249440 HIPK2Q9H2X6 1198 aa13.95□□□□□ -0.18
HOXD3-201ENST00000249440 A0A1W2PPE2 198 aa13.94□□□□□ -0.18
HOXD3-201ENST00000249440 TXNL1O43396 289 aa13.94□□□□□ -0.18
HOXD3-201ENST00000249440 CNOT4O95628 575 aaKnown RBP13.94□□□□□ -0.18
HOXD3-201ENST00000249440 HBE1P02100 147 aa13.94□□□□□ -0.18
HOXD3-201ENST00000249440 SP5Q6BEB4 398 aaPredicted RBP13.94□□□□□ -0.18
HOXD3-201ENST00000249440 Q6P435 159 aa13.94□□□□□ -0.18
HOXD3-201ENST00000249440 Q8IYB0 196 aa13.94□□□□□ -0.18
HOXD3-201ENST00000249440 MDS2Q8NDY4 140 aa13.94□□□□□ -0.18
HOXD3-201ENST00000249440 LSM10Q969L4 123 aaKnown RBP13.94□□□□□ -0.18
HOXD3-201ENST00000249440 FER1L6-AS2Q96M78 137 aa13.94□□□□□ -0.18
HOXD3-201ENST00000249440 WSB1Q9Y6I7 421 aa13.94□□□□□ -0.18
HOXD3-201ENST00000249440 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.93□□□□□ -0.18
HOXD3-201ENST00000249440 UBE2CO00762 179 aa13.93□□□□□ -0.18
HOXD3-201ENST00000249440 IFNA5P01569 189 aa13.93□□□□□ -0.18
HOXD3-201ENST00000249440 HAGHQ16775 308 aa13.93□□□□□ -0.18
HOXD3-201ENST00000249440 TBC1D28Q2M2D7 210 aa13.93□□□□□ -0.18
HOXD3-201ENST00000249440 SPATA46Q5T0L3 261 aa13.93□□□□□ -0.18
HOXD3-201ENST00000249440 SLC25A24Q6NUK1 477 aa13.93□□□□□ -0.18
HOXD3-201ENST00000249440 MALSU1Q96EH3 234 aa13.93□□□□□ -0.18
HOXD3-201ENST00000249440 GP6Q9HCN6 339 aa13.93□□□□□ -0.18
HOXD3-201ENST00000249440 OR1A1Q9P1Q5 309 aa13.93□□□□□ -0.18
HOXD3-201ENST00000249440 LIPGQ9Y5X9 500 aa13.93□□□□□ -0.18
HOXD3-201ENST00000249440 GVINP1Q7Z2Y8 2422 aa13.93□□□□□ -0.18
HOXD3-201ENST00000249440 hCG_1809904A0A1W2PP81 198 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms