RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 PDZK1IP1Q13113 114 aa11.04□□□□□ -0.64
CLN3-249ENST00000636685 APOFQ13790 326 aa11.04□□□□□ -0.64
CLN3-249ENST00000636685 ECSCRQ19T08 205 aa11.04□□□□□ -0.64
CLN3-249ENST00000636685 HACD2Q6Y1H2 254 aa11.04□□□□□ -0.64
CLN3-249ENST00000636685 OR51T1Q8NGJ9 327 aa11.04□□□□□ -0.64
CLN3-249ENST00000636685 ASB17Q8WXJ9 295 aa11.04□□□□□ -0.64
CLN3-249ENST00000636685 RFT1Q96AA3 541 aa11.04□□□□□ -0.64
CLN3-249ENST00000636685 NIPSNAP1Q9BPW8 284 aa11.04□□□□□ -0.64
CLN3-249ENST00000636685 THTPAQ9BU02 230 aa11.04□□□□□ -0.64
CLN3-249ENST00000636685 EFCAB1Q9HAE3 211 aa11.04□□□□□ -0.64
CLN3-249ENST00000636685 MRM2Q9UI43 246 aaKnown RBP11.04□□□□□ -0.64
CLN3-249ENST00000636685 MYRFQ9Y2G1 1151 aa11.04□□□□□ -0.64
CLN3-249ENST00000636685 SNX5Q9Y5X3 404 aa11.04□□□□□ -0.64
CLN3-249ENST00000636685 SYT7O43581 403 aa11.03□□□□□ -0.64
CLN3-249ENST00000636685 FKBP6O75344 327 aa11.03□□□□□ -0.64
CLN3-249ENST00000636685 CNIH1O95406 144 aa11.03□□□□□ -0.64
CLN3-249ENST00000636685 GTF2A1P52655 376 aaPredicted RBP11.03□□□□□ -0.64
CLN3-249ENST00000636685 MMDQ15546 238 aa11.03□□□□□ -0.64
CLN3-249ENST00000636685 IL34Q6ZMJ4 242 aa11.03□□□□□ -0.64
CLN3-249ENST00000636685 CHST4Q8NCG5 386 aa11.03□□□□□ -0.64
CLN3-249ENST00000636685 TMEM106AQ96A25 262 aa11.03□□□□□ -0.64
CLN3-249ENST00000636685 LRGUKQ96M69 825 aa11.03□□□□□ -0.64
CLN3-249ENST00000636685 SPACA5Q96QH8 159 aa11.03□□□□□ -0.64
CLN3-249ENST00000636685 HERC1Q15751 4861 aa11.02□□□□□ -0.65
CLN3-249ENST00000636685 IGKV1-9A0A0C4DH69 117 aa11.02□□□□□ -0.65
CLN3-249ENST00000636685 KDM4BO94953 1096 aa11.02□□□□□ -0.65
CLN3-249ENST00000636685 SERPINA3P01011 423 aa11.02□□□□□ -0.65
CLN3-249ENST00000636685 MAGEA2P43356 314 aa11.02□□□□□ -0.65
CLN3-249ENST00000636685 CD81P60033 236 aa11.02□□□□□ -0.65
CLN3-249ENST00000636685 RAB40BQ12829 278 aa11.02□□□□□ -0.65
CLN3-249ENST00000636685 GINS1Q14691 196 aa11.02□□□□□ -0.65
CLN3-249ENST00000636685 MICAQ29983 383 aa11.02□□□□□ -0.65
CLN3-249ENST00000636685 C19orf54Q5BKX5 351 aa11.02□□□□□ -0.65
CLN3-249ENST00000636685 LGALS9CQ6DKI2 356 aa11.02□□□□□ -0.65
CLN3-249ENST00000636685 ZNF322Q6U7Q0 402 aaPredicted RBP11.02□□□□□ -0.65
CLN3-249ENST00000636685 DEFB125Q8N687 156 aa11.02□□□□□ -0.65
CLN3-249ENST00000636685 DNAAF1Q8NEP3 725 aa11.02□□□□□ -0.65
CLN3-249ENST00000636685 OR10A7Q8NGE5 316 aa11.02□□□□□ -0.65
CLN3-249ENST00000636685 NSMCE2Q96MF7 247 aa11.02□□□□□ -0.65
CLN3-249ENST00000636685 SLC25A19Q9HC21 320 aa11.02□□□□□ -0.65
CLN3-249ENST00000636685 SIGLEC8Q9NYZ4 499 aa11.02□□□□□ -0.65
CLN3-249ENST00000636685 KLK5Q9Y337 293 aaPredicted RBP11.02□□□□□ -0.65
CLN3-249ENST00000636685 FBXO7Q9Y3I1 522 aa11.02□□□□□ -0.65
CLN3-249ENST00000636685 LRRC42Q9Y546 428 aa11.02□□□□□ -0.65
CLN3-249ENST00000636685 TMEM14AQ9Y6G1 99 aa11.02□□□□□ -0.65
CLN3-249ENST00000636685 CCDC182A6NF36 153 aa11.01□□□□□ -0.65
CLN3-249ENST00000636685 RPP14O95059 124 aaKnown RBP11.01□□□□□ -0.65
CLN3-249ENST00000636685 HLA-DRB1P01911 266 aa11.01□□□□□ -0.65
CLN3-249ENST00000636685 VHLP40337 213 aa11.01□□□□□ -0.65
CLN3-249ENST00000636685 NDPQ00604 133 aa11.01□□□□□ -0.65
CLN3-249ENST00000636685 CDK5R1Q15078 307 aa11.01□□□□□ -0.65
CLN3-249ENST00000636685 LCN12Q6JVE5 192 aa11.01□□□□□ -0.65
CLN3-249ENST00000636685 LINC00311Q8N616 119 aa11.01□□□□□ -0.65
CLN3-249ENST00000636685 UBALD1Q8TB05 177 aa11.01□□□□□ -0.65
CLN3-249ENST00000636685 RGP1Q92546 391 aaPredicted RBP11.01□□□□□ -0.65
CLN3-249ENST00000636685 RITA1Q96K30 269 aa11.01□□□□□ -0.65
CLN3-249ENST00000636685 MS4A10Q96PG2 267 aa11.01□□□□□ -0.65
CLN3-249ENST00000636685 ANKRD60Q9BZ19 345 aa11.01□□□□□ -0.65
CLN3-249ENST00000636685 WFDC10AQ9H1F0 79 aa11.01□□□□□ -0.65
CLN3-249ENST00000636685 NCOR1P1Q9H4R4 102 aa11.01□□□□□ -0.65
CLN3-249ENST00000636685 SPAG4Q9NPE6 437 aa11.01□□□□□ -0.65
CLN3-249ENST00000636685 MAGEL2Q9UJ55 1249 aa11.01□□□□□ -0.65
CLN3-249ENST00000636685 FOXA2Q9Y261 457 aaPredicted RBP11.01□□□□□ -0.65
CLN3-249ENST00000636685 HSPG2P98160 4391 aa11.01□□□□□ -0.65
CLN3-249ENST00000636685 H0YJX3 145 aa11□□□□□ -0.65
CLN3-249ENST00000636685 ARPC1BO15143 372 aaKnown RBP11□□□□□ -0.65
CLN3-249ENST00000636685 SLC31A2O15432 143 aa11□□□□□ -0.65
CLN3-249ENST00000636685 TPPPO94811 219 aa11□□□□□ -0.65
CLN3-249ENST00000636685 IL3RAP26951 378 aa11□□□□□ -0.65
CLN3-249ENST00000636685 CXCR4P61073 352 aa11□□□□□ -0.65
CLN3-249ENST00000636685 ACTR3P61158 418 aa11□□□□□ -0.65
CLN3-249ENST00000636685 PAN3Q58A45 887 aaKnown RBP11□□□□□ -0.65
CLN3-249ENST00000636685 C1orf146Q5VVC0 180 aa11□□□□□ -0.65
CLN3-249ENST00000636685 RSBN1Q5VWQ0 802 aaPredicted RBP11□□□□□ -0.65
CLN3-249ENST00000636685 CD300LDQ6UXZ3 194 aa11□□□□□ -0.65
CLN3-249ENST00000636685 TMEM179BQ7Z7N9 219 aa11□□□□□ -0.65
CLN3-249ENST00000636685 Q8N402 240 aa11□□□□□ -0.65
CLN3-249ENST00000636685 OR5D18Q8NGL1 313 aa11□□□□□ -0.65
CLN3-249ENST00000636685 OR9G4Q8NGQ1 327 aa11□□□□□ -0.65
CLN3-249ENST00000636685 PLPPR1Q8TBJ4 325 aa11□□□□□ -0.65
CLN3-249ENST00000636685 RHOVQ96L33 236 aa11□□□□□ -0.65
CLN3-249ENST00000636685 NEURL2Q9BR09 285 aa11□□□□□ -0.65
CLN3-249ENST00000636685 OVOL2Q9BRP0 275 aa11□□□□□ -0.65
CLN3-249ENST00000636685 SRD5A3Q9H8P0 318 aa11□□□□□ -0.65
CLN3-249ENST00000636685 A3GALT2U3KPV4 340 aa11□□□□□ -0.65
CLN3-249ENST00000636685 IGHV3-43A0A0B4J1X8 118 aa10.99□□□□□ -0.65
CLN3-249ENST00000636685 TRAV24A0A0B4J272 114 aa10.99□□□□□ -0.65
CLN3-249ENST00000636685 A0A0J9YWU9 116 aa10.99□□□□□ -0.65
CLN3-249ENST00000636685 ARPC2O15144 300 aa10.99□□□□□ -0.65
CLN3-249ENST00000636685 HMGN1P05114 100 aa10.99□□□□□ -0.65
CLN3-249ENST00000636685 IGHV3-43DP0DP04 118 aa10.99□□□□□ -0.65
CLN3-249ENST00000636685 ATF1P18846 271 aa10.99□□□□□ -0.65
CLN3-249ENST00000636685 PRR20EP86478 221 aa10.99□□□□□ -0.65
CLN3-249ENST00000636685 PRR20CP86479 221 aa10.99□□□□□ -0.65
CLN3-249ENST00000636685 PRR20DP86480 221 aa10.99□□□□□ -0.65
CLN3-249ENST00000636685 PRR20BP86481 221 aa10.99□□□□□ -0.65
CLN3-249ENST00000636685 PRR20AP86496 221 aa10.99□□□□□ -0.65
CLN3-249ENST00000636685 LRRC36Q1X8D7 754 aa10.99□□□□□ -0.65
CLN3-249ENST00000636685 OR10G2Q8NGC3 310 aa10.99□□□□□ -0.65
CLN3-249ENST00000636685 ADAT3Q96EY9 351 aaPredicted RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms