RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 OR9G1Q8NH87 305 aa12.09□□□□□ -0.47
VPS39-210ENST00000568357 NEK7Q8TDX7 302 aa12.09□□□□□ -0.47
VPS39-210ENST00000568357 Q96M66 194 aa12.09□□□□□ -0.47
VPS39-210ENST00000568357 GFI1Q99684 422 aa12.09□□□□□ -0.47
VPS39-210ENST00000568357 CITED1Q99966 193 aa12.09□□□□□ -0.47
VPS39-210ENST00000568357 SPACA1Q9HBV2 294 aa12.09□□□□□ -0.47
VPS39-210ENST00000568357 RAB18Q9NP72 206 aa12.09□□□□□ -0.47
VPS39-210ENST00000568357 ACOT13Q9NPJ3 140 aa12.09□□□□□ -0.47
VPS39-210ENST00000568357 GHRLQ9UBU3 117 aa12.09□□□□□ -0.47
VPS39-210ENST00000568357 FBLN5Q9UBX5 448 aa12.09□□□□□ -0.47
VPS39-210ENST00000568357 BLOC1S6Q9UL45 172 aa12.09□□□□□ -0.47
VPS39-210ENST00000568357 PEX16Q9Y5Y5 336 aa12.09□□□□□ -0.47
VPS39-210ENST00000568357 MCRIP1C9JLW8 97 aa12.08□□□□□ -0.48
VPS39-210ENST00000568357 C15orf65H3BRN8 121 aa12.08□□□□□ -0.48
VPS39-210ENST00000568357 VSIG8P0DPA2 414 aa12.08□□□□□ -0.48
VPS39-210ENST00000568357 CD24P25063 80 aa12.08□□□□□ -0.48
VPS39-210ENST00000568357 GABRA5P31644 462 aa12.08□□□□□ -0.48
VPS39-210ENST00000568357 FABP5Q01469 135 aa12.08□□□□□ -0.48
VPS39-210ENST00000568357 EMX1Q04741 257 aaPredicted RBP12.08□□□□□ -0.48
VPS39-210ENST00000568357 TBCEQ15813 527 aaPredicted RBP12.08□□□□□ -0.48
VPS39-210ENST00000568357 LIAT1Q6ZQX7 453 aa12.08□□□□□ -0.48
VPS39-210ENST00000568357 UBALD1Q8TB05 177 aa12.08□□□□□ -0.48
VPS39-210ENST00000568357 PSG11Q9UQ72 335 aa12.08□□□□□ -0.48
VPS39-210ENST00000568357 KIAA2026Q5HYC2 2103 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 FAM90A10PA6NDY2 464 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 FAM90A18PA6NE21 464 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 FAM90A16PA6NEW6 464 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 FAM90A20PA6NIJ5 464 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 FAM90A7PA6NKC0 464 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 FAM90A12PA8MX19 464 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 FAM90A5PA8MXJ8 464 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 FAM90A23PA8MXZ1 464 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 J3QR06 171 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 F2RL2O00254 374 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 SLC22A1O15245 554 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 MPIG6BO95866 241 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 FAM90A15PP0C7V4 464 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 FAM90A13PP0C7W8 464 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 FAM90A14PP0C7W9 464 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 FAM90A24PP0C7X0 464 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 FUT3P21217 361 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 PSMA1P25786 263 aaKnown RBP12.07□□□□□ -0.48
VPS39-210ENST00000568357 HTR2CP28335 458 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 RBM39Q14498 530 aaKnown RBP12.07□□□□□ -0.48
VPS39-210ENST00000568357 TRAM1Q15629 374 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 SSX1Q16384 188 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 TPTE2P1Q5T6R2 138 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 FAM53AQ6NSI3 398 aaPredicted RBP12.07□□□□□ -0.48
VPS39-210ENST00000568357 ZNF367Q7RTV3 350 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 GAPTQ8N292 157 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 OR10A7Q8NGE5 316 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 OR4C13Q8NGP0 309 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 ARL11Q969Q4 196 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 NPFFR1Q9GZQ6 430 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 CST11Q9H112 138 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 MMP28Q9H239 520 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 KCNK15Q9H427 330 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 ETAA1Q9NY74 926 aa12.07□□□□□ -0.48
VPS39-210ENST00000568357 AK6Q9Y3D8 172 aaKnown RBP12.07□□□□□ -0.48
VPS39-210ENST00000568357 KMT2CQ8NEZ4 4911 aaKnown RBP12.06□□□□□ -0.48
VPS39-210ENST00000568357 A0A1W2PPE3 182 aa12.06□□□□□ -0.48
VPS39-210ENST00000568357 UBE2QL1A1L167 161 aa12.06□□□□□ -0.48
VPS39-210ENST00000568357 AIPO00170 330 aa12.06□□□□□ -0.48
VPS39-210ENST00000568357 ORC5O43913 435 aa12.06□□□□□ -0.48
VPS39-210ENST00000568357 UBBP0CG47 229 aa12.06□□□□□ -0.48
VPS39-210ENST00000568357 EFNB2P52799 333 aa12.06□□□□□ -0.48
VPS39-210ENST00000568357 BLCAPP62952 87 aa12.06□□□□□ -0.48
VPS39-210ENST00000568357 QRFPP83859 136 aa12.06□□□□□ -0.48
VPS39-210ENST00000568357 UNC119Q13432 240 aa12.06□□□□□ -0.48
VPS39-210ENST00000568357 FBLN7Q53RD9 439 aa12.06□□□□□ -0.48
VPS39-210ENST00000568357 SYT6Q5T7P8 510 aaPredicted RBP12.06□□□□□ -0.48
VPS39-210ENST00000568357 TREML4Q6UXN2 200 aa12.06□□□□□ -0.48
VPS39-210ENST00000568357 OR4K15Q8NH41 348 aa12.06□□□□□ -0.48
VPS39-210ENST00000568357 CREB3L1Q96BA8 519 aa12.06□□□□□ -0.48
VPS39-210ENST00000568357 RANBP3Q9H6Z4 567 aaPredicted RBP12.06□□□□□ -0.48
VPS39-210ENST00000568357 ZNF702PQ9H963 129 aa12.06□□□□□ -0.48
VPS39-210ENST00000568357 PITPNC1Q9UKF7 332 aa12.06□□□□□ -0.48
VPS39-210ENST00000568357 RYR3Q15413 4870 aa12.06□□□□□ -0.48
VPS39-210ENST00000568357 TMEM14DPA8MWL7 114 aa12.05□□□□□ -0.48
VPS39-210ENST00000568357 C12orf77C9JDV5 145 aa12.05□□□□□ -0.48
VPS39-210ENST00000568357 PDCD6O75340 191 aa12.05□□□□□ -0.48
VPS39-210ENST00000568357 ARL6IP5O75915 188 aa12.05□□□□□ -0.48
VPS39-210ENST00000568357 GLAP06280 429 aa12.05□□□□□ -0.48
VPS39-210ENST00000568357 RCC1P18754 421 aaPredicted RBP12.05□□□□□ -0.48
VPS39-210ENST00000568357 CALRP27797 417 aaKnown RBP12.05□□□□□ -0.48
VPS39-210ENST00000568357 CEACAM3P40198 252 aa12.05□□□□□ -0.48
VPS39-210ENST00000568357 GNG10P50151 68 aa12.05□□□□□ -0.48
VPS39-210ENST00000568357 LOXL3P58215 753 aa12.05□□□□□ -0.48
VPS39-210ENST00000568357 GABARAPL2P60520 117 aa12.05□□□□□ -0.48
VPS39-210ENST00000568357 RPS27AP62979 156 aaKnown RBP12.05□□□□□ -0.48
VPS39-210ENST00000568357 DIAPH2-AS1Q14236 149 aa12.05□□□□□ -0.48
VPS39-210ENST00000568357 HABP2Q14520 560 aaPredicted RBP12.05□□□□□ -0.48
VPS39-210ENST00000568357 P2RY14Q15391 338 aa12.05□□□□□ -0.48
VPS39-210ENST00000568357 Q6ZS46 218 aa12.05□□□□□ -0.48
VPS39-210ENST00000568357 SLC16A12Q6ZSM3 486 aa12.05□□□□□ -0.48
VPS39-210ENST00000568357 SPARTQ8N0X7 666 aa12.05□□□□□ -0.48
VPS39-210ENST00000568357 OR6M1Q8NGM8 313 aa12.05□□□□□ -0.48
VPS39-210ENST00000568357 KCNG3Q8TAE7 436 aa12.05□□□□□ -0.48
VPS39-210ENST00000568357 Q9H521 79 aa12.05□□□□□ -0.48
VPS39-210ENST00000568357 TRAPPC2LQ9UL33 140 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms