RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	PPP3R1	P63098	170 aa		13.31	□□□□□ -0.28
CLN3-231	ENST00000568422	MPV17L	Q2QL34	196 aa		13.31	□□□□□ -0.28
CLN3-231	ENST00000568422	TGIF2LX	Q8IUE1	241 aa		13.31	□□□□□ -0.28
CLN3-231	ENST00000568422	OR10K1	Q8NGX5	313 aa		13.31	□□□□□ -0.28
CLN3-231	ENST00000568422	TMEM106A	Q96A25	262 aa		13.31	□□□□□ -0.28
CLN3-231	ENST00000568422	FGF20	Q9NP95	211 aa	Predicted RBP	13.31	□□□□□ -0.28
CLN3-231	ENST00000568422	IGHV1-3	A0A0C4DH29	117 aa		13.3	□□□□□ -0.28
CLN3-231	ENST00000568422	NUDT19	A8MXV4	375 aa		13.3	□□□□□ -0.28
CLN3-231	ENST00000568422	CDRT1	O95170	752 aa		13.3	□□□□□ -0.28
CLN3-231	ENST00000568422	LIMS3	P0CW19	117 aa		13.3	□□□□□ -0.28
CLN3-231	ENST00000568422	LIMS4	P0CW20	117 aa		13.3	□□□□□ -0.28
CLN3-231	ENST00000568422	HOXD3	P31249	432 aa	Predicted RBP	13.3	□□□□□ -0.28
CLN3-231	ENST00000568422	ZNF93	P35789	620 aa	Predicted RBP	13.3	□□□□□ -0.28
CLN3-231	ENST00000568422	GP2	P55259	537 aa	Known RBP	13.3	□□□□□ -0.28
CLN3-231	ENST00000568422		Q3ZCU0	254 aa		13.3	□□□□□ -0.28
CLN3-231	ENST00000568422	TEX38	Q6PEX7	206 aa		13.3	□□□□□ -0.28
CLN3-231	ENST00000568422	UNQ9370/PRO34162	Q6UXP9	181 aa		13.3	□□□□□ -0.28
CLN3-231	ENST00000568422	TMPRSS11A	Q6ZMR5	421 aa		13.3	□□□□□ -0.28
CLN3-231	ENST00000568422	IZUMO1	Q8IYV9	350 aa		13.3	□□□□□ -0.28
CLN3-231	ENST00000568422	STPG2	Q8N412	459 aa		13.3	□□□□□ -0.28
CLN3-231	ENST00000568422	LINC00311	Q8N616	119 aa		13.3	□□□□□ -0.28
CLN3-231	ENST00000568422	KLHL30-AS1	Q8NEE0	82 aa		13.3	□□□□□ -0.28
CLN3-231	ENST00000568422	RGP1	Q92546	391 aa	Predicted RBP	13.3	□□□□□ -0.28
CLN3-231	ENST00000568422	P2RX4	Q99571	388 aa		13.3	□□□□□ -0.28
CLN3-231	ENST00000568422	ING4	Q9UNL4	249 aa		13.3	□□□□□ -0.28
CLN3-231	ENST00000568422	AP4M1	O00189	453 aa		13.29	□□□□□ -0.28
CLN3-231	ENST00000568422	SDCBP	O00560	298 aa	Predicted RBP	13.29	□□□□□ -0.28
CLN3-231	ENST00000568422	ORC5	O43913	435 aa		13.29	□□□□□ -0.28
CLN3-231	ENST00000568422	IL3RA	P26951	378 aa		13.29	□□□□□ -0.28
CLN3-231	ENST00000568422	DCK	P27707	260 aa		13.29	□□□□□ -0.28
CLN3-231	ENST00000568422	BDKRB2	P30411	391 aa		13.29	□□□□□ -0.28
CLN3-231	ENST00000568422	GPR176	Q14439	515 aa		13.29	□□□□□ -0.28
CLN3-231	ENST00000568422	DDI2	Q5TDH0	399 aa		13.29	□□□□□ -0.28
CLN3-231	ENST00000568422	C8orf86	Q6ZUL3	223 aa		13.29	□□□□□ -0.28
CLN3-231	ENST00000568422	MOB3B	Q86TA1	216 aa		13.29	□□□□□ -0.28
CLN3-231	ENST00000568422	ZNF695	Q8IW36	515 aa		13.29	□□□□□ -0.28
CLN3-231	ENST00000568422	OR2T10	Q8NGZ9	312 aa		13.29	□□□□□ -0.28
CLN3-231	ENST00000568422	ARL11	Q969Q4	196 aa		13.29	□□□□□ -0.28
CLN3-231	ENST00000568422	EAF1	Q96JC9	268 aa	Predicted RBP	13.29	□□□□□ -0.28
CLN3-231	ENST00000568422	B9D2	Q9BPU9	175 aa		13.29	□□□□□ -0.28
CLN3-231	ENST00000568422	RAB9B	Q9NP90	201 aa		13.29	□□□□□ -0.28
CLN3-231	ENST00000568422	LIN7C	Q9NUP9	197 aa	Known RBP	13.29	□□□□□ -0.28
CLN3-231	ENST00000568422	TRAV39	A0A0B4J263	110 aa		13.28	□□□□□ -0.28
CLN3-231	ENST00000568422		A0A1W2PPE3	182 aa		13.28	□□□□□ -0.28
CLN3-231	ENST00000568422	IRGM	A1A4Y4	181 aa		13.28	□□□□□ -0.28
CLN3-231	ENST00000568422	NCBP2L	A6PVI3	153 aa	Known RBP	13.28	□□□□□ -0.28
CLN3-231	ENST00000568422	C15orf65	H3BRN8	121 aa		13.28	□□□□□ -0.28
CLN3-231	ENST00000568422	GEMIN2	O14893	280 aa	Known RBP	13.28	□□□□□ -0.28
CLN3-231	ENST00000568422	GTF2F2	P13984	249 aa		13.28	□□□□□ -0.28
CLN3-231	ENST00000568422	CD1B	P29016	333 aa		13.28	□□□□□ -0.28
CLN3-231	ENST00000568422	CD69	Q07108	199 aa		13.28	□□□□□ -0.28
CLN3-231	ENST00000568422	PNLIPRP3	Q17RR3	467 aa		13.28	□□□□□ -0.28
CLN3-231	ENST00000568422	STX19	Q8N4C7	294 aa		13.28	□□□□□ -0.28
CLN3-231	ENST00000568422		Q8N6K4	173 aa		13.28	□□□□□ -0.28
CLN3-231	ENST00000568422	OR8H1	Q8NGG4	311 aa		13.28	□□□□□ -0.28
CLN3-231	ENST00000568422	APH1B	Q8WW43	257 aa		13.28	□□□□□ -0.28
CLN3-231	ENST00000568422	SLC29A1	Q99808	456 aa		13.28	□□□□□ -0.28
CLN3-231	ENST00000568422	ABCG5	Q9H222	651 aa		13.28	□□□□□ -0.28
CLN3-231	ENST00000568422	SPACA1	Q9HBV2	294 aa		13.28	□□□□□ -0.28
CLN3-231	ENST00000568422	GFOD1	Q9NXC2	390 aa		13.28	□□□□□ -0.28
CLN3-231	ENST00000568422	LINC00527	Q9UJ94	153 aa		13.28	□□□□□ -0.28
CLN3-231	ENST00000568422		H0YHG0	523 aa		13.27	□□□□□ -0.29
CLN3-231	ENST00000568422	OGG1	O15527	345 aa		13.27	□□□□□ -0.29
CLN3-231	ENST00000568422	TXNL1	O43396	289 aa		13.27	□□□□□ -0.29
CLN3-231	ENST00000568422	SERPINA2	P20848	420 aa		13.27	□□□□□ -0.29
CLN3-231	ENST00000568422	GPR12	P47775	334 aa		13.27	□□□□□ -0.29
CLN3-231	ENST00000568422	RIPK1	Q13546	671 aa		13.27	□□□□□ -0.29
CLN3-231	ENST00000568422	TMEM30B	Q3MIR4	351 aa		13.27	□□□□□ -0.29
CLN3-231	ENST00000568422	ATAD3C	Q5T2N8	411 aa		13.27	□□□□□ -0.29
CLN3-231	ENST00000568422	ZNF497	Q6ZNH5	498 aa		13.27	□□□□□ -0.29
CLN3-231	ENST00000568422	ZNF555	Q8NEP9	628 aa		13.27	□□□□□ -0.29
CLN3-231	ENST00000568422	NEK7	Q8TDX7	302 aa		13.27	□□□□□ -0.29
CLN3-231	ENST00000568422	RTN4IP1	Q8WWV3	396 aa	Predicted RBP	13.27	□□□□□ -0.29
CLN3-231	ENST00000568422	ST6GALNAC6	Q969X2	333 aa		13.27	□□□□□ -0.29
CLN3-231	ENST00000568422	SMIM19	Q96E16	107 aa		13.27	□□□□□ -0.29
CLN3-231	ENST00000568422	RDH12	Q96NR8	316 aa		13.27	□□□□□ -0.29
CLN3-231	ENST00000568422	BABAM2	Q9NXR7	383 aa		13.27	□□□□□ -0.29
CLN3-231	ENST00000568422	ZNF581	Q9P0T4	197 aa		13.27	□□□□□ -0.29
CLN3-231	ENST00000568422	CKLF	Q9UBR5	152 aa		13.27	□□□□□ -0.29
CLN3-231	ENST00000568422	CCL24	O00175	119 aa		13.26	□□□□□ -0.29
CLN3-231	ENST00000568422	RRP9	O43818	475 aa	Known RBP	13.26	□□□□□ -0.29
CLN3-231	ENST00000568422	RAMP3	O60896	148 aa		13.26	□□□□□ -0.29
CLN3-231	ENST00000568422	GPX5	O75715	221 aa		13.26	□□□□□ -0.29
CLN3-231	ENST00000568422	MOS	P00540	346 aa		13.26	□□□□□ -0.29
CLN3-231	ENST00000568422	MT-ND4	P03905	459 aa		13.26	□□□□□ -0.29
CLN3-231	ENST00000568422	REG1B	P48304	166 aa		13.26	□□□□□ -0.29
CLN3-231	ENST00000568422	ETV1	P50549	477 aa		13.26	□□□□□ -0.29
CLN3-231	ENST00000568422	DGCR2	P98153	550 aa		13.26	□□□□□ -0.29
CLN3-231	ENST00000568422	XAF1	Q6GPH4	301 aa		13.26	□□□□□ -0.29
CLN3-231	ENST00000568422	C18orf65	Q6ZTR6	163 aa		13.26	□□□□□ -0.29
CLN3-231	ENST00000568422		Q8N9W7	124 aa		13.26	□□□□□ -0.29
CLN3-231	ENST00000568422	TMEM104	Q8NE00	496 aa		13.26	□□□□□ -0.29
CLN3-231	ENST00000568422	MRPS24	Q96EL2	167 aa	Known RBP	13.26	□□□□□ -0.29
CLN3-231	ENST00000568422	ZNF184	Q99676	751 aa	Predicted RBP	13.26	□□□□□ -0.29
CLN3-231	ENST00000568422	IGHV3-72	A0A0B4J1Y9	119 aa		13.25	□□□□□ -0.29
CLN3-231	ENST00000568422	MCRIP1	C9JLW8	97 aa		13.25	□□□□□ -0.29
CLN3-231	ENST00000568422	AIP	O00170	330 aa		13.25	□□□□□ -0.29
CLN3-231	ENST00000568422	WBP4	O75554	376 aa	Known RBP	13.25	□□□□□ -0.29
CLN3-231	ENST00000568422	IGFBP3	P17936	291 aa	Predicted RBP	13.25	□□□□□ -0.29
CLN3-231	ENST00000568422	MYL12A	P19105	171 aa		13.25	□□□□□ -0.29

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