RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 POLR3AO14802 1390 aaPredicted RBP1.68□□□□□ -2.14
SMCHD1-204ENST00000581226 RAB3GAP2Q9H2M9 1393 aa1.68□□□□□ -2.14
SMCHD1-204ENST00000581226 J3QLI3 93 aa1.67□□□□□ -2.14
SMCHD1-204ENST00000581226 SCN2BO60939 215 aa1.67□□□□□ -2.14
SMCHD1-204ENST00000581226 PDYNP01213 254 aa1.67□□□□□ -2.14
SMCHD1-204ENST00000581226 IGKV1-16P04430 117 aa1.67□□□□□ -2.14
SMCHD1-204ENST00000581226 SYT1P21579 422 aa1.67□□□□□ -2.14
SMCHD1-204ENST00000581226 EVI2BP34910 448 aa1.67□□□□□ -2.14
SMCHD1-204ENST00000581226 RPA3P35244 121 aaPredicted RBP1.67□□□□□ -2.14
SMCHD1-204ENST00000581226 ZNF322Q6U7Q0 402 aaPredicted RBP1.67□□□□□ -2.14
SMCHD1-204ENST00000581226 DGAT2L6Q6ZPD8 337 aa1.67□□□□□ -2.14
SMCHD1-204ENST00000581226 C17orf78Q8N4C9 275 aa1.67□□□□□ -2.14
SMCHD1-204ENST00000581226 OR8K1Q8NGG5 319 aa1.67□□□□□ -2.14
SMCHD1-204ENST00000581226 OR10D4PQ8NGN7 298 aa1.67□□□□□ -2.14
SMCHD1-204ENST00000581226 RNASEH2CQ8TDP1 164 aaKnown RBP1.67□□□□□ -2.14
SMCHD1-204ENST00000581226 TWIST2Q8WVJ9 160 aa1.67□□□□□ -2.14
SMCHD1-204ENST00000581226 GTF2H4Q92759 462 aa1.67□□□□□ -2.14
SMCHD1-204ENST00000581226 MRAP2Q96G30 205 aa1.67□□□□□ -2.14
SMCHD1-204ENST00000581226 REEP6Q96HR9 211 aa1.67□□□□□ -2.14
SMCHD1-204ENST00000581226 CFAP53Q96M91 514 aa1.67□□□□□ -2.14
SMCHD1-204ENST00000581226 TAPBPLQ9BX59 468 aa1.67□□□□□ -2.14
SMCHD1-204ENST00000581226 BBS2Q9BXC9 721 aa1.67□□□□□ -2.14
SMCHD1-204ENST00000581226 EBPLQ9BY08 206 aa1.67□□□□□ -2.14
SMCHD1-204ENST00000581226 OR51E2Q9H255 320 aa1.67□□□□□ -2.14
SMCHD1-204ENST00000581226 TMEM106BQ9NUM4 274 aa1.67□□□□□ -2.14
SMCHD1-204ENST00000581226 OR5V1Q9UGF6 321 aa1.67□□□□□ -2.14
SMCHD1-204ENST00000581226 OR51B4Q9Y5P0 310 aa1.67□□□□□ -2.14
SMCHD1-204ENST00000581226 IGKV1-12A0A0C4DH73 117 aa1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 SMLR1H3BR10 107 aa1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 TNFAIP8O95379 198 aa1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 SOX14O95416 240 aa1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 IGKV1D-12P01611 117 aa1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 OPN1SWP03999 348 aa1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 LIMS3P0CW19 117 aa1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 LIMS4P0CW20 117 aa1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 IFI30P13284 250 aa1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 SPNP16150 400 aa1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 ZNF22P17026 224 aaPredicted RBP1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 ELK4P28324 431 aa1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 S100A2P29034 98 aa1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 COILP38432 576 aaPredicted RBP1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 RHOAP61586 193 aa1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 TIMM23BQ5SRD1 257 aa1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 NXNL2Q5VZ03 156 aa1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 LRRC6Q86X45 466 aa1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 MUC15Q8N387 334 aa1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 ACBD4Q8NC06 268 aa1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 LMX1AQ8TE12 382 aa1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 CYTH2Q99418 400 aa1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 ALX4Q9H161 411 aaPredicted RBP1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 SPACA1Q9HBV2 294 aa1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 POMPQ9Y244 141 aa1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 URGCP-MRPS24S4R325 110 aa1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 ZNF638Q14966 1978 aaKnown RBP1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 DSCAML1Q8TD84 2053 aa1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 TRPM3Q9HCF6 1732 aaPredicted RBP1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 USP42Q9H9J4 1324 aaKnown RBP1.66□□□□□ -2.14
SMCHD1-204ENST00000581226 UBDO15205 165 aa1.65□□□□□ -2.15
SMCHD1-204ENST00000581226 FABP7O15540 132 aa1.65□□□□□ -2.15
SMCHD1-204ENST00000581226 CRXO43186 299 aaPredicted RBP1.65□□□□□ -2.15
SMCHD1-204ENST00000581226 MPZL2O60487 215 aa1.65□□□□□ -2.15
SMCHD1-204ENST00000581226 POP7O75817 140 aaKnown RBP1.65□□□□□ -2.15
SMCHD1-204ENST00000581226 RD3LP0DJH9 198 aa1.65□□□□□ -2.15
SMCHD1-204ENST00000581226 ZNF3P17036 446 aa1.65□□□□□ -2.15
SMCHD1-204ENST00000581226 SPAM1P38567 509 aa1.65□□□□□ -2.15
SMCHD1-204ENST00000581226 FLOT2Q14254 428 aa1.65□□□□□ -2.15
SMCHD1-204ENST00000581226 USF2Q15853 346 aaPredicted RBP1.65□□□□□ -2.15
SMCHD1-204ENST00000581226 GOLGA7BQ2TAP0 167 aa1.65□□□□□ -2.15
SMCHD1-204ENST00000581226 BOD1L2Q8IYS8 172 aa1.65□□□□□ -2.15
SMCHD1-204ENST00000581226 ZNF567Q8N184 647 aa1.65□□□□□ -2.15
SMCHD1-204ENST00000581226 OR4A5Q8NH83 315 aa1.65□□□□□ -2.15
SMCHD1-204ENST00000581226 FAAP24Q9BTP7 215 aa1.65□□□□□ -2.15
SMCHD1-204ENST00000581226 TUBA4BQ9H853 241 aa1.65□□□□□ -2.15
SMCHD1-204ENST00000581226 LINC00588Q9Y4M8 146 aa1.65□□□□□ -2.15
SMCHD1-204ENST00000581226 TRBV24-1A0A075B6N3 115 aa1.64□□□□□ -2.15
SMCHD1-204ENST00000581226 TRAV8-2A0A0B4J237 113 aa1.64□□□□□ -2.15
SMCHD1-204ENST00000581226 A0A1W2PRG6 482 aa1.64□□□□□ -2.15
SMCHD1-204ENST00000581226 OR5H14A6NHG9 310 aa1.64□□□□□ -2.15
SMCHD1-204ENST00000581226 SULT1C2O00338 296 aa1.64□□□□□ -2.15
SMCHD1-204ENST00000581226 GPR171O14626 319 aa1.64□□□□□ -2.15
SMCHD1-204ENST00000581226 LECT2O14960 151 aa1.64□□□□□ -2.15
SMCHD1-204ENST00000581226 FGF16O43320 207 aa1.64□□□□□ -2.15
SMCHD1-204ENST00000581226 GPR75O95800 540 aa1.64□□□□□ -2.15
SMCHD1-204ENST00000581226 UGT2B10P36537 528 aa1.64□□□□□ -2.15
SMCHD1-204ENST00000581226 DEFB103AP81534 67 aa1.64□□□□□ -2.15
SMCHD1-204ENST00000581226 PMS2P3Q13401 168 aa1.64□□□□□ -2.15
SMCHD1-204ENST00000581226 MMDQ15546 238 aa1.64□□□□□ -2.15
SMCHD1-204ENST00000581226 TMEM249Q2WGJ8 235 aa1.64□□□□□ -2.15
SMCHD1-204ENST00000581226 ZCWPW2Q504Y3 356 aa1.64□□□□□ -2.15
SMCHD1-204ENST00000581226 PYCR3Q53H96 274 aa1.64□□□□□ -2.15
SMCHD1-204ENST00000581226 CLEC6AQ6EIG7 209 aa1.64□□□□□ -2.15
SMCHD1-204ENST00000581226 NOXRED1Q6NXP6 359 aa1.64□□□□□ -2.15
SMCHD1-204ENST00000581226 SYCE1Q8N0S2 351 aa1.64□□□□□ -2.15
SMCHD1-204ENST00000581226 KRTCAP2Q8N6L1 136 aa1.64□□□□□ -2.15
SMCHD1-204ENST00000581226 OR4K13Q8NH42 304 aa1.64□□□□□ -2.15
SMCHD1-204ENST00000581226 ANGPTL6Q8NI99 470 aa1.64□□□□□ -2.15
SMCHD1-204ENST00000581226 SUN5Q8TC36 379 aa1.64□□□□□ -2.15
SMCHD1-204ENST00000581226 KCTD4Q8WVF5 259 aa1.64□□□□□ -2.15
SMCHD1-204ENST00000581226 CCDC127Q96BQ5 260 aa1.64□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms