RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 TNFRSF9Q07011 255 aa13.66□□□□□ -0.22
CLK3-227ENST00000570296 PDZK1IP1Q13113 114 aa13.66□□□□□ -0.22
CLK3-227ENST00000570296 KLF5Q13887 457 aaPredicted RBP13.66□□□□□ -0.22
CLK3-227ENST00000570296 ECSCRQ19T08 205 aa13.66□□□□□ -0.22
CLK3-227ENST00000570296 FAHD1Q6P587 224 aa13.66□□□□□ -0.22
CLK3-227ENST00000570296 RDH10Q8IZV5 341 aa13.66□□□□□ -0.22
CLK3-227ENST00000570296 ELAC2Q9BQ52 826 aaKnown RBP13.66□□□□□ -0.22
CLK3-227ENST00000570296 SRD5A3Q9H8P0 318 aa13.66□□□□□ -0.22
CLK3-227ENST00000570296 RANGRFQ9HD47 186 aaPredicted RBP13.66□□□□□ -0.22
CLK3-227ENST00000570296 SLC2A8Q9NY64 477 aa13.66□□□□□ -0.22
CLK3-227ENST00000570296 PKD1P98161 4303 aa13.66□□□□□ -0.22
CLK3-227ENST00000570296 A0A0J9YWU9 116 aa13.65□□□□□ -0.22
CLK3-227ENST00000570296 IZUMO1RA6ND01 250 aa13.65□□□□□ -0.22
CLK3-227ENST00000570296 DEGS1O15121 323 aa13.65□□□□□ -0.22
CLK3-227ENST00000570296 KDM4BO94953 1096 aa13.65□□□□□ -0.22
CLK3-227ENST00000570296 SLC2A5P22732 501 aa13.65□□□□□ -0.22
CLK3-227ENST00000570296 MTCP1P56278 107 aa13.65□□□□□ -0.22
CLK3-227ENST00000570296 EWSR1Q01844 656 aaKnown RBP eCLIP13.65□□□□□ -0.22
CLK3-227ENST00000570296 PAX5Q02548 391 aa13.65□□□□□ -0.22
CLK3-227ENST00000570296 CGB2Q6NT52 195 aa13.65□□□□□ -0.22
CLK3-227ENST00000570296 CPOQ8IVL8 374 aa13.65□□□□□ -0.22
CLK3-227ENST00000570296 DEFB125Q8N687 156 aa13.65□□□□□ -0.22
CLK3-227ENST00000570296 CCDC54Q8NEL0 328 aa13.65□□□□□ -0.22
CLK3-227ENST00000570296 OR2K2Q8NGT1 345 aa13.65□□□□□ -0.22
CLK3-227ENST00000570296 MRGPRDQ8TDS7 321 aa13.65□□□□□ -0.22
CLK3-227ENST00000570296 TTTY10Q9BZA0 68 aa13.65□□□□□ -0.22
CLK3-227ENST00000570296 BARHL1Q9BZE3 327 aa13.65□□□□□ -0.22
CLK3-227ENST00000570296 IGKV1-12A0A0C4DH73 117 aa13.64□□□□□ -0.23
CLK3-227ENST00000570296 SYT7O43581 403 aa13.64□□□□□ -0.23
CLK3-227ENST00000570296 IGKV1D-12P01611 117 aa13.64□□□□□ -0.23
CLK3-227ENST00000570296 ACTR3P61158 418 aa13.64□□□□□ -0.23
CLK3-227ENST00000570296 PRR20EP86478 221 aa13.64□□□□□ -0.23
CLK3-227ENST00000570296 PRR20CP86479 221 aa13.64□□□□□ -0.23
CLK3-227ENST00000570296 PRR20DP86480 221 aa13.64□□□□□ -0.23
CLK3-227ENST00000570296 PRR20BP86481 221 aa13.64□□□□□ -0.23
CLK3-227ENST00000570296 PRR20AP86496 221 aa13.64□□□□□ -0.23
CLK3-227ENST00000570296 HACD2Q6Y1H2 254 aa13.64□□□□□ -0.23
CLK3-227ENST00000570296 BBS1Q8NFJ9 593 aa13.64□□□□□ -0.23
CLK3-227ENST00000570296 OR52M1Q8NGK5 317 aa13.64□□□□□ -0.23
CLK3-227ENST00000570296 PP6455Q8WZ26 134 aa13.64□□□□□ -0.23
CLK3-227ENST00000570296 C10orf35Q96D05 121 aa13.64□□□□□ -0.23
CLK3-227ENST00000570296 PRKACBP22694 351 aa13.63□□□□□ -0.23
CLK3-227ENST00000570296 VHLP40337 213 aa13.63□□□□□ -0.23
CLK3-227ENST00000570296 ZNF137PP52743 207 aa13.63□□□□□ -0.23
CLK3-227ENST00000570296 CD300LDQ6UXZ3 194 aa13.63□□□□□ -0.23
CLK3-227ENST00000570296 ANKRD60Q9BZ19 345 aa13.63□□□□□ -0.23
CLK3-227ENST00000570296 FBXO7Q9Y3I1 522 aa13.63□□□□□ -0.23
CLK3-227ENST00000570296 H3BN98 237 aa13.62□□□□□ -0.23
CLK3-227ENST00000570296 HSPB6O14558 160 aa13.62□□□□□ -0.23
CLK3-227ENST00000570296 SNX3O60493 162 aa13.62□□□□□ -0.23
CLK3-227ENST00000570296 CCDC22O60826 627 aa13.62□□□□□ -0.23
CLK3-227ENST00000570296 CSN3P07498 182 aa13.62□□□□□ -0.23
CLK3-227ENST00000570296 MRPL3P09001 348 aaKnown RBP13.62□□□□□ -0.23
CLK3-227ENST00000570296 FASP25445 335 aa13.62□□□□□ -0.23
CLK3-227ENST00000570296 MECP2P51608 486 aaKnown RBP13.62□□□□□ -0.23
CLK3-227ENST00000570296 TPPP2P59282 170 aa13.62□□□□□ -0.23
CLK3-227ENST00000570296 NDPQ00604 133 aa13.62□□□□□ -0.23
CLK3-227ENST00000570296 LSAMPQ13449 338 aa13.62□□□□□ -0.23
CLK3-227ENST00000570296 CDK5R1Q15078 307 aa13.62□□□□□ -0.23
CLK3-227ENST00000570296 C5orf64Q2M2E5 130 aa13.62□□□□□ -0.23
CLK3-227ENST00000570296 PAN3Q58A45 887 aaKnown RBP13.62□□□□□ -0.23
CLK3-227ENST00000570296 RSBN1Q5VWQ0 802 aaPredicted RBP13.62□□□□□ -0.23
CLK3-227ENST00000570296 LIN54Q6MZP7 749 aa13.62□□□□□ -0.23
CLK3-227ENST00000570296 ZNF322Q6U7Q0 402 aaPredicted RBP13.62□□□□□ -0.23
CLK3-227ENST00000570296 APOL4Q9BPW4 351 aa13.62□□□□□ -0.23
CLK3-227ENST00000570296 SLA2Q9H6Q3 261 aa13.62□□□□□ -0.23
CLK3-227ENST00000570296 EFCAB1Q9HAE3 211 aa13.62□□□□□ -0.23
CLK3-227ENST00000570296 OR11H12B2RN74 326 aa13.61□□□□□ -0.23
CLK3-227ENST00000570296 NBR2O15453 112 aa13.61□□□□□ -0.23
CLK3-227ENST00000570296 APOL3O95236 402 aa13.61□□□□□ -0.23
CLK3-227ENST00000570296 COX4I1P13073 169 aa13.61□□□□□ -0.23
CLK3-227ENST00000570296 SYNJ2BPP57105 145 aa13.61□□□□□ -0.23
CLK3-227ENST00000570296 ACTBP60709 375 aa13.61□□□□□ -0.23
CLK3-227ENST00000570296 TMEM267Q0VDI3 215 aaPredicted RBP13.61□□□□□ -0.23
CLK3-227ENST00000570296 LRRC36Q1X8D7 754 aa13.61□□□□□ -0.23
CLK3-227ENST00000570296 ODF4Q2M2E3 257 aa13.61□□□□□ -0.23
CLK3-227ENST00000570296 MOGAT2Q3SYC2 334 aa13.61□□□□□ -0.23
CLK3-227ENST00000570296 Q3ZCU0 254 aa13.61□□□□□ -0.23
CLK3-227ENST00000570296 CD200R1LQ6Q8B3 271 aa13.61□□□□□ -0.23
CLK3-227ENST00000570296 PLEKHG7Q6ZR37 379 aa13.61□□□□□ -0.23
CLK3-227ENST00000570296 SLC25A48Q6ZT89 311 aaKnown RBP13.61□□□□□ -0.23
CLK3-227ENST00000570296 LYG2Q86SG7 212 aa13.61□□□□□ -0.23
CLK3-227ENST00000570296 WFDC3Q8IUB2 231 aa13.61□□□□□ -0.23
CLK3-227ENST00000570296 ZNF251Q9BRH9 671 aa13.61□□□□□ -0.23
CLK3-227ENST00000570296 WFDC10AQ9H1F0 79 aa13.61□□□□□ -0.23
CLK3-227ENST00000570296 FAM118AQ9NWS6 357 aa13.61□□□□□ -0.23
CLK3-227ENST00000570296 SLC23A1Q9UHI7 598 aa13.61□□□□□ -0.23
CLK3-227ENST00000570296 MAGEL2Q9UJ55 1249 aa13.61□□□□□ -0.23
CLK3-227ENST00000570296 IGKV1-9A0A0C4DH69 117 aa13.6□□□□□ -0.23
CLK3-227ENST00000570296 H0YJX3 145 aa13.6□□□□□ -0.23
CLK3-227ENST00000570296 FAM107AO95990 144 aa13.6□□□□□ -0.23
CLK3-227ENST00000570296 HMGN1P05114 100 aa13.6□□□□□ -0.23
CLK3-227ENST00000570296 TFAP2AP05549 437 aa13.6□□□□□ -0.23
CLK3-227ENST00000570296 CD7P09564 240 aa13.6□□□□□ -0.23
CLK3-227ENST00000570296 CD40LGP29965 261 aa13.6□□□□□ -0.23
CLK3-227ENST00000570296 KCNJ3P48549 501 aa13.6□□□□□ -0.23
CLK3-227ENST00000570296 MICAQ29983 383 aa13.6□□□□□ -0.23
CLK3-227ENST00000570296 ZNF660Q6AZW8 331 aaPredicted RBP13.6□□□□□ -0.23
CLK3-227ENST00000570296 SAXO1Q8IYX7 474 aa13.6□□□□□ -0.23
CLK3-227ENST00000570296 PHLDA1Q8WV24 401 aaPredicted RBP13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms