RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 ORAI1Q96D31 301 aa12.72□□□□□ -0.37
CLN3-229ENST00000567963 SMIM19Q96E16 107 aa12.72□□□□□ -0.37
CLN3-229ENST00000567963 PAK1IP1Q9NWT1 392 aaPredicted RBP12.72□□□□□ -0.37
CLN3-229ENST00000567963 IGHV1-3A0A0C4DH29 117 aa12.71□□□□□ -0.38
CLN3-229ENST00000567963 C15orf65H3BRN8 121 aa12.71□□□□□ -0.38
CLN3-229ENST00000567963 HSD17B6O14756 317 aa12.71□□□□□ -0.38
CLN3-229ENST00000567963 ZNF780AO75290 641 aaPredicted RBP12.71□□□□□ -0.38
CLN3-229ENST00000567963 IGHG2P01859 326 aa12.71□□□□□ -0.38
CLN3-229ENST00000567963 GAPDHP04406 335 aaKnown RBP12.71□□□□□ -0.38
CLN3-229ENST00000567963 SERPINA2P20848 420 aa12.71□□□□□ -0.38
CLN3-229ENST00000567963 RPL23AP62750 156 aaKnown RBP12.71□□□□□ -0.38
CLN3-229ENST00000567963 ETV3LQ6ZN32 361 aa12.71□□□□□ -0.38
CLN3-229ENST00000567963 MRPL41Q8IXM3 137 aaKnown RBP12.71□□□□□ -0.38
CLN3-229ENST00000567963 OR51D1Q8NGF3 324 aa12.71□□□□□ -0.38
CLN3-229ENST00000567963 OR52M1Q8NGK5 317 aa12.71□□□□□ -0.38
CLN3-229ENST00000567963 RDH12Q96NR8 316 aa12.71□□□□□ -0.38
CLN3-229ENST00000567963 SMPD3Q9NY59 655 aaPredicted RBP12.71□□□□□ -0.38
CLN3-229ENST00000567963 TMEM30CPA0ZSE6 113 aa12.7□□□□□ -0.38
CLN3-229ENST00000567963 SERPINE3A8MV23 424 aa12.7□□□□□ -0.38
CLN3-229ENST00000567963 CCRL2O00421 344 aa12.7□□□□□ -0.38
CLN3-229ENST00000567963 LALBAP00709 142 aa12.7□□□□□ -0.38
CLN3-229ENST00000567963 IGFBP3P17936 291 aaPredicted RBP12.7□□□□□ -0.38
CLN3-229ENST00000567963 THBS3P49746 956 aa12.7□□□□□ -0.38
CLN3-229ENST00000567963 EGFEM1PQ0D2K5 195 aa12.7□□□□□ -0.38
CLN3-229ENST00000567963 RIPK1Q13546 671 aa12.7□□□□□ -0.38
CLN3-229ENST00000567963 MPV17LQ2QL34 196 aa12.7□□□□□ -0.38
CLN3-229ENST00000567963 ATAD3CQ5T2N8 411 aa12.7□□□□□ -0.38
CLN3-229ENST00000567963 MOB3BQ86TA1 216 aa12.7□□□□□ -0.38
CLN3-229ENST00000567963 LINC00311Q8N616 119 aa12.7□□□□□ -0.38
CLN3-229ENST00000567963 OR13C5Q8NGS8 318 aa12.7□□□□□ -0.38
CLN3-229ENST00000567963 GHSRQ92847 366 aa12.7□□□□□ -0.38
CLN3-229ENST00000567963 ARL11Q969Q4 196 aa12.7□□□□□ -0.38
CLN3-229ENST00000567963 ZNF184Q99676 751 aaPredicted RBP12.7□□□□□ -0.38
CLN3-229ENST00000567963 ZFP57Q9NU63 452 aa12.7□□□□□ -0.38
CLN3-229ENST00000567963 LINC00527Q9UJ94 153 aa12.7□□□□□ -0.38
CLN3-229ENST00000567963 DIMT1Q9UNQ2 313 aaKnown RBP12.7□□□□□ -0.38
CLN3-229ENST00000567963 COL7A1Q02388 2944 aa12.7□□□□□ -0.38
CLN3-229ENST00000567963 TRBV5-5A0A0J9YX44 114 aa12.69□□□□□ -0.38
CLN3-229ENST00000567963 A0A1W2PP11 408 aa12.69□□□□□ -0.38
CLN3-229ENST00000567963 IRGMA1A4Y4 181 aa12.69□□□□□ -0.38
CLN3-229ENST00000567963 SDCBPO00560 298 aaPredicted RBP12.69□□□□□ -0.38
CLN3-229ENST00000567963 ORC5O43913 435 aa12.69□□□□□ -0.38
CLN3-229ENST00000567963 GPX5O75715 221 aa12.69□□□□□ -0.38
CLN3-229ENST00000567963 GTF2F2P13984 249 aa12.69□□□□□ -0.38
CLN3-229ENST00000567963 REG1BP48304 166 aa12.69□□□□□ -0.38
CLN3-229ENST00000567963 SLC22A6Q4U2R8 563 aa12.69□□□□□ -0.38
CLN3-229ENST00000567963 C18orf65Q6ZTR6 163 aa12.69□□□□□ -0.38
CLN3-229ENST00000567963 OR2W3Q7Z3T1 314 aa12.69□□□□□ -0.38
CLN3-229ENST00000567963 SLC35E3Q7Z769 313 aa12.69□□□□□ -0.38
CLN3-229ENST00000567963 C8orf31Q8N9H6 132 aa12.69□□□□□ -0.38
CLN3-229ENST00000567963 CCDC107Q8WV48 283 aa12.69□□□□□ -0.38
CLN3-229ENST00000567963 EAF1Q96JC9 268 aaPredicted RBP12.69□□□□□ -0.38
CLN3-229ENST00000567963 CLEC2DQ9UHP7 191 aa12.69□□□□□ -0.38
CLN3-229ENST00000567963 EXOSC1Q9Y3B2 195 aaKnown RBP12.69□□□□□ -0.38
CLN3-229ENST00000567963 IGHV3-72A0A0B4J1Y9 119 aa12.68□□□□□ -0.38
CLN3-229ENST00000567963 WI2-2373I1.2A0A1W2PRP0 233 aa12.68□□□□□ -0.38
CLN3-229ENST00000567963 MAGEA13PA6NCF6 341 aa12.68□□□□□ -0.38
CLN3-229ENST00000567963 LINC01548A6NM66 108 aa12.68□□□□□ -0.38
CLN3-229ENST00000567963 BAG2O95816 211 aa12.68□□□□□ -0.38
CLN3-229ENST00000567963 MT-ND4P03905 459 aa12.68□□□□□ -0.38
CLN3-229ENST00000567963 MYL12AP19105 171 aa12.68□□□□□ -0.38
CLN3-229ENST00000567963 SLC6A1P30531 599 aa12.68□□□□□ -0.38
CLN3-229ENST00000567963 HOXD3P31249 432 aaPredicted RBP12.68□□□□□ -0.38
CLN3-229ENST00000567963 RPS11P62280 158 aaKnown RBP eCLIP12.68□□□□□ -0.38
CLN3-229ENST00000567963 SLC35B1P78383 322 aa12.68□□□□□ -0.38
CLN3-229ENST00000567963 DEFB121Q5J5C9 76 aa12.68□□□□□ -0.38
CLN3-229ENST00000567963 DMKNQ6E0U4 476 aaPredicted RBP12.68□□□□□ -0.38
CLN3-229ENST00000567963 FAM53AQ6NSI3 398 aaPredicted RBP12.68□□□□□ -0.38
CLN3-229ENST00000567963 ZNF497Q6ZNH5 498 aa12.68□□□□□ -0.38
CLN3-229ENST00000567963 TGIF2LXQ8IUE1 241 aa12.68□□□□□ -0.38
CLN3-229ENST00000567963 FOXRED2Q8IWF2 684 aa12.68□□□□□ -0.38
CLN3-229ENST00000567963 STPG2Q8N412 459 aa12.68□□□□□ -0.38
CLN3-229ENST00000567963 COMMD1Q8N668 190 aa12.68□□□□□ -0.38
CLN3-229ENST00000567963 Q8N6K4 173 aa12.68□□□□□ -0.38
CLN3-229ENST00000567963 UBALD1Q8TB05 177 aa12.68□□□□□ -0.38
CLN3-229ENST00000567963 NEK7Q8TDX7 302 aa12.68□□□□□ -0.38
CLN3-229ENST00000567963 ST6GALNAC6Q969X2 333 aa12.68□□□□□ -0.38
CLN3-229ENST00000567963 GFOD1Q9NXC2 390 aa12.68□□□□□ -0.38
CLN3-229ENST00000567963 NCBP2LA6PVI3 153 aaKnown RBP12.67□□□□□ -0.38
CLN3-229ENST00000567963 AIPO00170 330 aa12.67□□□□□ -0.38
CLN3-229ENST00000567963 GPR176Q14439 515 aa12.67□□□□□ -0.38
CLN3-229ENST00000567963 Q499Y3 187 aa12.67□□□□□ -0.38
CLN3-229ENST00000567963 YIF1BQ5BJH7 314 aa12.67□□□□□ -0.38
CLN3-229ENST00000567963 C8orf86Q6ZUL3 223 aa12.67□□□□□ -0.38
CLN3-229ENST00000567963 IZUMO1Q8IYV9 350 aa12.67□□□□□ -0.38
CLN3-229ENST00000567963 ZNF485Q8NCK3 441 aa12.67□□□□□ -0.38
CLN3-229ENST00000567963 OR2T10Q8NGZ9 312 aa12.67□□□□□ -0.38
CLN3-229ENST00000567963 RTN4IP1Q8WWV3 396 aaPredicted RBP12.67□□□□□ -0.38
CLN3-229ENST00000567963 TMEM80Q96HE8 168 aa12.67□□□□□ -0.38
CLN3-229ENST00000567963 PGLYRP3Q96LB9 341 aa12.67□□□□□ -0.38
CLN3-229ENST00000567963 GPR61Q9BZJ8 451 aa12.67□□□□□ -0.38
CLN3-229ENST00000567963 ABCG5Q9H222 651 aa12.67□□□□□ -0.38
CLN3-229ENST00000567963 CKLFQ9UBR5 152 aa12.67□□□□□ -0.38
CLN3-229ENST00000567963 TRAV8-7A0A075B6U6 113 aa12.66□□□□□ -0.38
CLN3-229ENST00000567963 IGHV3-43A0A0B4J1X8 118 aa12.66□□□□□ -0.38
CLN3-229ENST00000567963 IGHV3-43DP0DP04 118 aa12.66□□□□□ -0.38
CLN3-229ENST00000567963 CD1BP29016 333 aa12.66□□□□□ -0.38
CLN3-229ENST00000567963 MYCNOSP40205 109 aa12.66□□□□□ -0.38
CLN3-229ENST00000567963 Q3ZCU0 254 aa12.66□□□□□ -0.38
CLN3-229ENST00000567963 STX19Q8N4C7 294 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms