RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 RBM39Q14498 530 aaKnown RBP11.51□□□□□ -0.57
SMARCE1-216ENST00000580419 SMN1Q16637 294 aaKnown RBP11.51□□□□□ -0.57
SMARCE1-216ENST00000580419 TMEM95Q3KNT9 176 aa11.51□□□□□ -0.57
SMARCE1-216ENST00000580419 OXLD1Q5BKU9 147 aa11.51□□□□□ -0.57
SMARCE1-216ENST00000580419 OR2G6Q5TZ20 316 aa11.51□□□□□ -0.57
SMARCE1-216ENST00000580419 TRAT1Q6PIZ9 186 aa11.51□□□□□ -0.57
SMARCE1-216ENST00000580419 ZNF497Q6ZNH5 498 aa11.51□□□□□ -0.57
SMARCE1-216ENST00000580419 SATL1Q86VE3 508 aa11.51□□□□□ -0.57
SMARCE1-216ENST00000580419 C5orf56Q8N8D9 126 aa11.51□□□□□ -0.57
SMARCE1-216ENST00000580419 MYDGFQ969H8 173 aa11.51□□□□□ -0.57
SMARCE1-216ENST00000580419 PHF21AQ96BD5 680 aa11.51□□□□□ -0.57
SMARCE1-216ENST00000580419 PGLYRP3Q96LB9 341 aa11.51□□□□□ -0.57
SMARCE1-216ENST00000580419 OR5M11Q96RB7 305 aa11.51□□□□□ -0.57
SMARCE1-216ENST00000580419 NR1H4Q96RI1 486 aaPredicted RBP11.51□□□□□ -0.57
SMARCE1-216ENST00000580419 PLCXD1Q9NUJ7 323 aa11.51□□□□□ -0.57
SMARCE1-216ENST00000580419 GHRLQ9UBU3 117 aa11.51□□□□□ -0.57
SMARCE1-216ENST00000580419 ZNF580Q9UK33 172 aa11.51□□□□□ -0.57
SMARCE1-216ENST00000580419 SIRT4Q9Y6E7 314 aaPredicted RBP11.51□□□□□ -0.57
SMARCE1-216ENST00000580419 GEMIN2O14893 280 aaKnown RBP11.5□□□□□ -0.57
SMARCE1-216ENST00000580419 PIN1P1O15428 100 aa11.5□□□□□ -0.57
SMARCE1-216ENST00000580419 SC5DO75845 299 aa11.5□□□□□ -0.57
SMARCE1-216ENST00000580419 MT-ND4P03905 459 aa11.5□□□□□ -0.57
SMARCE1-216ENST00000580419 GAPDHP04406 335 aaKnown RBP11.5□□□□□ -0.57
SMARCE1-216ENST00000580419 SNRNP70P08621 437 aaKnown RBP11.5□□□□□ -0.57
SMARCE1-216ENST00000580419 PF4V1P10720 104 aa11.5□□□□□ -0.57
SMARCE1-216ENST00000580419 CD33P20138 364 aa11.5□□□□□ -0.57
SMARCE1-216ENST00000580419 CD24P25063 80 aa11.5□□□□□ -0.57
SMARCE1-216ENST00000580419 RNLSQ5VYX0 342 aa11.5□□□□□ -0.57
SMARCE1-216ENST00000580419 LYPD6Q86Y78 171 aa11.5□□□□□ -0.57
SMARCE1-216ENST00000580419 TGIF2LXQ8IUE1 241 aa11.5□□□□□ -0.57
SMARCE1-216ENST00000580419 DHRSXQ8N5I4 330 aa11.5□□□□□ -0.57
SMARCE1-216ENST00000580419 OR10X1Q8NGY0 326 aa11.5□□□□□ -0.57
SMARCE1-216ENST00000580419 MRGPRDQ8TDS7 321 aa11.5□□□□□ -0.57
SMARCE1-216ENST00000580419 FBLIM1Q8WUP2 373 aa11.5□□□□□ -0.57
SMARCE1-216ENST00000580419 ST6GALNAC6Q969X2 333 aa11.5□□□□□ -0.57
SMARCE1-216ENST00000580419 ZNF184Q99676 751 aaPredicted RBP11.5□□□□□ -0.57
SMARCE1-216ENST00000580419 UQCC2Q9BRT2 126 aa11.5□□□□□ -0.57
SMARCE1-216ENST00000580419 GON7Q9BXV9 100 aa11.5□□□□□ -0.57
SMARCE1-216ENST00000580419 FAM192AQ9GZU8 254 aa11.5□□□□□ -0.57
SMARCE1-216ENST00000580419 COL7A1Q02388 2944 aa11.49□□□□□ -0.57
SMARCE1-216ENST00000580419 PSMB11A5LHX3 300 aa11.49□□□□□ -0.57
SMARCE1-216ENST00000580419 CDRT1O95170 752 aa11.49□□□□□ -0.57
SMARCE1-216ENST00000580419 CD1BP29016 333 aa11.49□□□□□ -0.57
SMARCE1-216ENST00000580419 SSTR5P35346 364 aa11.49□□□□□ -0.57
SMARCE1-216ENST00000580419 EGFEM1PQ0D2K5 195 aa11.49□□□□□ -0.57
SMARCE1-216ENST00000580419 DOC2BQ14184 412 aa11.49□□□□□ -0.57
SMARCE1-216ENST00000580419 LY6G6FQ5SQ64 297 aa11.49□□□□□ -0.57
SMARCE1-216ENST00000580419 LYG1Q8N1E2 194 aa11.49□□□□□ -0.57
SMARCE1-216ENST00000580419 STX19Q8N4C7 294 aa11.49□□□□□ -0.57
SMARCE1-216ENST00000580419 DRAM1Q8N682 238 aa11.49□□□□□ -0.57
SMARCE1-216ENST00000580419 Q8N6K4 173 aa11.49□□□□□ -0.57
SMARCE1-216ENST00000580419 NKAIN3Q8N8D7 197 aa11.49□□□□□ -0.57
SMARCE1-216ENST00000580419 OR51D1Q8NGF3 324 aa11.49□□□□□ -0.57
SMARCE1-216ENST00000580419 OR56B4Q8NH76 319 aa11.49□□□□□ -0.57
SMARCE1-216ENST00000580419 GFOD1Q9NXC2 390 aa11.49□□□□□ -0.57
SMARCE1-216ENST00000580419 ZMAT5Q9UDW3 170 aaKnown RBP11.49□□□□□ -0.57
SMARCE1-216ENST00000580419 ING4Q9UNL4 249 aa11.49□□□□□ -0.57
SMARCE1-216ENST00000580419 IGHV1-3A0A0C4DH29 117 aa11.48□□□□□ -0.57
SMARCE1-216ENST00000580419 FAM172BPA6NC97 362 aa11.48□□□□□ -0.57
SMARCE1-216ENST00000580419 HSPB6O14558 160 aa11.48□□□□□ -0.57
SMARCE1-216ENST00000580419 HSD17B6O14756 317 aa11.48□□□□□ -0.57
SMARCE1-216ENST00000580419 BAG2O95816 211 aa11.48□□□□□ -0.57
SMARCE1-216ENST00000580419 LALBAP00709 142 aa11.48□□□□□ -0.57
SMARCE1-216ENST00000580419 TMEM11P17152 192 aa11.48□□□□□ -0.57
SMARCE1-216ENST00000580419 IL3RAP26951 378 aa11.48□□□□□ -0.57
SMARCE1-216ENST00000580419 MAPK3P27361 379 aaPredicted RBP11.48□□□□□ -0.57
SMARCE1-216ENST00000580419 ST3GAL4Q11206 333 aa11.48□□□□□ -0.57
SMARCE1-216ENST00000580419 UTF1Q5T230 341 aa11.48□□□□□ -0.57
SMARCE1-216ENST00000580419 FOXB2Q5VYV0 432 aa11.48□□□□□ -0.57
SMARCE1-216ENST00000580419 SLC25A48Q6ZT89 311 aaKnown RBP11.48□□□□□ -0.57
SMARCE1-216ENST00000580419 RNF152Q8N8N0 203 aa11.48□□□□□ -0.57
SMARCE1-216ENST00000580419 TMEM104Q8NE00 496 aa11.48□□□□□ -0.57
SMARCE1-216ENST00000580419 OR10K1Q8NGX5 313 aa11.48□□□□□ -0.57
SMARCE1-216ENST00000580419 SGCDQ92629 289 aa11.48□□□□□ -0.57
SMARCE1-216ENST00000580419 CHCHD6Q9BRQ6 235 aa11.48□□□□□ -0.57
SMARCE1-216ENST00000580419 MCRIP2Q9BUT9 160 aaKnown RBP11.48□□□□□ -0.57
SMARCE1-216ENST00000580419 KRTAP3-3Q9BYR6 98 aa11.48□□□□□ -0.57
SMARCE1-216ENST00000580419 KRTAP3-2Q9BYR7 98 aa11.48□□□□□ -0.57
SMARCE1-216ENST00000580419 LIN7CQ9NUP9 197 aaKnown RBP11.48□□□□□ -0.57
SMARCE1-216ENST00000580419 LRRC42Q9Y546 428 aa11.48□□□□□ -0.57
SMARCE1-216ENST00000580419 MCRIP1C9JLW8 97 aa11.47□□□□□ -0.57
SMARCE1-216ENST00000580419 CASQ2O14958 399 aaPredicted RBP11.47□□□□□ -0.57
SMARCE1-216ENST00000580419 PF4P02776 101 aa11.47□□□□□ -0.57
SMARCE1-216ENST00000580419 GP2P55259 537 aaKnown RBP11.47□□□□□ -0.57
SMARCE1-216ENST00000580419 SLC35B1P78383 322 aa11.47□□□□□ -0.57
SMARCE1-216ENST00000580419 SLC22A6Q4U2R8 563 aa11.47□□□□□ -0.57
SMARCE1-216ENST00000580419 C6orf183Q5T699 404 aa11.47□□□□□ -0.57
SMARCE1-216ENST00000580419 FOXRED2Q8IWF2 684 aa11.47□□□□□ -0.57
SMARCE1-216ENST00000580419 OR2T10Q8NGZ9 312 aa11.47□□□□□ -0.57
SMARCE1-216ENST00000580419 RFESDQ8TAC1 157 aa11.47□□□□□ -0.57
SMARCE1-216ENST00000580419 RTN4IP1Q8WWV3 396 aaPredicted RBP11.47□□□□□ -0.57
SMARCE1-216ENST00000580419 GGHQ92820 318 aa11.47□□□□□ -0.57
SMARCE1-216ENST00000580419 ARL11Q969Q4 196 aa11.47□□□□□ -0.57
SMARCE1-216ENST00000580419 ABCG5Q9H222 651 aa11.47□□□□□ -0.57
SMARCE1-216ENST00000580419 MBNL3Q9NUK0 354 aaKnown RBP11.47□□□□□ -0.57
SMARCE1-216ENST00000580419 AURKAIP1Q9NWT8 199 aaPredicted RBP11.47□□□□□ -0.57
SMARCE1-216ENST00000580419 ING3Q9NXR8 418 aa11.47□□□□□ -0.57
SMARCE1-216ENST00000580419 CLEC2DQ9UHP7 191 aa11.47□□□□□ -0.57
SMARCE1-216ENST00000580419 PSORS1C1Q9UIG5 152 aa11.47□□□□□ -0.57
SMARCE1-216ENST00000580419 AP4M1O00189 453 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms