RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 METRNQ9UJH8 293 aa12.2□□□□□ -0.46
VRK3-217ENST00000599538 ERRFI1Q9UJM3 462 aaPredicted RBP12.2□□□□□ -0.46
VRK3-217ENST00000599538 TRAPPC2LQ9UL33 140 aa12.2□□□□□ -0.46
VRK3-217ENST00000599538 MEMO1Q9Y316 297 aa12.2□□□□□ -0.46
VRK3-217ENST00000599538 TLN1Q9Y490 2541 aaKnown RBP12.2□□□□□ -0.46
VRK3-217ENST00000599538 GPR31O00270 319 aa12.2□□□□□ -0.46
VRK3-217ENST00000599538 SH2D1BO14796 132 aa12.2□□□□□ -0.46
VRK3-217ENST00000599538 PTBP3O95758 552 aaKnown RBP12.2□□□□□ -0.46
VRK3-217ENST00000599538 SNTB1Q13884 538 aaKnown RBP12.2□□□□□ -0.46
VRK3-217ENST00000599538 PRR30Q53SZ7 412 aaPredicted RBP12.2□□□□□ -0.46
VRK3-217ENST00000599538 DOLPP1Q86YN1 238 aa12.2□□□□□ -0.46
VRK3-217ENST00000599538 H1FOOQ8IZA3 346 aaPredicted RBP12.2□□□□□ -0.46
VRK3-217ENST00000599538 OR10J5Q8NHC4 309 aa12.2□□□□□ -0.46
VRK3-217ENST00000599538 LILRB1Q8NHL6 650 aaPredicted RBP12.2□□□□□ -0.46
VRK3-217ENST00000599538 CABLES2Q9BTV7 478 aa12.2□□□□□ -0.46
VRK3-217ENST00000599538 TMEM222Q9H0R3 208 aa12.2□□□□□ -0.46
VRK3-217ENST00000599538 PCDHB10Q9UN67 800 aa12.2□□□□□ -0.46
VRK3-217ENST00000599538 IGF2RP11717 2491 aa12.19□□□□□ -0.46
VRK3-217ENST00000599538 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.19□□□□□ -0.46
VRK3-217ENST00000599538 CTXN2P0C2S0 81 aa12.19□□□□□ -0.46
VRK3-217ENST00000599538 PET100P0DJ07 73 aa12.19□□□□□ -0.46
VRK3-217ENST00000599538 TBR1Q16650 682 aa12.19□□□□□ -0.46
VRK3-217ENST00000599538 VHLLQ6RSH7 139 aa12.19□□□□□ -0.46
VRK3-217ENST00000599538 ACP7Q6ZNF0 438 aa12.19□□□□□ -0.46
VRK3-217ENST00000599538 FAM169BQ8N8A8 192 aa12.19□□□□□ -0.46
VRK3-217ENST00000599538 BSCL2Q96G97 398 aaPredicted RBP12.19□□□□□ -0.46
VRK3-217ENST00000599538 SHARPINQ9H0F6 387 aa12.19□□□□□ -0.46
VRK3-217ENST00000599538 TLNRD1Q9H1K6 362 aa12.19□□□□□ -0.46
VRK3-217ENST00000599538 BARX1Q9HBU1 254 aaPredicted RBP12.19□□□□□ -0.46
VRK3-217ENST00000599538 OR2S2Q9NQN1 319 aa12.19□□□□□ -0.46
VRK3-217ENST00000599538 SH3BGRL2Q9UJC5 107 aa12.19□□□□□ -0.46
VRK3-217ENST00000599538 OR2W1Q9Y3N9 320 aa12.19□□□□□ -0.46
VRK3-217ENST00000599538 MEX3AA1L020 520 aaKnown RBP12.19□□□□□ -0.46
VRK3-217ENST00000599538 NKX2-6A6NCS4 301 aa12.19□□□□□ -0.46
VRK3-217ENST00000599538 K7EPK0 472 aa12.19□□□□□ -0.46
VRK3-217ENST00000599538 LGALS8O00214 317 aa12.19□□□□□ -0.46
VRK3-217ENST00000599538 TESK1Q15569 626 aa12.19□□□□□ -0.46
VRK3-217ENST00000599538 FAM71E2Q8N5Q1 922 aa12.19□□□□□ -0.46
VRK3-217ENST00000599538 OR2Z1Q8NG97 314 aa12.19□□□□□ -0.46
VRK3-217ENST00000599538 STOML3Q8TAV4 291 aa12.19□□□□□ -0.46
VRK3-217ENST00000599538 SLC25A32Q9H2D1 315 aa12.19□□□□□ -0.46
VRK3-217ENST00000599538 TREM2Q9NZC2 230 aa12.19□□□□□ -0.46
VRK3-217ENST00000599538 DNAJB11Q9UBS4 358 aa12.19□□□□□ -0.46
VRK3-217ENST00000599538 ZDHHC8Q9ULC8 765 aa12.19□□□□□ -0.46
VRK3-217ENST00000599538 UBE2J1Q9Y385 318 aaPredicted RBP12.19□□□□□ -0.46
VRK3-217ENST00000599538 A8MXE2 369 aa12.18□□□□□ -0.46
VRK3-217ENST00000599538 PGLYRP1O75594 196 aaPredicted RBP12.18□□□□□ -0.46
VRK3-217ENST00000599538 IGLV2-14P01704 120 aa12.18□□□□□ -0.46
VRK3-217ENST00000599538 ACAA1P09110 424 aaPredicted RBP12.18□□□□□ -0.46
VRK3-217ENST00000599538 MDH2P40926 338 aaKnown RBP12.18□□□□□ -0.46
VRK3-217ENST00000599538 RND3P61587 244 aa12.18□□□□□ -0.46
VRK3-217ENST00000599538 THOC7Q6I9Y2 204 aaKnown RBP12.18□□□□□ -0.46
VRK3-217ENST00000599538 BAP18Q8IXM2 172 aa12.18□□□□□ -0.46
VRK3-217ENST00000599538 TMED6Q8WW62 240 aa12.18□□□□□ -0.46
VRK3-217ENST00000599538 PHYHIPLQ96FC7 376 aa12.18□□□□□ -0.46
VRK3-217ENST00000599538 SFXN3Q9BWM7 321 aa12.18□□□□□ -0.46
VRK3-217ENST00000599538 MBNL3Q9NUK0 354 aaKnown RBP12.18□□□□□ -0.46
VRK3-217ENST00000599538 MED9Q9NWA0 146 aa12.18□□□□□ -0.46
VRK3-217ENST00000599538 A0A0G2JNJ9 132 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 ZSCAN5BA6NJL1 495 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 SCO1O75880 301 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 RPL12P30050 165 aaKnown RBP12.17□□□□□ -0.46
VRK3-217ENST00000599538 CCKARP32238 428 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 NUP62P37198 522 aaPredicted RBP12.17□□□□□ -0.46
VRK3-217ENST00000599538 AESQ08117 197 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 SHEQ5VZ18 495 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 RPL7L1Q6DKI1 246 aaKnown RBP12.17□□□□□ -0.46
VRK3-217ENST00000599538 SELENOHQ8IZQ5 122 aaKnown RBP12.17□□□□□ -0.46
VRK3-217ENST00000599538 FAM185AQ8N0U4 392 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 TPRX1Q8N7U7 411 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 BOLLQ8N9W6 283 aaKnown RBP12.17□□□□□ -0.46
VRK3-217ENST00000599538 ERGIC1Q969X5 290 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 LINC00052Q96N35 136 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 SLX1AQ9BQ83 275 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 TAF9BQ9HBM6 251 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 TAAR3PQ9P1P4 343 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 Q9UFV3 132 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 ROS1P08922 2347 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 SPTBN4Q9H254 2564 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 A0A1B0GWJ7 208 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 ATP6V1G2-DDX39BF2Z307 99 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 K7ENP7 123 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 EGR1P18146 543 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 TUBG1P23258 451 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 LMO1P25800 156 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 EIF2S3LQ2VIR3 472 aaKnown RBP12.17□□□□□ -0.46
VRK3-217ENST00000599538 OR4D5Q8NGN0 318 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 COQ2Q96H96 371 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 TMEM56Q96MV1 263 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 SMIM3Q9BZL3 60 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 TUBG2Q9NRH3 451 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 PFDN2Q9UHV9 154 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 FBXO9Q9UK97 447 aaPredicted RBP12.17□□□□□ -0.46
VRK3-217ENST00000599538 WIPI2Q9Y4P8 454 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 TMEM56-RWDD3S4R434 201 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 DIDO1Q9BTC0 2240 aaKnown RBP12.17□□□□□ -0.46
VRK3-217ENST00000599538 ZZEF1O43149 2961 aa12.17□□□□□ -0.46
VRK3-217ENST00000599538 CDS2O95674 445 aa12.16□□□□□ -0.46
VRK3-217ENST00000599538 TPT1P13693 172 aaKnown RBP12.16□□□□□ -0.46
VRK3-217ENST00000599538 NKX6-1P78426 367 aaPredicted RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms