RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 MPV17LQ2QL34 196 aa10.87□□□□□ -0.67
CCDC40-216ENST00000576241 C10orf99Q6UWK7 81 aa10.87□□□□□ -0.67
CCDC40-216ENST00000576241 NEK7Q8TDX7 302 aa10.87□□□□□ -0.67
CCDC40-216ENST00000576241 RCC1LQ96I51 464 aaKnown RBP10.87□□□□□ -0.67
CCDC40-216ENST00000576241 DIMT1Q9UNQ2 313 aaKnown RBP10.87□□□□□ -0.67
CCDC40-216ENST00000576241 EXOSC1Q9Y3B2 195 aaKnown RBP10.87□□□□□ -0.67
CCDC40-216ENST00000576241 KIAA2026Q5HYC2 2103 aa10.87□□□□□ -0.67
CCDC40-216ENST00000576241 CCRL2O00421 344 aa10.86□□□□□ -0.67
CCDC40-216ENST00000576241 SDCBPO00560 298 aaPredicted RBP10.86□□□□□ -0.67
CCDC40-216ENST00000576241 HSD17B6O14756 317 aa10.86□□□□□ -0.67
CCDC40-216ENST00000576241 GEMIN2O14893 280 aaKnown RBP10.86□□□□□ -0.67
CCDC40-216ENST00000576241 OGG1O15527 345 aa10.86□□□□□ -0.67
CCDC40-216ENST00000576241 FGF16O43320 207 aa10.86□□□□□ -0.67
CCDC40-216ENST00000576241 DUS4LO95620 317 aaKnown RBP10.86□□□□□ -0.67
CCDC40-216ENST00000576241 IGKV1D-33P01593 117 aa10.86□□□□□ -0.67
CCDC40-216ENST00000576241 IGKV1-33P01594 117 aa10.86□□□□□ -0.67
CCDC40-216ENST00000576241 GTF2F2P13984 249 aa10.86□□□□□ -0.67
CCDC40-216ENST00000576241 HNF4GQ14541 408 aa10.86□□□□□ -0.67
CCDC40-216ENST00000576241 SLC22A6Q4U2R8 563 aa10.86□□□□□ -0.67
CCDC40-216ENST00000576241 ATAD3CQ5T2N8 411 aa10.86□□□□□ -0.67
CCDC40-216ENST00000576241 STX19Q8N4C7 294 aa10.86□□□□□ -0.67
CCDC40-216ENST00000576241 C5orf56Q8N8D9 126 aa10.86□□□□□ -0.67
CCDC40-216ENST00000576241 OR51D1Q8NGF3 324 aa10.86□□□□□ -0.67
CCDC40-216ENST00000576241 CHPT1Q8WUD6 406 aa10.86□□□□□ -0.67
CCDC40-216ENST00000576241 CYGBQ8WWM9 190 aa10.86□□□□□ -0.67
CCDC40-216ENST00000576241 GHSRQ92847 366 aa10.86□□□□□ -0.67
CCDC40-216ENST00000576241 ARL11Q969Q4 196 aa10.86□□□□□ -0.67
CCDC40-216ENST00000576241 ZNF184Q99676 751 aaPredicted RBP10.86□□□□□ -0.67
CCDC40-216ENST00000576241 ZNF581Q9P0T4 197 aa10.86□□□□□ -0.67
CCDC40-216ENST00000576241 A0A1W2PPE3 182 aa10.85□□□□□ -0.67
CCDC40-216ENST00000576241 SERPINE3A8MV23 424 aa10.85□□□□□ -0.67
CCDC40-216ENST00000576241 GAPDHP04406 335 aaKnown RBP10.85□□□□□ -0.67
CCDC40-216ENST00000576241 ZNF816Q0VGE8 651 aaPredicted RBP10.85□□□□□ -0.67
CCDC40-216ENST00000576241 DIAPH2-AS1Q14236 149 aa10.85□□□□□ -0.67
CCDC40-216ENST00000576241 GPR176Q14439 515 aa10.85□□□□□ -0.67
CCDC40-216ENST00000576241 YIF1BQ5BJH7 314 aa10.85□□□□□ -0.67
CCDC40-216ENST00000576241 TTC23Q5W5X9 447 aa10.85□□□□□ -0.67
CCDC40-216ENST00000576241 MOB3BQ86TA1 216 aa10.85□□□□□ -0.67
CCDC40-216ENST00000576241 ZNF329Q86UD4 541 aa10.85□□□□□ -0.67
CCDC40-216ENST00000576241 SETD9Q8NE22 299 aa10.85□□□□□ -0.67
CCDC40-216ENST00000576241 OR52M1Q8NGK5 317 aa10.85□□□□□ -0.67
CCDC40-216ENST00000576241 OR13C5Q8NGS8 318 aa10.85□□□□□ -0.67
CCDC40-216ENST00000576241 TMEM80Q96HE8 168 aa10.85□□□□□ -0.67
CCDC40-216ENST00000576241 GPR61Q9BZJ8 451 aa10.85□□□□□ -0.67
CCDC40-216ENST00000576241 SPACA1Q9HBV2 294 aa10.85□□□□□ -0.67
CCDC40-216ENST00000576241 RAB9BQ9NP90 201 aa10.85□□□□□ -0.67
CCDC40-216ENST00000576241 SIRT4Q9Y6E7 314 aaPredicted RBP10.85□□□□□ -0.67
CCDC40-216ENST00000576241 DNAH3Q8TD57 4116 aa10.85□□□□□ -0.67
CCDC40-216ENST00000576241 TRBV5-5A0A0J9YX44 114 aa10.84□□□□□ -0.67
CCDC40-216ENST00000576241 AIPO00170 330 aa10.84□□□□□ -0.67
CCDC40-216ENST00000576241 ORC5O43913 435 aa10.84□□□□□ -0.67
CCDC40-216ENST00000576241 MPIG6BO95866 241 aa10.84□□□□□ -0.67
CCDC40-216ENST00000576241 IL3RAP26951 378 aa10.84□□□□□ -0.67
CCDC40-216ENST00000576241 REG1BP48304 166 aa10.84□□□□□ -0.67
CCDC40-216ENST00000576241 SLC35B1P78383 322 aa10.84□□□□□ -0.67
CCDC40-216ENST00000576241 LRRC36Q1X8D7 754 aa10.84□□□□□ -0.67
CCDC40-216ENST00000576241 Q499Y3 187 aa10.84□□□□□ -0.67
CCDC40-216ENST00000576241 DMKNQ6E0U4 476 aaPredicted RBP10.84□□□□□ -0.67
CCDC40-216ENST00000576241 ZNF497Q6ZNH5 498 aa10.84□□□□□ -0.67
CCDC40-216ENST00000576241 SLC35E3Q7Z769 313 aa10.84□□□□□ -0.67
CCDC40-216ENST00000576241 FOXRED2Q8IWF2 684 aa10.84□□□□□ -0.67
CCDC40-216ENST00000576241 JAGN1Q8N5M9 183 aa10.84□□□□□ -0.67
CCDC40-216ENST00000576241 CCDC107Q8WV48 283 aa10.84□□□□□ -0.67
CCDC40-216ENST00000576241 DPF1Q92782 380 aa10.84□□□□□ -0.67
CCDC40-216ENST00000576241 ORAI1Q96D31 301 aa10.84□□□□□ -0.67
CCDC40-216ENST00000576241 NOL4LQ96MY1 436 aaPredicted RBP10.84□□□□□ -0.67
CCDC40-216ENST00000576241 CLEC2DQ9UHP7 191 aa10.84□□□□□ -0.67
CCDC40-216ENST00000576241 TENM2Q9NT68 2774 aa10.83□□□□□ -0.68
CCDC40-216ENST00000576241 IGHV3-72A0A0B4J1Y9 119 aa10.83□□□□□ -0.68
CCDC40-216ENST00000576241 IGHV1-3A0A0C4DH29 117 aa10.83□□□□□ -0.68
CCDC40-216ENST00000576241 NCBP2LA6PVI3 153 aaKnown RBP10.83□□□□□ -0.68
CCDC40-216ENST00000576241 NUDT19A8MXV4 375 aa10.83□□□□□ -0.68
CCDC40-216ENST00000576241 MCRIP1C9JLW8 97 aa10.83□□□□□ -0.68
CCDC40-216ENST00000576241 C15orf65H3BRN8 121 aa10.83□□□□□ -0.68
CCDC40-216ENST00000576241 GPX5O75715 221 aa10.83□□□□□ -0.68
CCDC40-216ENST00000576241 LALBAP00709 142 aa10.83□□□□□ -0.68
CCDC40-216ENST00000576241 MT-ND4P03905 459 aa10.83□□□□□ -0.68
CCDC40-216ENST00000576241 IGFBP3P17936 291 aaPredicted RBP10.83□□□□□ -0.68
CCDC40-216ENST00000576241 FSTP19883 344 aa10.83□□□□□ -0.68
CCDC40-216ENST00000576241 TAS2R43P59537 309 aa10.83□□□□□ -0.68
CCDC40-216ENST00000576241 RPL23AP62750 156 aaKnown RBP10.83□□□□□ -0.68
CCDC40-216ENST00000576241 IZUMO1Q8IYV9 350 aa10.83□□□□□ -0.68
CCDC40-216ENST00000576241 COMMD1Q8N668 190 aa10.83□□□□□ -0.68
CCDC40-216ENST00000576241 LINC00482Q8N8I6 264 aa10.83□□□□□ -0.68
CCDC40-216ENST00000576241 ZFP41Q8N8Y5 198 aa10.83□□□□□ -0.68
CCDC40-216ENST00000576241 C8orf31Q8N9H6 132 aa10.83□□□□□ -0.68
CCDC40-216ENST00000576241 UBALD1Q8TB05 177 aa10.83□□□□□ -0.68
CCDC40-216ENST00000576241 MRPS24Q96EL2 167 aaKnown RBP10.83□□□□□ -0.68
CCDC40-216ENST00000576241 C8orf4Q9NR00 106 aa10.83□□□□□ -0.68
CCDC40-216ENST00000576241 ZFP57Q9NU63 452 aa10.83□□□□□ -0.68
CCDC40-216ENST00000576241 GFOD1Q9NXC2 390 aa10.83□□□□□ -0.68
CCDC40-216ENST00000576241 TRAPPC2LQ9UL33 140 aa10.83□□□□□ -0.68
CCDC40-216ENST00000576241 MRPS28Q9Y2Q9 187 aaKnown RBP10.83□□□□□ -0.68
CCDC40-216ENST00000576241 DNAH9Q9NYC9 4486 aa10.82□□□□□ -0.68
CCDC40-216ENST00000576241 TRAV8-7A0A075B6U6 113 aa10.82□□□□□ -0.68
CCDC40-216ENST00000576241 A0A1W2PP11 408 aa10.82□□□□□ -0.68
CCDC40-216ENST00000576241 MAGEA13PA6NCF6 341 aa10.82□□□□□ -0.68
CCDC40-216ENST00000576241 EFCAB10A6NFE3 127 aa10.82□□□□□ -0.68
CCDC40-216ENST00000576241 SPINT2O43291 252 aa10.82□□□□□ -0.68
CCDC40-216ENST00000576241 IGHG2P01859 326 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms