RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 GPR176Q14439 515 aa7.78□□□□□ -1.16
VRK3-216ENST00000599342 HNF4GQ14541 408 aa7.78□□□□□ -1.16
VRK3-216ENST00000599342 SLC22A6Q4U2R8 563 aa7.78□□□□□ -1.16
VRK3-216ENST00000599342 MOB3BQ86TA1 216 aa7.78□□□□□ -1.16
VRK3-216ENST00000599342 ZNF329Q86UD4 541 aa7.78□□□□□ -1.16
VRK3-216ENST00000599342 FOXRED2Q8IWF2 684 aa7.78□□□□□ -1.16
VRK3-216ENST00000599342 STX19Q8N4C7 294 aa7.78□□□□□ -1.16
VRK3-216ENST00000599342 C5orf56Q8N8D9 126 aa7.78□□□□□ -1.16
VRK3-216ENST00000599342 SETD9Q8NE22 299 aa7.78□□□□□ -1.16
VRK3-216ENST00000599342 CYGBQ8WWM9 190 aa7.78□□□□□ -1.16
VRK3-216ENST00000599342 DPF1Q92782 380 aa7.78□□□□□ -1.16
VRK3-216ENST00000599342 ARL11Q969Q4 196 aa7.78□□□□□ -1.16
VRK3-216ENST00000599342 ZNF184Q99676 751 aaPredicted RBP7.78□□□□□ -1.16
VRK3-216ENST00000599342 GPR61Q9BZJ8 451 aa7.78□□□□□ -1.16
VRK3-216ENST00000599342 RAB9BQ9NP90 201 aa7.78□□□□□ -1.16
VRK3-216ENST00000599342 BABAM2Q9NXR7 383 aa7.78□□□□□ -1.16
VRK3-216ENST00000599342 DIMT1Q9UNQ2 313 aaKnown RBP7.78□□□□□ -1.16
VRK3-216ENST00000599342 NOTCH1P46531 2555 aa7.78□□□□□ -1.16
VRK3-216ENST00000599342 A0A1W2PPE3 182 aa7.77□□□□□ -1.17
VRK3-216ENST00000599342 NUDT19A8MXV4 375 aa7.77□□□□□ -1.17
VRK3-216ENST00000599342 AIPO00170 330 aa7.77□□□□□ -1.17
VRK3-216ENST00000599342 CCRL2O00421 344 aa7.77□□□□□ -1.17
VRK3-216ENST00000599342 OGG1O15527 345 aa7.77□□□□□ -1.17
VRK3-216ENST00000599342 MPIG6BO95866 241 aa7.77□□□□□ -1.17
VRK3-216ENST00000599342 GAPDHP04406 335 aaKnown RBP7.77□□□□□ -1.17
VRK3-216ENST00000599342 IL3RAP26951 378 aa7.77□□□□□ -1.17
VRK3-216ENST00000599342 REG1BP48304 166 aa7.77□□□□□ -1.17
VRK3-216ENST00000599342 ZNF816Q0VGE8 651 aaPredicted RBP7.77□□□□□ -1.17
VRK3-216ENST00000599342 DIAPH2-AS1Q14236 149 aa7.77□□□□□ -1.17
VRK3-216ENST00000599342 LRRC36Q1X8D7 754 aa7.77□□□□□ -1.17
VRK3-216ENST00000599342 Q499Y3 187 aa7.77□□□□□ -1.17
VRK3-216ENST00000599342 YIF1BQ5BJH7 314 aa7.77□□□□□ -1.17
VRK3-216ENST00000599342 KIAA2026Q5HYC2 2103 aa7.77□□□□□ -1.17
VRK3-216ENST00000599342 SLC35E3Q7Z769 313 aa7.77□□□□□ -1.17
VRK3-216ENST00000599342 OR52M1Q8NGK5 317 aa7.77□□□□□ -1.17
VRK3-216ENST00000599342 OR13C5Q8NGS8 318 aa7.77□□□□□ -1.17
VRK3-216ENST00000599342 CCDC107Q8WV48 283 aa7.77□□□□□ -1.17
VRK3-216ENST00000599342 GHSRQ92847 366 aa7.77□□□□□ -1.17
VRK3-216ENST00000599342 ORAI1Q96D31 301 aa7.77□□□□□ -1.17
VRK3-216ENST00000599342 TMEM80Q96HE8 168 aa7.77□□□□□ -1.17
VRK3-216ENST00000599342 SPACA1Q9HBV2 294 aa7.77□□□□□ -1.17
VRK3-216ENST00000599342 ZNF581Q9P0T4 197 aa7.77□□□□□ -1.17
VRK3-216ENST00000599342 SIRT4Q9Y6E7 314 aaPredicted RBP7.77□□□□□ -1.17
VRK3-216ENST00000599342 IGHV1-3A0A0C4DH29 117 aa7.76□□□□□ -1.17
VRK3-216ENST00000599342 TRBV5-5A0A0J9YX44 114 aa7.76□□□□□ -1.17
VRK3-216ENST00000599342 A0A1W2PP11 408 aa7.76□□□□□ -1.17
VRK3-216ENST00000599342 NCBP2LA6PVI3 153 aaKnown RBP7.76□□□□□ -1.17
VRK3-216ENST00000599342 MCRIP1C9JLW8 97 aa7.76□□□□□ -1.17
VRK3-216ENST00000599342 C15orf65H3BRN8 121 aa7.76□□□□□ -1.17
VRK3-216ENST00000599342 SPINT2O43291 252 aa7.76□□□□□ -1.17
VRK3-216ENST00000599342 ORC5O43913 435 aa7.76□□□□□ -1.17
VRK3-216ENST00000599342 IGFBP3P17936 291 aaPredicted RBP7.76□□□□□ -1.17
VRK3-216ENST00000599342 FSTP19883 344 aa7.76□□□□□ -1.17
VRK3-216ENST00000599342 SLC6A1P30531 599 aa7.76□□□□□ -1.17
VRK3-216ENST00000599342 TAS2R43P59537 309 aa7.76□□□□□ -1.17
VRK3-216ENST00000599342 RPL23AP62750 156 aaKnown RBP7.76□□□□□ -1.17
VRK3-216ENST00000599342 TTC23Q5W5X9 447 aa7.76□□□□□ -1.17
VRK3-216ENST00000599342 DMKNQ6E0U4 476 aaPredicted RBP7.76□□□□□ -1.17
VRK3-216ENST00000599342 AWAT2Q6E213 333 aa7.76□□□□□ -1.17
VRK3-216ENST00000599342 IZUMO1Q8IYV9 350 aa7.76□□□□□ -1.17
VRK3-216ENST00000599342 JAGN1Q8N5M9 183 aa7.76□□□□□ -1.17
VRK3-216ENST00000599342 COMMD1Q8N668 190 aa7.76□□□□□ -1.17
VRK3-216ENST00000599342 LINC00482Q8N8I6 264 aa7.76□□□□□ -1.17
VRK3-216ENST00000599342 ZFP41Q8N8Y5 198 aa7.76□□□□□ -1.17
VRK3-216ENST00000599342 UBALD1Q8TB05 177 aa7.76□□□□□ -1.17
VRK3-216ENST00000599342 NOL4LQ96MY1 436 aaPredicted RBP7.76□□□□□ -1.17
VRK3-216ENST00000599342 C8orf4Q9NR00 106 aa7.76□□□□□ -1.17
VRK3-216ENST00000599342 GFOD1Q9NXC2 390 aa7.76□□□□□ -1.17
VRK3-216ENST00000599342 CLEC2DQ9UHP7 191 aa7.76□□□□□ -1.17
VRK3-216ENST00000599342 TRAPPC2LQ9UL33 140 aa7.76□□□□□ -1.17
VRK3-216ENST00000599342 MRPS28Q9Y2Q9 187 aaKnown RBP7.76□□□□□ -1.17
VRK3-216ENST00000599342 TGP01266 2768 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 IGHV3-43A0A0B4J1X8 118 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 IGHV3-72A0A0B4J1Y9 119 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 PNMA8CA0A1B0GUJ8 204 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 MAGEA13PA6NCF6 341 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 TXNL1O43396 289 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 LALBAP00709 142 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 IGHG2P01859 326 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 IGHV3-43DP0DP04 118 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 TMEM30BQ3MIR4 351 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 Q3ZCU0 254 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 C6orf183Q5T699 404 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 SYT6Q5T7P8 510 aaPredicted RBP7.75□□□□□ -1.17
VRK3-216ENST00000599342 GLIPR1L1Q6UWM5 242 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 ZNF497Q6ZNH5 498 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 OR2W3Q7Z3T1 314 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 TGIF2LXQ8IUE1 241 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 MRPL41Q8IXM3 137 aaKnown RBP7.75□□□□□ -1.17
VRK3-216ENST00000599342 STPG2Q8N412 459 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 PRR18Q8N4B5 295 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 DHRSXQ8N5I4 330 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 LINC00311Q8N616 119 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 C8orf31Q8N9H6 132 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 KLHL30-AS1Q8NEE0 82 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 OR2T10Q8NGZ9 312 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 RTN4IP1Q8WWV3 396 aaPredicted RBP7.75□□□□□ -1.17
VRK3-216ENST00000599342 MUL1Q969V5 352 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 MRPS24Q96EL2 167 aaKnown RBP7.75□□□□□ -1.17
VRK3-216ENST00000599342 PGLYRP3Q96LB9 341 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms