RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 SYT7O43581 403 aa9.85□□□□□ -0.83
CCDC40-208ENST00000572270 MRPL3P09001 348 aaKnown RBP9.85□□□□□ -0.83
CCDC40-208ENST00000572270 CD7P09564 240 aa9.85□□□□□ -0.83
CCDC40-208ENST00000572270 CCL1P22362 96 aa9.85□□□□□ -0.83
CCDC40-208ENST00000572270 SYNJ2BPP57105 145 aa9.85□□□□□ -0.83
CCDC40-208ENST00000572270 ACTR3P61158 418 aa9.85□□□□□ -0.83
CCDC40-208ENST00000572270 TMEM267Q0VDI3 215 aaPredicted RBP9.85□□□□□ -0.83
CCDC40-208ENST00000572270 KLF5Q13887 457 aaPredicted RBP9.85□□□□□ -0.83
CCDC40-208ENST00000572270 TATDN3Q17R31 274 aa9.85□□□□□ -0.83
CCDC40-208ENST00000572270 ODF4Q2M2E3 257 aa9.85□□□□□ -0.83
CCDC40-208ENST00000572270 LIN54Q6MZP7 749 aa9.85□□□□□ -0.83
CCDC40-208ENST00000572270 Q6P435 159 aa9.85□□□□□ -0.83
CCDC40-208ENST00000572270 IL34Q6ZMJ4 242 aa9.85□□□□□ -0.83
CCDC40-208ENST00000572270 TMEM217Q8N7C4 229 aa9.85□□□□□ -0.83
CCDC40-208ENST00000572270 ABHD5Q8WTS1 349 aa9.85□□□□□ -0.83
CCDC40-208ENST00000572270 UTP4Q969X6 686 aaKnown RBP9.85□□□□□ -0.83
CCDC40-208ENST00000572270 MS4A10Q96PG2 267 aa9.85□□□□□ -0.83
CCDC40-208ENST00000572270 ANKRD60Q9BZ19 345 aa9.85□□□□□ -0.83
CCDC40-208ENST00000572270 SLA2Q9H6Q3 261 aa9.85□□□□□ -0.83
CCDC40-208ENST00000572270 SAR1AQ9NR31 198 aa9.85□□□□□ -0.83
CCDC40-208ENST00000572270 SLC23A1Q9UHI7 598 aa9.85□□□□□ -0.83
CCDC40-208ENST00000572270 DNAH2Q9P225 4427 aa9.85□□□□□ -0.83
CCDC40-208ENST00000572270 PRR32B1ATL7 298 aa9.84□□□□□ -0.83
CCDC40-208ENST00000572270 NBR2O15453 112 aa9.84□□□□□ -0.83
CCDC40-208ENST00000572270 MAGEB3O15480 346 aa9.84□□□□□ -0.83
CCDC40-208ENST00000572270 SRSF10O75494 262 aaKnown RBP9.84□□□□□ -0.83
CCDC40-208ENST00000572270 CSN3P07498 182 aa9.84□□□□□ -0.83
CCDC40-208ENST00000572270 ATF4P18848 351 aaPredicted RBP9.84□□□□□ -0.83
CCDC40-208ENST00000572270 HMGA2P52926 109 aa9.84□□□□□ -0.83
CCDC40-208ENST00000572270 CRIP2P52943 208 aaPredicted RBP9.84□□□□□ -0.83
CCDC40-208ENST00000572270 ACTBP60709 375 aa9.84□□□□□ -0.83
CCDC40-208ENST00000572270 PDZK1IP1Q13113 114 aa9.84□□□□□ -0.83
CCDC40-208ENST00000572270 LRRC36Q1X8D7 754 aa9.84□□□□□ -0.83
CCDC40-208ENST00000572270 PAN3Q58A45 887 aaKnown RBP9.84□□□□□ -0.83
CCDC40-208ENST00000572270 C19orf54Q5BKX5 351 aa9.84□□□□□ -0.83
CCDC40-208ENST00000572270 HDXQ7Z353 690 aa9.84□□□□□ -0.83
CCDC40-208ENST00000572270 ADI1Q9BV57 179 aa9.84□□□□□ -0.83
CCDC40-208ENST00000572270 RHOFQ9HBH0 211 aa9.84□□□□□ -0.83
CCDC40-208ENST00000572270 RNF150Q9ULK6 438 aa9.84□□□□□ -0.83
CCDC40-208ENST00000572270 DHDHQ9UQ10 334 aa9.84□□□□□ -0.83
CCDC40-208ENST00000572270 V9GYY5 206 aaPredicted RBP9.84□□□□□ -0.83
CCDC40-208ENST00000572270 HERC1Q15751 4861 aa9.83□□□□□ -0.84
CCDC40-208ENST00000572270 C13orf42A0A1B0GVH6 325 aa9.83□□□□□ -0.84
CCDC40-208ENST00000572270 H0YJX3 145 aa9.83□□□□□ -0.84
CCDC40-208ENST00000572270 SDCBPO00560 298 aaPredicted RBP9.83□□□□□ -0.84
CCDC40-208ENST00000572270 KDM4BO94953 1096 aa9.83□□□□□ -0.84
CCDC40-208ENST00000572270 TRGV3P03979 118 aa9.83□□□□□ -0.84
CCDC40-208ENST00000572270 OCM2P0CE71 109 aa9.83□□□□□ -0.84
CCDC40-208ENST00000572270 OCMP0CE72 109 aaPredicted RBP9.83□□□□□ -0.84
CCDC40-208ENST00000572270 NDPQ00604 133 aa9.83□□□□□ -0.84
CCDC40-208ENST00000572270 LSAMPQ13449 338 aa9.83□□□□□ -0.84
CCDC40-208ENST00000572270 C5orf64Q2M2E5 130 aa9.83□□□□□ -0.84
CCDC40-208ENST00000572270 MOGAT2Q3SYC2 334 aa9.83□□□□□ -0.84
CCDC40-208ENST00000572270 ACTBL2Q562R1 376 aa9.83□□□□□ -0.84
CCDC40-208ENST00000572270 PLEKHG7Q6ZR37 379 aa9.83□□□□□ -0.84
CCDC40-208ENST00000572270 CPOQ8IVL8 374 aa9.83□□□□□ -0.84
CCDC40-208ENST00000572270 C8orf31Q8N9H6 132 aa9.83□□□□□ -0.84
CCDC40-208ENST00000572270 CCDC54Q8NEL0 328 aa9.83□□□□□ -0.84
CCDC40-208ENST00000572270 PP6455Q8WZ26 134 aa9.83□□□□□ -0.84
CCDC40-208ENST00000572270 RFT1Q96AA3 541 aa9.83□□□□□ -0.84
CCDC40-208ENST00000572270 GGTLC1Q9BX51 225 aa9.83□□□□□ -0.84
CCDC40-208ENST00000572270 NEK6Q9HC98 313 aa9.83□□□□□ -0.84
CCDC40-208ENST00000572270 CNOT2Q9NZN8 540 aaKnown RBP9.83□□□□□ -0.84
CCDC40-208ENST00000572270 MYRFQ9Y2G1 1151 aa9.83□□□□□ -0.84
CCDC40-208ENST00000572270 DNAH11Q96DT5 4516 aa9.83□□□□□ -0.84
CCDC40-208ENST00000572270 IGKV1-12A0A0C4DH73 117 aa9.82□□□□□ -0.84
CCDC40-208ENST00000572270 ANKRD34BA5PLL1 514 aa9.82□□□□□ -0.84
CCDC40-208ENST00000572270 PRSS29PA6NIE9 313 aa9.82□□□□□ -0.84
CCDC40-208ENST00000572270 EDF1O60869 148 aaKnown RBP9.82□□□□□ -0.84
CCDC40-208ENST00000572270 APOL3O95236 402 aa9.82□□□□□ -0.84
CCDC40-208ENST00000572270 IGKV1D-12P01611 117 aa9.82□□□□□ -0.84
CCDC40-208ENST00000572270 PRKACBP22694 351 aa9.82□□□□□ -0.84
CCDC40-208ENST00000572270 BMI1P35226 326 aa9.82□□□□□ -0.84
CCDC40-208ENST00000572270 ZNF660Q6AZW8 331 aaPredicted RBP9.82□□□□□ -0.84
CCDC40-208ENST00000572270 SLC25A48Q6ZT89 311 aaKnown RBP9.82□□□□□ -0.84
CCDC40-208ENST00000572270 WFDC3Q8IUB2 231 aa9.82□□□□□ -0.84
CCDC40-208ENST00000572270 BBS1Q8NFJ9 593 aa9.82□□□□□ -0.84
CCDC40-208ENST00000572270 OR52M1Q8NGK5 317 aa9.82□□□□□ -0.84
CCDC40-208ENST00000572270 C10orf35Q96D05 121 aa9.82□□□□□ -0.84
CCDC40-208ENST00000572270 RNF183Q96D59 192 aa9.82□□□□□ -0.84
CCDC40-208ENST00000572270 APOL4Q9BPW4 351 aa9.82□□□□□ -0.84
CCDC40-208ENST00000572270 DGCR6LQ9BY27 220 aa9.82□□□□□ -0.84
CCDC40-208ENST00000572270 GORASP2Q9H8Y8 452 aa9.82□□□□□ -0.84
CCDC40-208ENST00000572270 PEMTQ9UBM1 199 aa9.82□□□□□ -0.84
CCDC40-208ENST00000572270 LOC102724200A0A096LPH7 203 aaPredicted RBP9.81□□□□□ -0.84
CCDC40-208ENST00000572270 TRAV39A0A0B4J263 110 aa9.81□□□□□ -0.84
CCDC40-208ENST00000572270 XRCC3O43542 346 aa9.81□□□□□ -0.84
CCDC40-208ENST00000572270 SLC2A5P22732 501 aa9.81□□□□□ -0.84
CCDC40-208ENST00000572270 KCNJ3P48549 501 aa9.81□□□□□ -0.84
CCDC40-208ENST00000572270 ZNF137PP52743 207 aa9.81□□□□□ -0.84
CCDC40-208ENST00000572270 GUCA2BQ16661 112 aa9.81□□□□□ -0.84
CCDC40-208ENST00000572270 CD300EQ496F6 205 aaPredicted RBP9.81□□□□□ -0.84
CCDC40-208ENST00000572270 RSBN1Q5VWQ0 802 aaPredicted RBP9.81□□□□□ -0.84
CCDC40-208ENST00000572270 C8orf82Q6P1X6 216 aaPredicted RBP9.81□□□□□ -0.84
CCDC40-208ENST00000572270 ZNF322Q6U7Q0 402 aaPredicted RBP9.81□□□□□ -0.84
CCDC40-208ENST00000572270 UNQ5815/PRO19632Q6UWF5 114 aa9.81□□□□□ -0.84
CCDC40-208ENST00000572270 OR5D18Q8NGL1 313 aa9.81□□□□□ -0.84
CCDC40-208ENST00000572270 GFOD1Q9NXC2 390 aa9.81□□□□□ -0.84
CCDC40-208ENST00000572270 ABCD2Q9UBJ2 740 aa9.81□□□□□ -0.84
CCDC40-208ENST00000572270 HSPG2P98160 4391 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms