RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 TRAV39A0A0B4J263 110 aa11.82□□□□□ -0.52
UPF1-211ENST00000600868 TRAV20A0A0B4J274 112 aa11.82□□□□□ -0.52
UPF1-211ENST00000600868 ZNF729A6NN14 1252 aaPredicted RBP11.82□□□□□ -0.52
UPF1-211ENST00000600868 CYSRT1A8MQ03 144 aa11.82□□□□□ -0.52
UPF1-211ENST00000600868 INHBBP09529 407 aa11.82□□□□□ -0.52
UPF1-211ENST00000600868 ZNF728P0DKX0 622 aa11.82□□□□□ -0.52
UPF1-211ENST00000600868 GLP1RP43220 463 aa11.82□□□□□ -0.52
UPF1-211ENST00000600868 DLX6P56179 175 aa11.82□□□□□ -0.52
UPF1-211ENST00000600868 SSBP1Q04837 148 aaKnown RBP11.82□□□□□ -0.52
UPF1-211ENST00000600868 PYDC2Q56P42 97 aa11.82□□□□□ -0.52
UPF1-211ENST00000600868 HOGA1Q86XE5 327 aa11.82□□□□□ -0.52
UPF1-211ENST00000600868 GDPD1Q8N9F7 314 aa11.82□□□□□ -0.52
UPF1-211ENST00000600868 OR52I2Q8NH67 350 aa11.82□□□□□ -0.52
UPF1-211ENST00000600868 SETD6Q8TBK2 473 aa11.82□□□□□ -0.52
UPF1-211ENST00000600868 FCAMRQ8WWV6 532 aa11.82□□□□□ -0.52
UPF1-211ENST00000600868 MSI2Q96DH6 328 aaKnown RBP11.82□□□□□ -0.52
UPF1-211ENST00000600868 COX4I2Q96KJ9 171 aa11.82□□□□□ -0.52
UPF1-211ENST00000600868 ZNF714Q96N38 554 aa11.82□□□□□ -0.52
UPF1-211ENST00000600868 SRRQ9GZT4 340 aa11.82□□□□□ -0.52
UPF1-211ENST00000600868 GAL3ST2Q9H3Q3 398 aa11.82□□□□□ -0.52
UPF1-211ENST00000600868 RAB9BQ9NP90 201 aa11.82□□□□□ -0.52
UPF1-211ENST00000600868 KCNIP1Q9NZI2 227 aa11.82□□□□□ -0.52
UPF1-211ENST00000600868 MTFP1Q9UDX5 166 aa11.82□□□□□ -0.52
UPF1-211ENST00000600868 ZNF230Q9UIE0 474 aaPredicted RBP11.82□□□□□ -0.52
UPF1-211ENST00000600868 ABCA2Q9BZC7 2435 aa11.82□□□□□ -0.52
UPF1-211ENST00000600868 MED13LQ71F56 2210 aa11.82□□□□□ -0.52
UPF1-211ENST00000600868 OTOGQ6ZRI0 2925 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 KBTBD11-OT1A0A1B0GTJ5 212 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 TRDCB7Z8K6 153 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 C15orf65H3BRN8 121 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 RBBP9O75884 186 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 RBP4P02753 201 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 NAT1P18440 290 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 KIR2DS4P43632 304 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 HLA-DRB3P79483 266 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 DGCR2P98153 550 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 KIR2DS1Q14954 304 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 HMGN3Q15651 99 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 C17orf58Q2M2W7 97 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 CYB5R2Q6BCY4 276 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 BTNL3Q6UXE8 466 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 C1orf122Q6ZSJ8 110 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 KIR3DL3Q8N743 410 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 GVQW1Q8N7I0 195 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 TMEM186Q96B77 213 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 ST6GALNAC5Q9BVH7 336 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 WDR12Q9GZL7 423 aaKnown RBP11.81□□□□□ -0.52
UPF1-211ENST00000600868 TAF9BQ9HBM6 251 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 ZNF286AQ9HBT8 521 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 LPAR2Q9HBW0 351 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 IFT46Q9NQC8 304 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 CALYQ9NYX4 217 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 RBMX2Q9Y388 322 aaKnown RBP11.81□□□□□ -0.52
UPF1-211ENST00000600868 INSIG2Q9Y5U4 225 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 CREBBPQ92793 2442 aa11.81□□□□□ -0.52
UPF1-211ENST00000600868 ARHGAP32A7KAX9 2087 aa11.8□□□□□ -0.52
UPF1-211ENST00000600868 KIAA2026Q5HYC2 2103 aa11.8□□□□□ -0.52
UPF1-211ENST00000600868 MEX3AA1L020 520 aaKnown RBP11.8□□□□□ -0.52
UPF1-211ENST00000600868 MEIS3P1A6NDR6 274 aa11.8□□□□□ -0.52
UPF1-211ENST00000600868 C17orf98A8MV24 154 aa11.8□□□□□ -0.52
UPF1-211ENST00000600868 C12orf77C9JDV5 145 aa11.8□□□□□ -0.52
UPF1-211ENST00000600868 NPIPB11E5RHQ5 1161 aa11.8□□□□□ -0.52
UPF1-211ENST00000600868 M0R1W7 72 aa11.8□□□□□ -0.52
UPF1-211ENST00000600868 SMAD7O15105 426 aaKnown RBP11.8□□□□□ -0.52
UPF1-211ENST00000600868 SPINT2O43291 252 aa11.8□□□□□ -0.52
UPF1-211ENST00000600868 CCL3L1P16619 93 aa11.8□□□□□ -0.52
UPF1-211ENST00000600868 GATA3P23771 443 aa11.8□□□□□ -0.52
UPF1-211ENST00000600868 RCVRNP35243 200 aa11.8□□□□□ -0.52
UPF1-211ENST00000600868 DVL1P1P54792 670 aaPredicted RBP11.8□□□□□ -0.52
UPF1-211ENST00000600868 ACTBP60709 375 aa11.8□□□□□ -0.52
UPF1-211ENST00000600868 ACTG1P63261 375 aa11.8□□□□□ -0.52
UPF1-211ENST00000600868 PAX8Q06710 450 aa11.8□□□□□ -0.52
UPF1-211ENST00000600868 ZNF846Q147U1 533 aa11.8□□□□□ -0.52
UPF1-211ENST00000600868 Q8N402 240 aa11.8□□□□□ -0.52
UPF1-211ENST00000600868 C11orf42Q8N5U0 333 aa11.8□□□□□ -0.52
UPF1-211ENST00000600868 BEST4Q8NFU0 473 aa11.8□□□□□ -0.52
UPF1-211ENST00000600868 ARL11Q969Q4 196 aa11.8□□□□□ -0.52
UPF1-211ENST00000600868 SDHCQ99643 169 aaPredicted RBP11.8□□□□□ -0.52
UPF1-211ENST00000600868 HIF1ANQ9NWT6 349 aa11.8□□□□□ -0.52
UPF1-211ENST00000600868 KLK11Q9UBX7 282 aa11.8□□□□□ -0.52
UPF1-211ENST00000600868 ZNF107Q9UII5 783 aaPredicted RBP11.8□□□□□ -0.52
UPF1-211ENST00000600868 KPTNQ9Y664 436 aa11.8□□□□□ -0.52
UPF1-211ENST00000600868 IGKV1D-8A0A087WSZ0 117 aa11.79□□□□□ -0.52
UPF1-211ENST00000600868 hCG_1809904A0A1W2PP81 198 aa11.79□□□□□ -0.52
UPF1-211ENST00000600868 A0A1W2PPE2 198 aa11.79□□□□□ -0.52
UPF1-211ENST00000600868 A0A1W2PR64 198 aa11.79□□□□□ -0.52
UPF1-211ENST00000600868 A0A1W2PRV1 198 aa11.79□□□□□ -0.52
UPF1-211ENST00000600868 F2RL2O00254 374 aa11.79□□□□□ -0.52
UPF1-211ENST00000600868 FABP7O15540 132 aa11.79□□□□□ -0.52
UPF1-211ENST00000600868 DIRAS3O95661 229 aa11.79□□□□□ -0.52
UPF1-211ENST00000600868 TGFAP01135 160 aa11.79□□□□□ -0.52
UPF1-211ENST00000600868 HBZP02008 142 aa11.79□□□□□ -0.52
UPF1-211ENST00000600868 CD40LGP29965 261 aa11.79□□□□□ -0.52
UPF1-211ENST00000600868 SSTR5P35346 364 aa11.79□□□□□ -0.52
UPF1-211ENST00000600868 PPP5CP53041 499 aa11.79□□□□□ -0.52
UPF1-211ENST00000600868 ARF6P62330 175 aa11.79□□□□□ -0.52
UPF1-211ENST00000600868 TMEM30BQ3MIR4 351 aa11.79□□□□□ -0.52
UPF1-211ENST00000600868 RNASE12Q5GAN4 147 aaKnown RBP11.79□□□□□ -0.52
UPF1-211ENST00000600868 HEPN1Q6WQI6 88 aa11.79□□□□□ -0.52
UPF1-211ENST00000600868 GLCCI1Q86VQ1 547 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms